Wall clock time and date at job start Sat Apr 11 2020 00:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47267 * 2 1 4 4 N 1.46507 * 109.46966 * 119.99637 * 2 1 3 5 5 C 1.34770 * 120.00021 * 273.62262 * 4 2 1 6 6 O 1.21550 * 120.00475 * 359.97438 * 5 4 2 7 7 C 1.47872 * 120.00023 * 180.02562 * 5 4 2 8 8 C 1.39668 * 120.09763 * 359.97438 * 7 5 4 9 9 C 1.38037 * 120.03768 * 180.02562 * 8 7 5 10 10 C 1.38179 * 120.24495 * 359.67203 * 9 8 7 11 11 C 1.39182 * 120.19804 * 0.60490 * 10 9 8 12 12 S 1.76205 * 120.01853 * 179.69172 * 11 10 9 13 13 C 1.76197 * 100.00108 * 265.06589 * 12 11 10 14 14 H 1.08007 * 119.99966 * 5.07061 * 13 12 11 15 15 C 1.38728 * 119.99733 * 185.06253 * 13 12 11 16 16 N 1.31629 * 119.99576 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00128 * 0.02562 * 15 13 12 18 18 H 1.48508 * 109.47199 * 89.99678 * 17 15 13 19 19 H 1.48503 * 109.47129 * 209.99309 * 17 15 13 20 20 H 1.48490 * 109.47192 * 329.99708 * 17 15 13 21 21 C 1.38870 * 119.96031 * 359.42612 * 11 10 9 22 22 C 1.52994 * 109.47407 * 240.00009 * 2 1 3 23 23 C 1.52997 * 115.55331 * 150.45029 * 22 2 1 24 24 O 1.42910 * 109.46736 * 294.88368 * 23 22 2 25 25 C 1.53008 * 117.49777 * 4.73614 * 22 2 1 26 26 C 1.53001 * 117.49656 * 296.11565 * 22 2 1 27 27 H 1.09007 * 109.47132 * 300.00202 * 1 2 3 28 28 H 1.08998 * 109.46749 * 59.99736 * 1 2 3 29 29 H 1.08992 * 109.47136 * 180.02562 * 1 2 3 30 30 H 0.96997 * 119.99609 * 93.62096 * 4 2 1 31 31 H 1.08001 * 119.98284 * 0.02562 * 8 7 5 32 32 H 1.08003 * 119.87913 * 180.02562 * 9 8 7 33 33 H 1.08002 * 119.90203 * 180.32021 * 10 9 8 34 34 H 0.97005 * 119.99308 * 180.02562 * 16 15 13 35 35 H 1.08000 * 120.12604 * 180.25897 * 21 11 10 36 36 H 1.08999 * 109.47227 * 54.88282 * 23 22 2 37 37 H 1.09002 * 109.47259 * 174.88998 * 23 22 2 38 38 H 0.96695 * 114.00082 * 179.97438 * 24 23 22 39 39 H 1.08994 * 117.49639 * 0.02562 * 25 22 2 40 40 H 1.08997 * 117.49323 * 145.02277 * 25 22 2 41 41 H 1.08997 * 117.49962 * 214.97703 * 26 22 2 42 42 H 1.09000 * 117.50028 * 0.02562 * 26 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1734 -0.0117 2.3501 6 8 1.9086 1.1736 2.3983 7 6 2.6668 -0.7086 3.5574 8 6 2.9723 -2.0704 3.5044 9 6 3.4323 -2.7198 4.6322 10 6 3.5991 -2.0260 5.8155 11 6 3.2923 -0.6700 5.8812 12 16 3.4992 0.2083 7.3947 13 6 1.8632 0.0967 8.0392 14 1 1.1180 -0.4900 7.5225 15 6 1.5323 0.7624 9.2105 16 7 0.3102 0.6786 9.6923 17 14 2.8210 1.7775 10.1039 18 1 2.7918 3.1727 9.5959 19 1 2.5309 1.7750 11.5603 20 1 4.1647 1.1921 9.8658 21 6 2.8284 -0.0084 4.7518 22 6 2.0401 -0.7212 -1.2492 23 6 3.3922 -0.2426 -1.7817 24 8 3.2748 1.1078 -2.2344 25 6 1.0004 -1.1826 -2.2725 26 6 1.7123 -2.2091 -1.3891 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 2.2300 -1.6364 1.1578 31 1 2.8485 -2.6157 2.5804 32 1 3.6681 -3.7729 4.5882 33 1 3.9643 -2.5385 6.6932 34 1 0.0788 1.1444 10.5112 35 1 2.5935 1.0447 4.7986 36 1 4.1355 -0.2958 -0.9862 37 1 3.7016 -0.8783 -2.6113 38 1 4.0962 1.4776 -2.5858 39 1 -0.0469 -0.9720 -2.0560 40 1 1.2796 -1.1451 -3.3255 41 1 2.4598 -2.8469 -1.8609 42 1 1.1330 -2.6741 -0.5914 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001453160757.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:38 Heat of formation + Delta-G solvation = -39.127661 kcal Electronic energy + Delta-G solvation = -24005.514628 eV Core-core repulsion = 20463.361930 eV Total energy + Delta-G solvation = -3542.152698 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.42321 -39.12241 -37.73516 -36.34033 -34.27262 -32.49250 -31.46075 -30.64039 -29.61858 -27.69802 -25.67466 -24.56261 -23.02424 -22.75906 -22.24612 -20.33968 -19.52471 -18.25765 -17.68237 -17.32841 -16.37048 -16.22843 -15.58611 -15.37701 -15.11329 -14.86404 -14.66851 -14.38931 -14.16242 -13.67729 -13.43672 -13.15951 -12.97398 -12.88347 -12.60864 -12.37672 -11.96263 -11.75579 -11.61380 -11.42975 -11.35174 -11.18998 -11.09330 -10.77301 -10.62571 -10.50795 -10.19764 -9.92351 -9.72000 -9.22745 -9.12525 -9.07399 -8.63912 -8.15611 -7.12958 -6.32335 -4.07822 1.11602 1.59481 2.83345 2.95187 3.06776 3.27953 3.38753 3.39098 3.51748 3.94106 4.07736 4.25966 4.26936 4.32107 4.53106 4.77497 4.82549 4.90297 5.00800 5.03385 5.06689 5.14062 5.18188 5.19731 5.25142 5.39113 5.47256 5.54228 5.65169 5.65385 5.73751 5.79239 5.86074 5.98266 6.11445 6.18712 6.44619 6.53093 6.57287 6.83509 7.11409 7.29096 7.52613 7.91896 8.31951 8.45220 9.11551 10.77139 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.021847 B = 0.002751 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.352759 B =10175.939154 C =10434.692013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.182 3.818 3 H 0.101 0.899 4 N -0.726 5.726 5 C 0.564 3.436 6 O -0.532 6.532 7 C -0.152 4.152 8 C -0.086 4.086 9 C -0.139 4.139 10 C -0.052 4.052 11 C -0.085 4.085 12 S -0.113 6.113 13 C -0.509 4.509 14 H 0.091 0.909 15 C 0.095 3.905 16 N -0.876 5.876 17 Si 0.858 3.142 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.239 1.239 21 C -0.017 4.017 22 C -0.138 4.138 23 C 0.114 3.886 24 O -0.567 6.567 25 C -0.158 4.158 26 C -0.168 4.168 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.396 0.604 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.272 0.728 35 H 0.140 0.860 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.380 0.620 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.220 -7.954 -23.937 25.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.078 3.922 3 H 0.119 0.881 4 N -0.379 5.379 5 C 0.352 3.648 6 O -0.409 6.409 7 C -0.157 4.157 8 C -0.105 4.105 9 C -0.159 4.159 10 C -0.073 4.073 11 C -0.195 4.195 12 S 0.121 5.879 13 C -0.656 4.656 14 H 0.109 0.891 15 C -0.114 4.114 16 N -0.512 5.512 17 Si 0.683 3.317 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.163 1.163 21 C -0.039 4.039 22 C -0.139 4.139 23 C 0.037 3.963 24 O -0.372 6.372 25 C -0.195 4.195 26 C -0.205 4.205 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.232 0.768 31 H 0.136 0.864 32 H 0.143 0.857 33 H 0.151 0.849 34 H 0.082 0.918 35 H 0.158 0.842 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.227 0.773 39 H 0.124 0.876 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.202 -6.578 -23.051 24.760 hybrid contribution -0.118 -0.628 -0.232 0.680 sum 6.083 -7.206 -23.282 25.120 Atomic orbital electron populations 1.22298 0.95163 1.01977 1.02919 1.20255 0.93657 0.97243 0.81080 0.88109 1.46020 1.68696 1.13285 1.09861 1.18373 0.76987 0.86542 0.82887 1.90780 1.50209 1.15271 1.84615 1.19864 1.07005 0.94491 0.94308 1.21162 0.97983 0.93159 0.98244 1.21039 1.02084 0.99845 0.92953 1.21891 0.94682 0.93205 0.97559 1.22191 1.01770 0.96569 0.98991 1.83063 1.19306 1.71756 1.13743 1.22242 0.93563 1.37065 1.12683 0.89098 1.24746 0.95328 0.95238 0.96089 1.69933 1.17900 1.41861 1.21521 0.86730 0.83271 0.81944 0.79797 1.19015 1.19802 1.16335 1.21902 0.91548 1.00588 0.89834 1.21654 0.96959 0.96951 0.98347 1.21562 0.94499 0.83243 0.97031 1.86502 1.38746 1.27800 1.84166 1.23169 0.98204 1.01916 0.96258 1.23053 1.03655 0.90472 1.03362 0.91591 0.91249 0.92473 0.76818 0.86424 0.85658 0.84929 0.91810 0.84182 0.93001 0.93486 0.77307 0.87555 0.88498 0.88320 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 8.07 37.16 0.30 -1.47 16 2 C 0.18 2.04 2.68 -67.93 -0.18 1.86 16 3 H 0.10 1.43 7.21 -51.93 -0.37 1.06 16 4 N -0.73 -8.55 4.99 -54.74 -0.27 -8.83 16 5 C 0.56 9.18 7.75 -12.32 -0.10 9.08 16 6 O -0.53 -10.71 15.98 5.32 0.09 -10.63 16 7 C -0.15 -2.54 5.87 -104.99 -0.62 -3.15 16 8 C -0.09 -1.15 9.54 -39.12 -0.37 -1.53 16 9 C -0.14 -1.93 10.02 -39.68 -0.40 -2.33 16 10 C -0.05 -0.91 9.79 -39.25 -0.38 -1.30 16 11 C -0.08 -1.77 5.45 -39.00 -0.21 -1.98 16 12 S -0.11 -2.75 19.38 -107.50 -2.08 -4.83 16 13 C -0.51 -14.69 10.01 30.91 0.31 -14.38 16 14 H 0.09 2.85 8.02 -52.48 -0.42 2.43 16 15 C 0.09 2.75 5.50 -17.46 -0.10 2.66 16 16 N -0.88 -26.47 13.97 55.49 0.78 -25.70 16 17 Si 0.86 21.15 27.74 -169.99 -4.71 16.44 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.24 -5.69 6.74 56.52 0.38 -5.31 16 21 C -0.02 -0.35 9.34 -38.92 -0.36 -0.71 16 22 C -0.14 -1.15 2.02 -154.51 -0.31 -1.46 16 23 C 0.11 0.89 6.85 37.16 0.25 1.14 16 24 O -0.57 -5.03 13.39 -35.23 -0.47 -5.50 16 25 C -0.16 -1.10 9.24 -26.73 -0.25 -1.35 16 26 C -0.17 -1.04 8.96 -26.73 -0.24 -1.27 16 27 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 28 H 0.07 0.65 7.17 -51.93 -0.37 0.28 16 29 H 0.06 0.52 7.16 -51.93 -0.37 0.15 16 30 H 0.40 3.60 5.89 -40.82 -0.24 3.36 16 31 H 0.12 1.09 6.40 -52.49 -0.34 0.75 16 32 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 33 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 34 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.14 3.06 7.65 -52.49 -0.40 2.66 16 36 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.28 8.09 -51.93 -0.42 -0.14 16 38 H 0.38 1.69 9.12 45.56 0.42 2.11 16 39 H 0.11 0.73 5.82 -51.93 -0.30 0.43 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.60 7.68 -51.93 -0.40 0.20 16 LS Contribution 364.68 15.07 5.50 5.50 Total: -1.00 -34.62 364.68 -8.76 -43.38 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -4.92 Total: 6.35 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -2.66 Total: -16.18 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.50 Total: -34.52 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.39 Total: -16.13 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.71 Total: 16.44 kcal Atomic # 16 Polarization: -2.75 SS G_CDS: -2.08 Total: -4.83 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.62 -8.76 -43.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001453160757.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.252 kcal (2) G-P(sol) polarization free energy of solvation -34.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds