Wall clock time and date at job start Sat Apr 11 2020 00:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 119.99837 * 2 1 4 4 C 1.52994 * 109.47350 * 269.99889 * 3 2 1 5 5 H 1.09004 * 112.84665 * 316.19846 * 4 3 2 6 6 C 1.53785 * 113.61527 * 87.50302 * 4 3 2 7 7 C 1.53775 * 87.07899 * 139.98438 * 6 4 3 8 8 H 1.09003 * 113.61654 * 89.11767 * 7 6 4 9 9 O 1.42901 * 113.69181 * 220.00869 * 7 6 4 10 10 C 1.53780 * 87.08603 * 334.56865 * 7 6 4 11 11 C 1.34773 * 119.99636 * 180.02562 * 2 1 3 12 12 O 1.21550 * 120.00139 * 174.64341 * 11 2 1 13 13 C 1.47867 * 120.00375 * 354.63918 * 11 2 1 14 14 C 1.39676 * 120.10118 * 149.67014 * 13 11 2 15 15 C 1.38036 * 120.03535 * 180.26081 * 14 13 11 16 16 C 1.38173 * 120.24812 * 359.77730 * 15 14 13 17 17 C 1.39182 * 120.20078 * 359.97438 * 16 15 14 18 18 S 1.76205 * 120.02333 * 179.97438 * 17 16 15 19 19 C 1.76198 * 100.00098 * 265.13466 * 18 17 16 20 20 H 1.08000 * 120.00013 * 5.02036 * 19 18 17 21 21 C 1.38728 * 120.00019 * 185.02196 * 19 18 17 22 22 N 1.31626 * 119.99743 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00141 * 179.97438 * 21 19 18 24 24 H 1.48513 * 109.47046 * 60.00352 * 23 21 19 25 25 H 1.48497 * 109.47375 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47539 * 300.00501 * 23 21 19 27 27 C 1.38881 * 119.95829 * 0.02562 * 17 16 15 28 28 H 1.09011 * 109.47257 * 271.88740 * 1 2 3 29 29 H 1.09000 * 109.47533 * 31.88340 * 1 2 3 30 30 H 1.08995 * 109.47287 * 151.89041 * 1 2 3 31 31 H 1.08998 * 109.47018 * 30.00650 * 3 2 1 32 32 H 1.09004 * 109.46746 * 149.99712 * 3 2 1 33 33 H 1.08998 * 113.61158 * 254.53179 * 6 4 3 34 34 H 1.08998 * 113.60966 * 25.43560 * 6 4 3 35 35 H 0.96702 * 114.00043 * 277.54234 * 9 7 6 36 36 H 1.08997 * 113.61937 * 270.88842 * 10 7 6 37 37 H 1.09005 * 113.69240 * 139.98924 * 10 7 6 38 38 H 1.07996 * 119.97858 * 359.97438 * 14 13 11 39 39 H 1.08003 * 119.87711 * 179.77057 * 15 14 13 40 40 H 1.07996 * 119.90391 * 180.02562 * 16 15 14 41 41 H 0.97005 * 119.99897 * 179.97438 * 22 21 19 42 42 H 1.07999 * 120.11737 * 179.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 1 2.7834 0.8930 -2.0831 6 6 1.3071 2.5420 -2.0437 7 6 2.3902 3.4192 -2.6934 8 1 2.7033 3.0695 -3.6772 9 8 2.0877 4.8156 -2.6713 10 6 3.3232 2.9729 -1.5553 11 6 2.1388 -1.1672 -0.0005 12 8 3.3503 -1.1696 -0.0988 13 6 1.4043 -2.4450 0.1185 14 6 1.9083 -3.6012 -0.4816 15 6 1.2188 -4.7922 -0.3741 16 6 0.0312 -4.8479 0.3301 17 6 -0.4775 -3.7030 0.9364 18 16 -1.9927 -3.7792 1.8327 19 6 -3.1179 -3.2722 0.5751 20 1 -2.7638 -3.1066 -0.4316 21 6 -4.4588 -3.0856 0.8782 22 7 -4.8904 -3.2879 2.1051 23 14 -5.6515 -2.5474 -0.4547 24 1 -5.6670 -3.5582 -1.5427 25 1 -7.0139 -2.4197 0.1222 26 1 -5.2220 -1.2362 -1.0035 27 6 0.2092 -2.5003 0.8336 28 1 -0.3634 0.0338 1.0272 29 1 -0.3634 0.8726 -0.5428 30 1 -0.3633 -0.9064 -0.4842 31 1 1.6084 2.0283 0.5139 32 1 3.1499 1.1383 0.5139 33 1 0.7001 1.9928 -2.7636 34 1 0.7100 3.0663 -1.2977 35 1 1.5012 5.1024 -3.3846 36 1 3.2773 3.6150 -0.6758 37 1 4.3443 2.7715 -1.8796 38 1 2.8355 -3.5623 -1.0338 39 1 1.6089 -5.6839 -0.8423 40 1 -0.5034 -5.7827 0.4109 41 1 -5.8279 -3.1571 2.3172 42 1 -0.1834 -1.6103 1.3028 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412447847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:19 Heat of formation + Delta-G solvation = -52.102845 kcal Electronic energy + Delta-G solvation = -24277.157367 eV Core-core repulsion = 20734.442023 eV Total energy + Delta-G solvation = -3542.715344 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.59696 -40.25492 -39.07715 -36.95533 -35.71064 -34.59442 -32.50049 -31.91174 -29.43929 -27.71395 -27.67299 -26.65937 -24.79517 -23.67287 -23.17334 -20.96633 -20.52461 -19.65848 -18.48972 -18.39089 -17.75904 -17.18128 -16.87194 -16.75023 -16.45021 -16.13083 -15.64757 -15.29284 -15.09582 -14.82287 -14.65761 -14.43027 -14.06250 -13.87290 -13.43031 -13.32900 -13.21077 -13.12281 -12.95748 -12.91147 -12.73915 -12.53965 -12.37058 -12.27237 -11.77374 -11.71520 -11.25187 -11.19256 -11.04996 -10.77299 -10.69701 -9.93782 -9.73724 -9.62112 -8.75729 -8.33558 -6.13429 -0.12083 0.26198 1.34260 1.42615 1.49391 1.60867 1.75686 1.91604 2.27087 2.74457 3.00215 3.30073 3.39087 3.48151 3.56807 3.62560 3.82262 3.89284 3.95931 4.07165 4.19501 4.28090 4.33085 4.36392 4.48865 4.53707 4.62108 4.67074 4.78955 4.79917 4.82663 4.85157 4.92137 5.01147 5.13255 5.22651 5.34754 5.37749 5.44321 5.48607 5.53939 5.84973 6.19260 6.21887 6.89400 6.99379 7.07461 8.72864 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.011605 B = 0.003696 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.189894 B = 7573.634871 C = 9353.540306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.602 5.602 3 C 0.127 3.873 4 C -0.120 4.120 5 H 0.080 0.920 6 C -0.159 4.159 7 C 0.080 3.920 8 H 0.092 0.908 9 O -0.577 6.577 10 C -0.120 4.120 11 C 0.563 3.437 12 O -0.569 6.569 13 C -0.157 4.157 14 C -0.061 4.061 15 C -0.126 4.126 16 C -0.066 4.066 17 C -0.127 4.127 18 S -0.088 6.088 19 C -0.531 4.531 20 H 0.071 0.929 21 C 0.025 3.975 22 N -0.907 5.907 23 Si 0.986 3.014 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.261 1.261 27 C -0.056 4.056 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.394 0.606 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.143 0.857 39 H 0.164 0.836 40 H 0.134 0.866 41 H 0.272 0.728 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.899 10.214 -10.044 18.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.333 5.333 3 C 0.005 3.995 4 C -0.140 4.140 5 H 0.098 0.902 6 C -0.197 4.197 7 C 0.021 3.979 8 H 0.110 0.890 9 O -0.386 6.386 10 C -0.158 4.158 11 C 0.353 3.647 12 O -0.450 6.450 13 C -0.162 4.162 14 C -0.080 4.080 15 C -0.145 4.145 16 C -0.086 4.086 17 C -0.238 4.238 18 S 0.147 5.853 19 C -0.678 4.678 20 H 0.090 0.910 21 C -0.181 4.181 22 N -0.543 5.543 23 Si 0.808 3.192 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.186 1.186 27 C -0.077 4.077 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.244 0.756 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.161 0.839 39 H 0.181 0.819 40 H 0.152 0.848 41 H 0.082 0.918 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 12.475 9.935 -8.310 17.983 hybrid contribution -1.074 0.333 -2.011 2.304 sum 11.401 10.268 -10.320 18.492 Atomic orbital electron populations 1.22279 0.78098 1.04144 1.02539 1.47766 1.07678 1.05654 1.72181 1.21604 0.97371 0.83912 0.96624 1.22593 0.98221 0.96557 0.96625 0.90203 1.23741 0.96983 0.97937 1.00990 1.23315 0.95793 0.80518 0.98269 0.89014 1.86477 1.71425 1.24089 1.56563 1.23048 0.98349 0.95291 0.99136 1.18453 0.86507 0.84172 0.75581 1.90707 1.14629 1.87774 1.51864 1.19973 0.96906 0.94622 1.04729 1.21438 0.98971 0.91099 0.96462 1.21418 0.94554 0.98786 0.99739 1.22046 0.95457 0.97899 0.93237 1.22533 1.01236 0.96139 1.03940 1.83631 0.94143 1.88646 1.18898 1.23008 0.95026 1.53390 0.96393 0.91031 1.25902 0.99141 0.94584 0.98441 1.70103 1.16777 1.47123 1.20316 0.85181 0.76818 0.79292 0.77906 1.19307 1.20262 1.18552 1.22284 0.92142 0.97937 0.95369 0.91631 0.88758 0.91394 0.88186 0.90706 0.91136 0.88941 0.75588 0.89017 0.90431 0.83898 0.81861 0.84845 0.91842 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.80 8.77 127.77 1.12 2.92 16 2 N -0.60 -15.86 2.87 -850.19 -2.44 -18.30 16 3 C 0.13 2.73 5.21 86.38 0.45 3.18 16 4 C -0.12 -2.29 3.96 -10.27 -0.04 -2.33 16 5 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 6 C -0.16 -2.55 7.02 31.12 0.22 -2.33 16 7 C 0.08 1.21 5.21 31.12 0.16 1.37 16 8 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 9 O -0.58 -9.11 13.67 -148.98 -2.04 -11.14 16 10 C -0.12 -2.02 7.47 31.12 0.23 -1.79 16 11 C 0.56 18.05 7.42 86.79 0.64 18.69 16 12 O -0.57 -20.58 16.35 -3.87 -0.06 -20.64 16 13 C -0.16 -5.21 5.31 -20.11 -0.11 -5.31 16 14 C -0.06 -1.80 9.60 22.57 0.22 -1.58 16 15 C -0.13 -3.52 10.02 22.21 0.22 -3.30 16 16 C -0.07 -2.29 9.79 22.48 0.22 -2.07 16 17 C -0.13 -5.21 5.45 22.65 0.12 -5.08 16 18 S -0.09 -4.42 21.41 -56.49 -1.21 -5.62 16 19 C -0.53 -28.42 9.46 67.94 0.64 -27.78 16 20 H 0.07 3.74 7.79 -2.91 -0.02 3.72 16 21 C 0.02 1.32 5.49 84.84 0.47 1.78 16 22 N -0.91 -51.51 13.22 21.64 0.29 -51.22 16 23 Si 0.99 41.15 29.55 68.60 2.03 43.18 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 26 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 27 C -0.06 -2.06 7.34 22.70 0.17 -1.90 16 28 H 0.07 1.69 6.83 -2.38 -0.02 1.67 16 29 H 0.09 1.88 7.63 -2.39 -0.02 1.86 16 30 H 0.07 2.00 5.76 -2.39 -0.01 1.98 16 31 H 0.10 1.75 7.77 -2.39 -0.02 1.73 16 32 H 0.07 1.79 7.50 -2.38 -0.02 1.77 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.09 1.47 7.90 -2.39 -0.02 1.46 16 35 H 0.39 2.90 9.12 -74.06 -0.68 2.22 16 36 H 0.09 1.54 8.10 -2.39 -0.02 1.52 16 37 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.14 3.73 7.93 -2.91 -0.02 3.71 16 39 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 40 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 41 H 0.27 14.48 8.31 -92.70 -0.77 13.71 16 42 H 0.14 5.01 4.94 -2.91 -0.01 5.00 16 Total: -1.00 -67.94 364.19 1.67 -66.27 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.37 Total: 23.01 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 4.74 Total: -25.53 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -2.16 Total: -69.52 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -2.10 Total: -31.79 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 16 Polarization: -4.42 SS G_CDS: -1.21 Total: -5.62 kcal Total: -67.94 1.67 -66.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412447847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.170 kcal (2) G-P(sol) polarization free energy of solvation -67.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds