Wall clock time and date at job start Sat Apr 11 2020 00:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 119.99837 * 2 1 4 4 C 1.52994 * 109.47350 * 269.99889 * 3 2 1 5 5 H 1.09004 * 112.84665 * 316.19846 * 4 3 2 6 6 C 1.53785 * 113.61527 * 87.50302 * 4 3 2 7 7 C 1.53775 * 87.07899 * 139.98438 * 6 4 3 8 8 H 1.09003 * 113.61654 * 89.11767 * 7 6 4 9 9 O 1.42901 * 113.69181 * 220.00869 * 7 6 4 10 10 C 1.53780 * 87.08603 * 334.56865 * 7 6 4 11 11 C 1.34773 * 119.99636 * 180.02562 * 2 1 3 12 12 O 1.21550 * 120.00139 * 174.64341 * 11 2 1 13 13 C 1.47867 * 120.00375 * 354.63918 * 11 2 1 14 14 C 1.39676 * 120.10118 * 149.67014 * 13 11 2 15 15 C 1.38036 * 120.03535 * 180.26081 * 14 13 11 16 16 C 1.38173 * 120.24812 * 359.77730 * 15 14 13 17 17 C 1.39182 * 120.20078 * 359.97438 * 16 15 14 18 18 S 1.76205 * 120.02333 * 179.97438 * 17 16 15 19 19 C 1.76198 * 100.00098 * 265.13466 * 18 17 16 20 20 H 1.08000 * 120.00013 * 5.02036 * 19 18 17 21 21 C 1.38728 * 120.00019 * 185.02196 * 19 18 17 22 22 N 1.31626 * 119.99743 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00141 * 179.97438 * 21 19 18 24 24 H 1.48513 * 109.47046 * 60.00352 * 23 21 19 25 25 H 1.48497 * 109.47375 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47539 * 300.00501 * 23 21 19 27 27 C 1.38881 * 119.95829 * 0.02562 * 17 16 15 28 28 H 1.09011 * 109.47257 * 271.88740 * 1 2 3 29 29 H 1.09000 * 109.47533 * 31.88340 * 1 2 3 30 30 H 1.08995 * 109.47287 * 151.89041 * 1 2 3 31 31 H 1.08998 * 109.47018 * 30.00650 * 3 2 1 32 32 H 1.09004 * 109.46746 * 149.99712 * 3 2 1 33 33 H 1.08998 * 113.61158 * 254.53179 * 6 4 3 34 34 H 1.08998 * 113.60966 * 25.43560 * 6 4 3 35 35 H 0.96702 * 114.00043 * 277.54234 * 9 7 6 36 36 H 1.08997 * 113.61937 * 270.88842 * 10 7 6 37 37 H 1.09005 * 113.69240 * 139.98924 * 10 7 6 38 38 H 1.07996 * 119.97858 * 359.97438 * 14 13 11 39 39 H 1.08003 * 119.87711 * 179.77057 * 15 14 13 40 40 H 1.07996 * 119.90391 * 180.02562 * 16 15 14 41 41 H 0.97005 * 119.99897 * 179.97438 * 22 21 19 42 42 H 1.07999 * 120.11737 * 179.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 1 2.7834 0.8930 -2.0831 6 6 1.3071 2.5420 -2.0437 7 6 2.3902 3.4192 -2.6934 8 1 2.7033 3.0695 -3.6772 9 8 2.0877 4.8156 -2.6713 10 6 3.3232 2.9729 -1.5553 11 6 2.1388 -1.1672 -0.0005 12 8 3.3503 -1.1696 -0.0988 13 6 1.4043 -2.4450 0.1185 14 6 1.9083 -3.6012 -0.4816 15 6 1.2188 -4.7922 -0.3741 16 6 0.0312 -4.8479 0.3301 17 6 -0.4775 -3.7030 0.9364 18 16 -1.9927 -3.7792 1.8327 19 6 -3.1179 -3.2722 0.5751 20 1 -2.7638 -3.1066 -0.4316 21 6 -4.4588 -3.0856 0.8782 22 7 -4.8904 -3.2879 2.1051 23 14 -5.6515 -2.5474 -0.4547 24 1 -5.6670 -3.5582 -1.5427 25 1 -7.0139 -2.4197 0.1222 26 1 -5.2220 -1.2362 -1.0035 27 6 0.2092 -2.5003 0.8336 28 1 -0.3634 0.0338 1.0272 29 1 -0.3634 0.8726 -0.5428 30 1 -0.3633 -0.9064 -0.4842 31 1 1.6084 2.0283 0.5139 32 1 3.1499 1.1383 0.5139 33 1 0.7001 1.9928 -2.7636 34 1 0.7100 3.0663 -1.2977 35 1 1.5012 5.1024 -3.3846 36 1 3.2773 3.6150 -0.6758 37 1 4.3443 2.7715 -1.8796 38 1 2.8355 -3.5623 -1.0338 39 1 1.6089 -5.6839 -0.8423 40 1 -0.5034 -5.7827 0.4109 41 1 -5.8279 -3.1571 2.3172 42 1 -0.1834 -1.6103 1.3028 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412447847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:20 Heat of formation + Delta-G solvation = -32.826240 kcal Electronic energy + Delta-G solvation = -24276.321471 eV Core-core repulsion = 20734.442023 eV Total energy + Delta-G solvation = -3541.879448 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.43753 -39.36651 -37.78402 -35.93640 -34.83343 -32.58304 -31.23913 -30.51851 -28.43725 -26.59203 -25.92497 -25.64152 -23.70053 -22.33547 -22.08188 -19.86155 -19.60004 -17.85936 -17.77232 -17.06098 -16.51213 -16.01051 -15.79839 -15.25438 -14.93057 -14.79758 -14.40412 -14.38181 -14.00738 -13.60586 -13.30372 -13.03233 -12.88219 -12.70510 -12.47561 -12.37612 -11.97012 -11.90506 -11.58142 -11.56727 -11.22651 -11.15530 -11.04895 -11.00414 -10.73673 -10.50112 -10.11305 -10.02138 -9.69644 -9.22189 -9.05239 -8.65793 -8.53020 -8.03128 -6.78611 -6.35654 -4.10260 1.24724 1.65474 2.91217 3.01752 3.14343 3.16369 3.20233 3.41212 3.92506 4.01009 4.20517 4.30721 4.34154 4.56355 4.62720 4.67857 5.00445 5.07614 5.14383 5.19386 5.26591 5.39101 5.41151 5.46494 5.49141 5.52199 5.55960 5.67022 5.71698 5.77389 5.84054 5.88844 5.93817 6.02585 6.12829 6.22892 6.50763 6.62334 6.69550 6.88554 7.18831 7.34953 7.38918 7.49214 8.24371 8.24561 9.09682 10.70765 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.011605 B = 0.003696 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.189894 B = 7573.634871 C = 9353.540306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.611 5.611 3 C 0.130 3.870 4 C -0.122 4.122 5 H 0.095 0.905 6 C -0.165 4.165 7 C 0.075 3.925 8 H 0.080 0.920 9 O -0.562 6.562 10 C -0.120 4.120 11 C 0.566 3.434 12 O -0.544 6.544 13 C -0.154 4.154 14 C -0.065 4.065 15 C -0.142 4.142 16 C -0.057 4.057 17 C -0.108 4.108 18 S -0.037 6.037 19 C -0.521 4.521 20 H 0.075 0.925 21 C 0.075 3.925 22 N -0.869 5.869 23 Si 0.919 3.081 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.273 1.273 27 C -0.056 4.056 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.377 0.623 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.130 0.870 41 H 0.270 0.730 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.322 9.302 -8.037 16.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.343 5.343 3 C 0.007 3.993 4 C -0.142 4.142 5 H 0.114 0.886 6 C -0.203 4.203 7 C 0.016 3.984 8 H 0.098 0.902 9 O -0.367 6.367 10 C -0.158 4.158 11 C 0.356 3.644 12 O -0.423 6.423 13 C -0.158 4.158 14 C -0.084 4.084 15 C -0.162 4.162 16 C -0.078 4.078 17 C -0.219 4.219 18 S 0.198 5.802 19 C -0.669 4.669 20 H 0.093 0.907 21 C -0.134 4.134 22 N -0.504 5.504 23 Si 0.745 3.255 24 H -0.198 1.198 25 H -0.207 1.207 26 H -0.198 1.198 27 C -0.077 4.077 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.224 0.776 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.148 0.852 41 H 0.080 0.920 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 11.905 8.998 -6.293 16.196 hybrid contribution -1.019 0.612 -2.622 2.879 sum 10.887 9.610 -8.915 17.040 Atomic orbital electron populations 1.22297 0.78593 1.03933 1.02487 1.47719 1.07375 1.05528 1.73654 1.21410 0.97737 0.84630 0.95496 1.22719 0.96994 0.96571 0.97867 0.88628 1.23779 0.97233 0.98215 1.01023 1.23351 0.96482 0.80563 0.97995 0.90243 1.86523 1.70769 1.24103 1.55309 1.23047 0.98124 0.95975 0.98665 1.18500 0.86826 0.83653 0.75442 1.90721 1.13847 1.87424 1.50296 1.19833 0.97444 0.93563 1.04987 1.21095 0.98557 0.91407 0.97357 1.21101 0.96182 0.97553 1.01322 1.21947 0.94339 0.98571 0.92965 1.22790 1.02790 0.94260 1.02055 1.83669 0.91136 1.88374 1.17070 1.22771 0.94211 1.53661 0.96207 0.90712 1.24982 0.97452 0.94739 0.96261 1.69977 1.16336 1.45870 1.18256 0.86215 0.79212 0.79289 0.80825 1.19825 1.20741 1.19846 1.22399 0.91662 0.98629 0.95043 0.91438 0.91265 0.89549 0.90178 0.89666 0.91276 0.89098 0.77626 0.89022 0.90719 0.85809 0.85836 0.85185 0.91967 0.84129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.90 8.77 59.85 0.52 1.42 16 2 N -0.61 -8.31 2.87 -182.69 -0.52 -8.84 16 3 C 0.13 1.48 5.21 -4.05 -0.02 1.46 16 4 C -0.12 -1.25 3.96 -89.81 -0.36 -1.60 16 5 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 6 C -0.16 -1.49 7.02 -25.92 -0.18 -1.68 16 7 C 0.07 0.65 5.21 -25.92 -0.14 0.51 16 8 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 9 O -0.56 -5.07 13.67 -35.23 -0.48 -5.55 16 10 C -0.12 -1.10 7.47 -25.92 -0.19 -1.30 16 11 C 0.57 9.27 7.42 -12.32 -0.09 9.18 16 12 O -0.54 -10.05 16.35 5.32 0.09 -9.96 16 13 C -0.15 -2.60 5.31 -105.00 -0.56 -3.16 16 14 C -0.06 -1.03 9.60 -39.12 -0.38 -1.41 16 15 C -0.14 -2.17 10.02 -39.68 -0.40 -2.57 16 16 C -0.06 -1.02 9.79 -39.25 -0.38 -1.41 16 17 C -0.11 -2.19 5.45 -38.99 -0.21 -2.40 16 18 S -0.04 -0.90 21.41 -107.50 -2.30 -3.20 16 19 C -0.52 -13.72 9.46 30.91 0.29 -13.43 16 20 H 0.07 1.93 7.79 -52.49 -0.41 1.52 16 21 C 0.07 1.98 5.49 -17.46 -0.10 1.89 16 22 N -0.87 -24.25 13.22 55.49 0.73 -23.51 16 23 Si 0.92 20.18 29.55 -169.99 -5.02 15.16 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 27 C -0.06 -1.02 7.34 -38.92 -0.29 -1.31 16 28 H 0.07 0.88 6.83 -51.92 -0.35 0.52 16 29 H 0.07 0.75 7.63 -51.93 -0.40 0.36 16 30 H 0.09 1.28 5.76 -51.93 -0.30 0.98 16 31 H 0.08 0.78 7.77 -51.93 -0.40 0.37 16 32 H 0.09 1.05 7.50 -51.93 -0.39 0.66 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.84 7.90 -51.93 -0.41 0.43 16 35 H 0.38 1.83 9.12 45.56 0.42 2.25 16 36 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.12 1.80 7.93 -52.49 -0.42 1.38 16 39 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 40 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 41 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.14 2.48 4.94 -52.49 -0.26 2.22 16 LS Contribution 364.19 15.07 5.49 5.49 Total: -1.00 -31.35 364.19 -9.51 -40.85 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -5.01 Total: 5.36 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -2.47 Total: -15.80 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.21 Total: -32.35 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.39 Total: -15.51 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.20 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.35 -9.51 -40.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412447847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.027 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds