Wall clock time and date at job start Sat Apr 11 2020 00:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47353 * 2 1 4 4 C 1.42901 * 114.00240 * 180.02562 * 3 2 1 5 5 H 1.09001 * 110.88181 * 26.12724 * 4 3 2 6 6 C 1.55153 * 111.00289 * 150.00093 * 4 3 2 7 7 C 1.54322 * 102.94191 * 153.57758 * 6 4 3 8 8 N 1.47019 * 107.27134 * 337.80723 * 7 6 4 9 9 C 1.34781 * 125.64903 * 178.89143 * 8 7 6 10 10 O 1.21549 * 119.99844 * 174.89668 * 9 8 7 11 11 C 1.47858 * 119.99992 * 354.89997 * 9 8 7 12 12 C 1.39675 * 120.09831 * 187.78440 * 11 9 8 13 13 C 1.38042 * 120.03125 * 179.78558 * 12 11 9 14 14 C 1.38176 * 120.25013 * 0.47400 * 13 12 11 15 15 C 1.39176 * 120.20002 * 359.77871 * 14 13 12 16 16 S 1.76201 * 120.02296 * 179.97438 * 15 14 13 17 17 C 1.76200 * 99.99944 * 275.01290 * 16 15 14 18 18 H 1.08000 * 120.00129 * 354.99176 * 17 16 15 19 19 C 1.38724 * 119.99990 * 174.99944 * 17 16 15 20 20 N 1.31626 * 119.99970 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00198 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.46967 * 90.00272 * 21 19 17 23 23 H 1.48495 * 109.47088 * 210.00532 * 21 19 17 24 24 H 1.48499 * 109.46724 * 330.00289 * 21 19 17 25 25 C 1.38877 * 119.96157 * 359.97438 * 15 14 13 26 26 C 1.47425 * 108.70478 * 358.94291 * 8 7 6 27 27 H 1.09001 * 109.46446 * 299.99366 * 1 2 3 28 28 H 1.08997 * 109.46881 * 59.99742 * 1 2 3 29 29 H 1.09003 * 109.46911 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47158 * 240.00412 * 2 1 3 31 31 H 1.08994 * 109.47579 * 120.00433 * 2 1 3 32 32 H 1.08998 * 110.72341 * 271.94273 * 6 4 3 33 33 H 1.09010 * 110.72248 * 35.21911 * 6 4 3 34 34 H 1.09004 * 109.88355 * 97.22622 * 7 6 4 35 35 H 1.09000 * 109.88385 * 218.39432 * 7 6 4 36 36 H 1.07992 * 119.98182 * 0.02562 * 12 11 9 37 37 H 1.08007 * 119.87346 * 180.23263 * 13 12 11 38 38 H 1.08002 * 119.90168 * 179.76787 * 14 13 12 39 39 H 0.96999 * 119.99917 * 179.97438 * 20 19 17 40 40 H 1.07998 * 120.12709 * 180.02562 * 25 15 14 41 41 H 1.08997 * 110.36357 * 265.28954 * 26 8 7 42 42 H 1.08992 * 110.37117 * 142.96300 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 -0.0006 5 1 3.8903 0.5793 -0.4494 6 6 3.8860 2.7546 -0.7248 7 6 5.2477 3.0589 -0.0657 8 7 5.2614 2.3834 1.2400 9 6 6.2857 2.3877 2.1161 10 8 6.1533 1.8714 3.2085 11 6 7.5704 3.0205 1.7482 12 6 8.6817 2.8865 2.5836 13 6 9.8817 3.4742 2.2366 14 6 9.9869 4.2048 1.0686 15 6 8.8845 4.3493 0.2315 16 16 9.0237 5.2826 -1.2566 17 6 8.7325 6.9033 -0.6296 18 1 8.4613 7.0407 0.4067 19 6 8.8514 8.0028 -1.4671 20 7 8.6333 9.2134 -0.9989 21 14 9.3210 7.7652 -3.2595 22 1 8.0918 7.5899 -4.0741 23 1 10.0663 8.9570 -3.7381 24 1 10.1781 6.5597 -3.3909 25 6 7.6745 3.7574 0.5696 26 6 3.9696 1.6993 1.4320 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 4.0059 2.5768 -1.7935 33 1 3.1804 3.5658 -0.5445 34 1 6.0554 2.6761 -0.6896 35 1 5.3608 4.1343 0.0722 36 1 8.6033 2.3195 3.4993 37 1 10.7405 3.3657 2.8826 38 1 10.9274 4.6654 0.8045 39 1 8.7168 9.9822 -1.5844 40 1 6.8175 3.8674 -0.0782 41 1 3.2843 2.3339 1.9939 42 1 4.1160 0.7493 1.9458 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417588009.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:23 Heat of formation + Delta-G solvation = -53.607793 kcal Electronic energy + Delta-G solvation = -24186.774170 eV Core-core repulsion = 20643.993567 eV Total energy + Delta-G solvation = -3542.780604 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.73177 -39.86843 -39.00091 -37.66670 -34.67679 -33.39011 -32.17840 -32.01777 -31.31651 -29.41959 -27.88249 -25.96878 -23.97339 -23.80531 -23.31297 -22.25492 -21.26861 -19.76955 -18.60559 -18.29479 -17.67093 -17.15159 -17.06291 -16.59955 -16.46917 -16.07947 -15.81660 -15.43158 -15.17156 -14.94111 -14.79353 -14.42406 -14.20134 -13.89774 -13.83290 -13.63289 -13.36906 -13.14749 -13.10384 -13.02757 -12.87577 -12.48759 -12.34935 -12.09463 -11.93744 -11.77654 -11.63762 -11.22810 -11.17702 -10.88425 -10.58841 -10.07607 -9.91960 -9.69131 -9.09688 -8.49240 -6.23997 -0.24943 0.18307 1.10701 1.35218 1.48713 1.61607 1.65408 1.72629 2.25520 2.57018 2.67692 2.89159 2.95698 3.19578 3.46691 3.57892 3.90381 3.91719 4.04088 4.08528 4.17361 4.20773 4.28862 4.32556 4.40485 4.48298 4.51703 4.57919 4.64633 4.65215 4.78136 4.88866 4.94306 5.00235 5.05996 5.09162 5.22171 5.30118 5.31227 5.38406 5.72746 5.78003 6.15562 6.19667 6.21510 6.87945 6.92825 8.64076 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.012842 B = 0.003542 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.751338 B = 7902.130998 C = 9539.370446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.386 6.386 4 C 0.087 3.913 5 H 0.099 0.901 6 C -0.123 4.123 7 C 0.083 3.917 8 N -0.610 5.610 9 C 0.579 3.421 10 O -0.573 6.573 11 C -0.159 4.159 12 C -0.054 4.054 13 C -0.128 4.128 14 C -0.061 4.061 15 C -0.119 4.119 16 S -0.096 6.096 17 C -0.524 4.524 18 H 0.044 0.956 19 C 0.042 3.958 20 N -0.922 5.922 21 Si 0.918 3.082 22 H -0.256 1.256 23 H -0.265 1.265 24 H -0.221 1.221 25 C -0.082 4.082 26 C 0.086 3.914 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.145 0.855 37 H 0.165 0.835 38 H 0.136 0.864 39 H 0.277 0.723 40 H 0.174 0.826 41 H 0.069 0.931 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.493 -19.410 -1.150 21.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.304 6.304 4 C 0.028 3.972 5 H 0.117 0.883 6 C -0.161 4.161 7 C -0.039 4.039 8 N -0.343 5.343 9 C 0.370 3.630 10 O -0.454 6.454 11 C -0.164 4.164 12 C -0.073 4.073 13 C -0.147 4.147 14 C -0.081 4.081 15 C -0.230 4.230 16 S 0.138 5.862 17 C -0.671 4.671 18 H 0.062 0.938 19 C -0.163 4.163 20 N -0.560 5.560 21 Si 0.738 3.262 22 H -0.181 1.181 23 H -0.190 1.190 24 H -0.144 1.144 25 C -0.102 4.102 26 C -0.037 4.037 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.134 0.866 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.163 0.837 37 H 0.183 0.817 38 H 0.154 0.846 39 H 0.086 0.914 40 H 0.191 0.809 41 H 0.088 0.912 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.452 -19.637 -1.694 21.859 hybrid contribution 0.090 1.053 1.152 1.563 sum -9.361 -18.585 -0.542 20.816 Atomic orbital electron populations 1.21769 0.92871 1.03395 1.02730 1.22799 0.96403 0.82637 1.01179 1.87934 1.19529 1.28308 1.94673 1.23143 0.81742 0.99464 0.92854 0.88268 1.22827 0.94231 0.97528 1.01510 1.22763 0.99842 0.97766 0.83497 1.48175 1.14851 1.52040 1.19248 1.18051 0.83127 0.78794 0.83009 1.90711 1.83494 1.48738 1.22481 1.19885 0.94384 1.04269 0.97828 1.21516 0.91348 0.96245 0.98201 1.21444 0.98602 0.97830 0.96860 1.22125 0.98325 0.94445 0.93245 1.22147 0.96603 1.02778 1.01460 1.82536 1.93707 1.01163 1.08809 1.22397 1.54018 0.91436 0.99231 0.93758 1.25722 0.93385 0.93593 1.03640 1.70046 1.48262 0.99135 1.38545 0.85824 0.80798 0.80813 0.78735 1.18053 1.18987 1.14437 1.23314 0.98574 0.92837 0.95492 1.22737 0.83831 0.97755 0.99359 0.92557 0.92018 0.89182 0.91697 0.92778 0.86593 0.89435 0.88551 0.90398 0.83703 0.81734 0.84640 0.91381 0.80942 0.91224 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.28 71.98 0.74 -0.93 16 2 C 0.05 0.60 6.49 71.98 0.47 1.07 16 3 O -0.39 -7.11 10.15 -148.98 -1.51 -8.62 16 4 C 0.09 1.52 3.54 31.98 0.11 1.64 16 5 H 0.10 1.40 7.83 -2.39 -0.02 1.38 16 6 C -0.12 -2.19 6.69 31.78 0.21 -1.97 16 7 C 0.08 1.92 4.87 86.73 0.42 2.34 16 8 N -0.61 -16.62 3.33 -826.36 -2.75 -19.37 16 9 C 0.58 19.24 7.81 86.79 0.68 19.92 16 10 O -0.57 -21.72 16.67 -3.87 -0.06 -21.79 16 11 C -0.16 -5.31 5.87 -20.11 -0.12 -5.43 16 12 C -0.05 -1.65 9.59 22.57 0.22 -1.44 16 13 C -0.13 -3.68 10.02 22.21 0.22 -3.46 16 14 C -0.06 -2.11 9.79 22.48 0.22 -1.89 16 15 C -0.12 -4.70 5.45 22.65 0.12 -4.58 16 16 S -0.10 -4.33 19.38 -56.49 -1.09 -5.42 16 17 C -0.52 -29.49 10.01 67.94 0.68 -28.82 16 18 H 0.04 2.81 8.02 -2.91 -0.02 2.79 16 19 C 0.04 2.34 5.50 84.84 0.47 2.81 16 20 N -0.92 -55.23 13.97 21.63 0.30 -54.93 16 21 Si 0.92 40.99 27.74 68.60 1.90 42.89 16 22 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 24 H -0.22 -9.29 6.74 99.48 0.67 -8.62 16 25 C -0.08 -2.89 8.34 22.70 0.19 -2.70 16 26 C 0.09 1.97 6.62 86.85 0.58 2.54 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.67 8.12 -2.39 -0.02 0.65 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.10 2.10 6.68 -2.39 -0.02 2.08 16 35 H 0.08 2.07 6.79 -2.39 -0.02 2.05 16 36 H 0.15 4.00 7.66 -2.91 -0.02 3.98 16 37 H 0.17 3.46 8.06 -2.91 -0.02 3.43 16 38 H 0.14 4.56 8.06 -2.91 -0.02 4.53 16 39 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 40 H 0.17 5.55 2.77 -7.21 -0.02 5.53 16 41 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.08 1.80 8.09 -2.39 -0.02 1.78 16 Total: -1.00 -70.49 360.44 2.97 -67.52 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.98 Total: 20.64 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 5.21 Total: -20.91 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: -2.45 Total: -74.30 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -1.58 Total: -30.41 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 1.90 Total: 42.89 kcal Atomic # 16 Polarization: -4.33 SS G_CDS: -1.09 Total: -5.42 kcal Total: -70.49 2.97 -67.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417588009.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.913 kcal (2) G-P(sol) polarization free energy of solvation -70.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds