Wall clock time and date at job start Sat Apr 11 2020 00:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47356 * 2 1 4 4 O 1.42892 * 109.47219 * 239.99987 * 2 1 3 5 5 C 1.53004 * 109.46884 * 119.99729 * 2 1 3 6 6 N 1.46505 * 109.46958 * 184.99980 * 5 2 1 7 7 C 1.34775 * 120.00049 * 106.42516 * 6 5 2 8 8 O 1.21554 * 120.00093 * 178.32680 * 7 6 5 9 9 C 1.47861 * 120.00018 * 358.33486 * 7 6 5 10 10 C 1.39679 * 120.10088 * 330.29366 * 9 7 6 11 11 C 1.38032 * 120.03699 * 180.02562 * 10 9 7 12 12 C 1.38184 * 120.24646 * 359.68156 * 11 10 9 13 13 C 1.39179 * 120.19935 * 0.60245 * 12 11 10 14 14 S 1.76201 * 120.02047 * 179.69735 * 13 12 11 15 15 C 1.76199 * 99.99801 * 264.77110 * 14 13 12 16 16 H 1.08007 * 120.00308 * 5.00848 * 15 14 13 17 17 C 1.38725 * 119.99908 * 185.00967 * 15 14 13 18 18 N 1.31625 * 119.99975 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00130 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47102 * 89.99847 * 19 17 15 21 21 H 1.48500 * 109.47041 * 210.00203 * 19 17 15 22 22 H 1.48499 * 109.47000 * 329.99758 * 19 17 15 23 23 C 1.38876 * 119.95807 * 359.41521 * 13 12 11 24 24 C 1.46508 * 119.99923 * 286.42983 * 6 5 2 25 25 C 1.52999 * 117.49729 * 197.28900 * 24 6 5 26 26 C 1.52994 * 117.49727 * 128.62901 * 24 6 5 27 27 H 1.08999 * 109.46893 * 300.00106 * 1 2 3 28 28 H 1.08995 * 109.46827 * 59.99751 * 1 2 3 29 29 H 1.08999 * 109.46683 * 180.02562 * 1 2 3 30 30 H 0.96708 * 113.99793 * 299.99482 * 4 2 1 31 31 H 1.08996 * 109.47249 * 65.00126 * 5 2 1 32 32 H 1.08995 * 109.47413 * 304.99673 * 5 2 1 33 33 H 1.08004 * 119.97931 * 0.02671 * 10 9 7 34 34 H 1.08006 * 119.87656 * 180.02562 * 11 10 9 35 35 H 1.08000 * 119.89843 * 180.32002 * 12 11 10 36 36 H 0.96999 * 120.00084 * 179.97438 * 18 17 15 37 37 H 1.07993 * 120.12116 * 180.25450 * 23 13 12 38 38 H 1.08995 * 115.54763 * 342.95824 * 24 6 5 39 39 H 1.09007 * 117.49802 * 359.97438 * 25 24 6 40 40 H 1.08995 * 117.50159 * 145.02025 * 25 24 6 41 41 H 1.08998 * 117.50128 * 214.97467 * 26 24 6 42 42 H 1.09001 * 117.50287 * 359.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 7 3.5001 -0.6178 1.3110 7 6 4.0801 0.2061 2.2061 8 8 5.2918 0.2691 2.2780 9 6 3.2424 1.0332 3.1007 10 6 1.9817 1.4634 2.6804 11 6 1.2010 2.2359 3.5164 12 6 1.6587 2.5817 4.7736 13 6 2.9157 2.1635 5.2004 14 16 3.4979 2.6138 6.8014 15 6 4.4350 4.0491 6.3935 16 1 4.4307 4.4275 5.3819 17 6 5.1784 4.6932 7.3718 18 7 5.8788 5.7652 7.0670 19 14 5.1865 4.0385 9.1212 20 1 6.2913 3.0585 9.2779 21 1 5.3846 5.1636 10.0700 22 1 3.8901 3.3728 9.4066 23 6 3.7083 1.3862 4.3661 24 6 4.3297 -1.4101 0.3997 25 6 5.8071 -1.5818 0.7583 26 6 5.4018 -0.6704 -0.4029 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.7211 -1.5953 -1.2328 31 1 1.7516 -1.7714 1.2057 32 1 1.6054 -0.2617 2.1370 33 1 1.6176 1.1913 1.7006 34 1 0.2264 2.5668 3.1889 35 1 1.0411 3.1821 5.4251 36 1 6.3983 6.2158 7.7511 37 1 4.6824 1.0569 4.6962 38 1 3.8283 -2.2486 -0.0834 39 1 6.1620 -1.1049 1.6720 40 1 6.2779 -2.5331 0.5107 41 1 5.6062 -1.0226 -1.4139 42 1 5.4897 0.4057 -0.2532 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001452662311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:33 Heat of formation + Delta-G solvation = -21.464260 kcal Electronic energy + Delta-G solvation = -24868.741775 eV Core-core repulsion = 21327.355020 eV Total energy + Delta-G solvation = -3541.386755 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.04657 -39.63355 -38.87198 -37.17878 -35.47678 -34.74027 -32.38680 -31.98254 -31.66460 -27.94956 -27.40741 -25.49894 -24.08190 -23.29609 -23.00072 -22.76754 -20.90878 -19.84400 -18.73038 -18.12703 -17.46754 -17.13843 -17.06440 -16.87582 -16.36867 -15.97973 -15.66299 -15.49807 -15.03899 -14.98656 -14.81298 -14.55383 -14.16893 -14.05033 -13.74661 -13.44248 -13.18640 -13.09193 -12.91530 -12.71606 -12.54698 -12.50236 -12.33785 -12.06523 -11.86842 -11.68533 -11.37292 -11.24001 -11.10406 -11.01641 -10.52408 -10.02738 -9.74529 -9.42448 -9.16290 -8.55647 -6.30501 -0.24030 0.13377 1.03754 1.30107 1.41992 1.53119 1.67745 1.78443 2.19766 2.46883 2.82549 2.87058 3.00182 3.25053 3.41600 3.75495 3.86227 3.93633 3.96045 4.00344 4.09965 4.13487 4.20036 4.28695 4.38069 4.43744 4.56207 4.67086 4.72302 4.81068 4.84385 4.95556 5.02423 5.10789 5.16196 5.21609 5.34674 5.38369 5.39224 5.66515 5.69515 5.77389 6.08242 6.21116 6.86323 6.94614 7.02544 8.58337 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.018252 B = 0.003523 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.728871 B = 7946.755982 C = 8919.169601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.086 3.914 3 H 0.081 0.919 4 O -0.566 6.566 5 C 0.044 3.956 6 N -0.568 5.568 7 C 0.552 3.448 8 O -0.565 6.565 9 C -0.156 4.156 10 C -0.089 4.089 11 C -0.118 4.118 12 C -0.058 4.058 13 C -0.116 4.116 14 S -0.108 6.108 15 C -0.528 4.528 16 H 0.042 0.958 17 C 0.040 3.960 18 N -0.921 5.921 19 Si 0.924 3.076 20 H -0.262 1.262 21 H -0.257 1.257 22 H -0.224 1.224 23 C -0.044 4.044 24 C 0.097 3.903 25 C -0.218 4.218 26 C -0.183 4.183 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.389 0.611 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.178 0.822 34 H 0.182 0.818 35 H 0.144 0.856 36 H 0.278 0.722 37 H 0.104 0.896 38 H 0.168 0.832 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.119 0.881 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.116 -17.970 -15.596 28.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.026 3.974 3 H 0.098 0.902 4 O -0.374 6.374 5 C -0.078 4.078 6 N -0.296 5.296 7 C 0.343 3.657 8 O -0.446 6.446 9 C -0.161 4.161 10 C -0.107 4.107 11 C -0.137 4.137 12 C -0.079 4.079 13 C -0.227 4.227 14 S 0.126 5.874 15 C -0.675 4.675 16 H 0.061 0.939 17 C -0.165 4.165 18 N -0.558 5.558 19 Si 0.744 3.256 20 H -0.187 1.187 21 H -0.181 1.181 22 H -0.147 1.147 23 C -0.066 4.066 24 C -0.006 4.006 25 C -0.256 4.256 26 C -0.221 4.221 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.238 0.762 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.194 0.806 34 H 0.199 0.801 35 H 0.162 0.838 36 H 0.088 0.912 37 H 0.122 0.878 38 H 0.185 0.815 39 H 0.121 0.879 40 H 0.129 0.871 41 H 0.137 0.863 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.270 -17.709 -14.543 27.537 hybrid contribution 1.140 0.695 -0.258 1.359 sum -14.131 -17.014 -14.801 26.612 Atomic orbital electron populations 1.22473 0.93043 1.04580 1.03950 1.22313 0.94816 0.96055 0.84194 0.90152 1.86664 1.77410 1.30258 1.43025 1.23452 0.77898 1.04895 1.01521 1.47158 1.07784 1.40919 1.33724 1.18683 0.87090 0.79718 0.80234 1.90618 1.15698 1.67155 1.71168 1.19954 0.97181 1.03989 0.94947 1.22351 0.91289 0.95331 1.01683 1.21610 1.02051 0.97567 0.92451 1.22105 0.93552 0.95280 0.96944 1.22096 0.98409 1.02256 0.99923 1.82532 1.64388 1.34190 1.06285 1.22400 1.33852 1.12321 0.98923 0.93934 1.25766 0.92729 0.94264 1.03697 1.70042 1.29355 1.19940 1.36481 0.85750 0.81858 0.79568 0.78426 1.18712 1.18076 1.14686 1.21570 0.97852 0.94270 0.92877 1.21857 0.86871 0.96957 0.94924 1.23949 0.97897 1.01986 1.01728 1.23085 1.04604 0.97384 0.97036 0.89975 0.91379 0.89844 0.76159 0.86764 0.86430 0.80569 0.80120 0.83829 0.91233 0.87777 0.81458 0.87897 0.87127 0.86312 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.99 9.45 71.98 0.68 -0.31 16 2 C 0.09 0.96 2.87 30.60 0.09 1.04 16 3 H 0.08 1.29 7.03 -2.39 -0.02 1.28 16 4 O -0.57 -6.59 11.98 -148.98 -1.78 -8.37 16 5 C 0.04 0.56 4.66 86.38 0.40 0.96 16 6 N -0.57 -12.86 2.89 -801.19 -2.31 -15.17 16 7 C 0.55 18.39 7.23 86.79 0.63 19.02 16 8 O -0.57 -23.70 12.52 -3.88 -0.05 -23.75 16 9 C -0.16 -5.19 5.48 -20.11 -0.11 -5.30 16 10 C -0.09 -2.10 7.40 22.57 0.17 -1.93 16 11 C -0.12 -2.70 10.02 22.21 0.22 -2.48 16 12 C -0.06 -1.90 9.79 22.48 0.22 -1.68 16 13 C -0.12 -4.90 5.45 22.65 0.12 -4.78 16 14 S -0.11 -5.36 19.38 -56.49 -1.09 -6.45 16 15 C -0.53 -32.20 10.00 67.94 0.68 -31.52 16 16 H 0.04 2.90 8.02 -2.91 -0.02 2.87 16 17 C 0.04 2.43 5.50 84.84 0.47 2.89 16 18 N -0.92 -58.09 13.97 21.63 0.30 -57.79 16 19 Si 0.92 44.25 27.74 68.60 1.90 46.15 16 20 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 22 H -0.22 -10.06 6.74 99.48 0.67 -9.39 16 23 C -0.04 -1.83 9.34 22.70 0.21 -1.62 16 24 C 0.10 1.97 5.41 44.99 0.24 2.22 16 25 C -0.22 -5.59 9.64 30.62 0.30 -5.30 16 26 C -0.18 -4.45 9.89 30.62 0.30 -4.14 16 27 H 0.08 0.31 7.81 -2.39 -0.02 0.30 16 28 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.39 1.10 9.05 -74.05 -0.67 0.43 16 31 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.12 1.60 4.15 -2.39 -0.01 1.59 16 33 H 0.18 2.82 2.60 -2.91 -0.01 2.81 16 34 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 36 H 0.28 16.09 8.31 -92.71 -0.77 15.32 16 37 H 0.10 4.91 7.92 -2.91 -0.02 4.89 16 38 H 0.17 1.94 8.02 -2.39 -0.02 1.92 16 39 H 0.10 3.61 5.02 -20.07 -0.10 3.51 16 40 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.06 1.81 7.75 -2.39 -0.02 1.79 16 Total: -1.00 -82.98 354.04 1.85 -81.14 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.26 Total: 17.17 kcal Atomic # 6 Polarization: -37.54 SS G_CDS: 4.62 Total: -32.92 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -2.01 Total: -72.96 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -1.83 Total: -32.13 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.90 Total: 46.15 kcal Atomic # 16 Polarization: -5.36 SS G_CDS: -1.09 Total: -6.45 kcal Total: -82.98 1.85 -81.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001452662311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.672 kcal (2) G-P(sol) polarization free energy of solvation -82.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds