Wall clock time and date at job start Sat Apr 11 2020 00:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47353 * 2 1 4 4 C 1.42901 * 114.00240 * 180.02562 * 3 2 1 5 5 H 1.09001 * 110.88181 * 26.12724 * 4 3 2 6 6 C 1.55153 * 111.00289 * 150.00093 * 4 3 2 7 7 C 1.54322 * 102.94191 * 153.57758 * 6 4 3 8 8 N 1.47019 * 107.27134 * 337.80723 * 7 6 4 9 9 C 1.34781 * 125.64903 * 178.89143 * 8 7 6 10 10 O 1.21549 * 119.99844 * 174.89668 * 9 8 7 11 11 C 1.47858 * 119.99992 * 354.89997 * 9 8 7 12 12 C 1.39675 * 120.09831 * 187.78440 * 11 9 8 13 13 C 1.38042 * 120.03125 * 179.78558 * 12 11 9 14 14 C 1.38176 * 120.25013 * 0.47400 * 13 12 11 15 15 C 1.39176 * 120.20002 * 359.77871 * 14 13 12 16 16 S 1.76201 * 120.02296 * 179.97438 * 15 14 13 17 17 C 1.76200 * 99.99944 * 275.01290 * 16 15 14 18 18 H 1.08000 * 120.00129 * 354.99176 * 17 16 15 19 19 C 1.38724 * 119.99990 * 174.99944 * 17 16 15 20 20 N 1.31626 * 119.99970 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00198 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.46967 * 90.00272 * 21 19 17 23 23 H 1.48495 * 109.47088 * 210.00532 * 21 19 17 24 24 H 1.48499 * 109.46724 * 330.00289 * 21 19 17 25 25 C 1.38877 * 119.96157 * 359.97438 * 15 14 13 26 26 C 1.47425 * 108.70478 * 358.94291 * 8 7 6 27 27 H 1.09001 * 109.46446 * 299.99366 * 1 2 3 28 28 H 1.08997 * 109.46881 * 59.99742 * 1 2 3 29 29 H 1.09003 * 109.46911 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47158 * 240.00412 * 2 1 3 31 31 H 1.08994 * 109.47579 * 120.00433 * 2 1 3 32 32 H 1.08998 * 110.72341 * 271.94273 * 6 4 3 33 33 H 1.09010 * 110.72248 * 35.21911 * 6 4 3 34 34 H 1.09004 * 109.88355 * 97.22622 * 7 6 4 35 35 H 1.09000 * 109.88385 * 218.39432 * 7 6 4 36 36 H 1.07992 * 119.98182 * 0.02562 * 12 11 9 37 37 H 1.08007 * 119.87346 * 180.23263 * 13 12 11 38 38 H 1.08002 * 119.90168 * 179.76787 * 14 13 12 39 39 H 0.96999 * 119.99917 * 179.97438 * 20 19 17 40 40 H 1.07998 * 120.12709 * 180.02562 * 25 15 14 41 41 H 1.08997 * 110.36357 * 265.28954 * 26 8 7 42 42 H 1.08992 * 110.37117 * 142.96300 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 -0.0006 5 1 3.8903 0.5793 -0.4494 6 6 3.8860 2.7546 -0.7248 7 6 5.2477 3.0589 -0.0657 8 7 5.2614 2.3834 1.2400 9 6 6.2857 2.3877 2.1161 10 8 6.1533 1.8714 3.2085 11 6 7.5704 3.0205 1.7482 12 6 8.6817 2.8865 2.5836 13 6 9.8817 3.4742 2.2366 14 6 9.9869 4.2048 1.0686 15 6 8.8845 4.3493 0.2315 16 16 9.0237 5.2826 -1.2566 17 6 8.7325 6.9033 -0.6296 18 1 8.4613 7.0407 0.4067 19 6 8.8514 8.0028 -1.4671 20 7 8.6333 9.2134 -0.9989 21 14 9.3210 7.7652 -3.2595 22 1 8.0918 7.5899 -4.0741 23 1 10.0663 8.9570 -3.7381 24 1 10.1781 6.5597 -3.3909 25 6 7.6745 3.7574 0.5696 26 6 3.9696 1.6993 1.4320 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 4.0059 2.5768 -1.7935 33 1 3.1804 3.5658 -0.5445 34 1 6.0554 2.6761 -0.6896 35 1 5.3608 4.1343 0.0722 36 1 8.6033 2.3195 3.4993 37 1 10.7405 3.3657 2.8826 38 1 10.9274 4.6654 0.8045 39 1 8.7168 9.9822 -1.5844 40 1 6.8175 3.8674 -0.0782 41 1 3.2843 2.3339 1.9939 42 1 4.1160 0.7493 1.9458 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417588009.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:24 Heat of formation + Delta-G solvation = -34.475964 kcal Electronic energy + Delta-G solvation = -24185.944552 eV Core-core repulsion = 20643.993567 eV Total energy + Delta-G solvation = -3541.950985 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.55448 -38.86038 -37.75731 -36.66254 -32.55734 -32.40655 -31.16830 -30.66467 -30.40119 -28.41804 -25.73903 -24.82181 -23.16800 -22.67453 -22.17980 -21.31600 -20.00332 -17.93337 -17.52322 -17.21873 -16.32402 -16.09822 -15.59536 -15.44318 -15.11810 -14.90749 -14.48728 -14.28109 -14.15342 -13.63038 -13.45794 -13.16519 -12.98457 -12.89312 -12.74265 -12.47535 -12.28232 -12.03463 -11.80752 -11.70611 -11.43498 -11.35426 -11.16069 -10.98674 -10.82556 -10.46768 -10.01083 -9.93818 -9.76447 -9.26857 -9.09227 -8.78623 -8.66157 -8.15517 -7.20150 -6.38189 -4.14834 1.12590 1.57838 2.71771 2.83766 2.98165 3.19820 3.33665 3.42676 3.44370 4.04353 4.16633 4.20561 4.35601 4.65449 4.68488 4.77676 4.83414 4.86065 4.96045 5.00349 5.02935 5.07423 5.17979 5.34566 5.37746 5.42861 5.55237 5.56817 5.62769 5.64697 5.69948 5.76476 5.78231 5.87033 5.93301 6.00944 6.25238 6.51637 6.64097 6.78009 6.89887 7.11243 7.39884 7.85739 8.16243 8.39583 9.05110 10.71067 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.012842 B = 0.003542 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.751338 B = 7902.130998 C = 9539.370446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.371 6.371 4 C 0.076 3.924 5 H 0.080 0.920 6 C -0.131 4.131 7 C 0.087 3.913 8 N -0.614 5.614 9 C 0.583 3.417 10 O -0.544 6.544 11 C -0.151 4.151 12 C -0.057 4.057 13 C -0.141 4.141 14 C -0.051 4.051 15 C -0.086 4.086 16 S -0.115 6.115 17 C -0.509 4.509 18 H 0.091 0.909 19 C 0.096 3.904 20 N -0.875 5.875 21 Si 0.853 3.147 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.236 1.236 25 C -0.082 4.082 26 C 0.090 3.910 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.272 0.728 40 H 0.163 0.837 41 H 0.078 0.922 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.503 -17.310 0.132 19.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.289 6.289 4 C 0.017 3.983 5 H 0.098 0.902 6 C -0.168 4.168 7 C -0.035 4.035 8 N -0.349 5.349 9 C 0.375 3.625 10 O -0.422 6.422 11 C -0.156 4.156 12 C -0.076 4.076 13 C -0.160 4.160 14 C -0.072 4.072 15 C -0.197 4.197 16 S 0.119 5.881 17 C -0.656 4.656 18 H 0.109 0.891 19 C -0.113 4.113 20 N -0.512 5.512 21 Si 0.678 3.322 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.159 1.159 25 C -0.102 4.102 26 C -0.033 4.033 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.150 0.850 39 H 0.082 0.918 40 H 0.180 0.820 41 H 0.096 0.904 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.438 -17.523 -0.396 19.907 hybrid contribution 0.178 0.483 0.577 0.773 sum -9.260 -17.040 0.181 19.394 Atomic orbital electron populations 1.21747 0.93578 1.02288 1.03279 1.22576 0.95752 0.83656 1.00262 1.87942 1.19649 1.26587 1.94732 1.23226 0.81538 0.98875 0.94667 0.90154 1.22841 0.96015 0.97546 1.00432 1.22689 0.97872 0.98801 0.84116 1.48123 1.14878 1.52710 1.19173 1.18061 0.82615 0.78875 0.82975 1.90734 1.82907 1.47240 1.21335 1.19721 0.93633 1.04276 0.97922 1.21190 0.91495 0.96895 0.98044 1.21124 0.97607 0.99629 0.97669 1.21972 0.98666 0.94004 0.92592 1.22141 0.94813 1.01313 1.01415 1.83012 1.93751 1.04466 1.06907 1.22248 1.54375 0.87965 1.01026 0.89097 1.24745 0.93657 0.94094 0.98852 1.69926 1.46776 0.97969 1.36484 0.86793 0.80500 0.80173 0.84745 1.19141 1.19765 1.15947 1.23192 0.98838 0.93226 0.94970 1.22585 0.84943 0.98208 0.97565 0.91747 0.91746 0.91088 0.93148 0.93202 0.88937 0.89004 0.89412 0.88875 0.85249 0.85524 0.85007 0.91774 0.82036 0.90382 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.05 0.41 6.49 37.16 0.24 0.65 16 3 O -0.37 -3.74 10.15 -35.23 -0.36 -4.09 16 4 C 0.08 0.74 3.54 -24.59 -0.09 0.65 16 5 H 0.08 0.68 7.83 -51.93 -0.41 0.28 16 6 C -0.13 -1.27 6.69 -24.90 -0.17 -1.44 16 7 C 0.09 1.05 4.87 -3.07 -0.01 1.03 16 8 N -0.61 -8.54 3.33 -175.16 -0.58 -9.13 16 9 C 0.58 9.81 7.81 -12.32 -0.10 9.71 16 10 O -0.54 -10.39 16.67 5.32 0.09 -10.30 16 11 C -0.15 -2.57 5.87 -105.00 -0.62 -3.19 16 12 C -0.06 -0.92 9.59 -39.12 -0.38 -1.29 16 13 C -0.14 -2.17 10.02 -39.68 -0.40 -2.57 16 14 C -0.05 -0.92 9.79 -39.26 -0.38 -1.30 16 15 C -0.09 -1.71 5.45 -39.00 -0.21 -1.92 16 16 S -0.12 -2.62 19.38 -107.50 -2.08 -4.70 16 17 C -0.51 -13.96 10.01 30.91 0.31 -13.65 16 18 H 0.09 2.74 8.02 -52.49 -0.42 2.32 16 19 C 0.10 2.65 5.50 -17.46 -0.10 2.55 16 20 N -0.88 -25.53 13.97 55.49 0.78 -24.76 16 21 Si 0.85 20.01 27.74 -169.99 -4.71 15.29 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.24 -5.33 6.74 56.52 0.38 -4.95 16 25 C -0.08 -1.45 8.34 -38.92 -0.32 -1.78 16 26 C 0.09 1.07 6.62 -2.53 -0.02 1.05 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.33 8.12 -51.93 -0.42 -0.09 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 34 H 0.09 1.01 6.68 -51.93 -0.35 0.67 16 35 H 0.09 1.23 6.79 -51.93 -0.35 0.88 16 36 H 0.13 1.92 7.66 -52.49 -0.40 1.52 16 37 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 38 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.16 2.61 2.77 -57.06 -0.16 2.45 16 41 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 LS Contribution 360.44 15.07 5.43 5.43 Total: -1.00 -31.95 360.44 -9.19 -41.14 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.89 Total: 3.18 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -1.86 Total: -12.07 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.19 Total: -33.88 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.27 Total: -14.39 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.71 Total: 15.29 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -2.08 Total: -4.70 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.95 -9.19 -41.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417588009.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.661 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds