Wall clock time and date at job start Sat Apr 11 2020 00:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47267 * 2 1 4 4 N 1.46507 * 109.46966 * 119.99637 * 2 1 3 5 5 C 1.34770 * 120.00021 * 273.62262 * 4 2 1 6 6 O 1.21550 * 120.00475 * 359.97438 * 5 4 2 7 7 C 1.47872 * 120.00023 * 180.02562 * 5 4 2 8 8 C 1.39668 * 120.09763 * 359.97438 * 7 5 4 9 9 C 1.38037 * 120.03768 * 180.02562 * 8 7 5 10 10 C 1.38179 * 120.24495 * 359.67203 * 9 8 7 11 11 C 1.39182 * 120.19804 * 0.60490 * 10 9 8 12 12 S 1.76205 * 120.01853 * 179.69172 * 11 10 9 13 13 C 1.76197 * 100.00108 * 265.06589 * 12 11 10 14 14 H 1.08007 * 119.99966 * 5.07061 * 13 12 11 15 15 C 1.38728 * 119.99733 * 185.06253 * 13 12 11 16 16 N 1.31629 * 119.99576 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00128 * 0.02562 * 15 13 12 18 18 H 1.48508 * 109.47199 * 89.99678 * 17 15 13 19 19 H 1.48503 * 109.47129 * 209.99309 * 17 15 13 20 20 H 1.48490 * 109.47192 * 329.99708 * 17 15 13 21 21 C 1.38870 * 119.96031 * 359.42612 * 11 10 9 22 22 C 1.52994 * 109.47407 * 240.00009 * 2 1 3 23 23 C 1.52997 * 115.55331 * 150.45029 * 22 2 1 24 24 O 1.42910 * 109.46736 * 294.88368 * 23 22 2 25 25 C 1.53008 * 117.49777 * 4.73614 * 22 2 1 26 26 C 1.53001 * 117.49656 * 296.11565 * 22 2 1 27 27 H 1.09007 * 109.47132 * 300.00202 * 1 2 3 28 28 H 1.08998 * 109.46749 * 59.99736 * 1 2 3 29 29 H 1.08992 * 109.47136 * 180.02562 * 1 2 3 30 30 H 0.96997 * 119.99609 * 93.62096 * 4 2 1 31 31 H 1.08001 * 119.98284 * 0.02562 * 8 7 5 32 32 H 1.08003 * 119.87913 * 180.02562 * 9 8 7 33 33 H 1.08002 * 119.90203 * 180.32021 * 10 9 8 34 34 H 0.97005 * 119.99308 * 180.02562 * 16 15 13 35 35 H 1.08000 * 120.12604 * 180.25897 * 21 11 10 36 36 H 1.08999 * 109.47227 * 54.88282 * 23 22 2 37 37 H 1.09002 * 109.47259 * 174.88998 * 23 22 2 38 38 H 0.96695 * 114.00082 * 179.97438 * 24 23 22 39 39 H 1.08994 * 117.49639 * 0.02562 * 25 22 2 40 40 H 1.08997 * 117.49323 * 145.02277 * 25 22 2 41 41 H 1.08997 * 117.49962 * 214.97703 * 26 22 2 42 42 H 1.09000 * 117.50028 * 0.02562 * 26 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1734 -0.0117 2.3501 6 8 1.9086 1.1736 2.3983 7 6 2.6668 -0.7086 3.5574 8 6 2.9723 -2.0704 3.5044 9 6 3.4323 -2.7198 4.6322 10 6 3.5991 -2.0260 5.8155 11 6 3.2923 -0.6700 5.8812 12 16 3.4992 0.2083 7.3947 13 6 1.8632 0.0967 8.0392 14 1 1.1180 -0.4900 7.5225 15 6 1.5323 0.7624 9.2105 16 7 0.3102 0.6786 9.6923 17 14 2.8210 1.7775 10.1039 18 1 2.7918 3.1727 9.5959 19 1 2.5309 1.7750 11.5603 20 1 4.1647 1.1921 9.8658 21 6 2.8284 -0.0084 4.7518 22 6 2.0401 -0.7212 -1.2492 23 6 3.3922 -0.2426 -1.7817 24 8 3.2748 1.1078 -2.2344 25 6 1.0004 -1.1826 -2.2725 26 6 1.7123 -2.2091 -1.3891 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 2.2300 -1.6364 1.1578 31 1 2.8485 -2.6157 2.5804 32 1 3.6681 -3.7729 4.5882 33 1 3.9643 -2.5385 6.6932 34 1 0.0788 1.1444 10.5112 35 1 2.5935 1.0447 4.7986 36 1 4.1355 -0.2958 -0.9862 37 1 3.7016 -0.8783 -2.6113 38 1 4.0962 1.4776 -2.5858 39 1 -0.0469 -0.9720 -2.0560 40 1 1.2796 -1.1451 -3.3255 41 1 2.4598 -2.8469 -1.8609 42 1 1.1330 -2.6741 -0.5914 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001453160757.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:37 Heat of formation + Delta-G solvation = -64.772092 kcal Electronic energy + Delta-G solvation = -24006.626654 eV Core-core repulsion = 20463.361930 eV Total energy + Delta-G solvation = -3543.264724 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.51929 -40.06113 -38.97770 -37.01571 -35.31483 -34.73123 -32.67396 -31.98521 -30.67776 -28.29898 -27.93487 -25.64936 -24.15522 -23.52122 -23.26463 -21.59656 -20.50045 -19.86557 -18.83853 -18.28386 -17.45734 -17.23308 -17.14634 -16.70760 -16.40799 -16.19375 -15.71436 -15.64467 -15.11893 -14.97053 -14.74595 -14.69764 -14.06213 -13.84399 -13.68956 -13.60431 -13.34971 -13.13366 -13.08326 -12.70437 -12.58482 -12.30379 -12.20971 -12.09960 -11.86399 -11.35140 -11.30494 -11.23370 -11.04597 -10.92402 -10.68307 -10.29627 -9.93725 -9.76296 -9.15723 -8.55260 -6.29459 -0.22241 0.19501 1.05161 1.30419 1.42815 1.63888 1.76585 1.97592 2.20568 2.58480 2.73046 2.82990 2.95580 3.43023 3.56973 3.64283 3.70895 3.90457 3.96898 4.00903 4.17254 4.30428 4.38061 4.41529 4.43927 4.54555 4.60169 4.63029 4.77686 4.83851 4.88018 4.97346 5.01521 5.02466 5.18918 5.24289 5.27943 5.28723 5.41610 5.43368 5.67453 5.82009 6.08635 6.46439 6.87170 6.89322 7.13770 8.58490 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.021847 B = 0.002751 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.352759 B =10175.939154 C =10434.692013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.182 3.818 3 H 0.063 0.937 4 N -0.699 5.699 5 C 0.561 3.439 6 O -0.583 6.583 7 C -0.158 4.158 8 C -0.059 4.059 9 C -0.120 4.120 10 C -0.059 4.059 11 C -0.118 4.118 12 S -0.116 6.116 13 C -0.524 4.524 14 H 0.045 0.955 15 C 0.040 3.960 16 N -0.920 5.920 17 Si 0.922 3.078 18 H -0.263 1.263 19 H -0.256 1.256 20 H -0.225 1.225 21 C -0.045 4.045 22 C -0.156 4.156 23 C 0.112 3.888 24 O -0.593 6.593 25 C -0.159 4.159 26 C -0.147 4.147 27 H 0.031 0.969 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.414 0.586 31 H 0.175 0.825 32 H 0.180 0.820 33 H 0.141 0.859 34 H 0.278 0.722 35 H 0.103 0.897 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.395 0.605 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.121 0.879 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.903 -11.307 -26.419 29.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.078 3.922 3 H 0.081 0.919 4 N -0.351 5.351 5 C 0.349 3.651 6 O -0.464 6.464 7 C -0.163 4.163 8 C -0.077 4.077 9 C -0.139 4.139 10 C -0.079 4.079 11 C -0.229 4.229 12 S 0.118 5.882 13 C -0.671 4.671 14 H 0.063 0.937 15 C -0.165 4.165 16 N -0.557 5.557 17 Si 0.743 3.257 18 H -0.188 1.188 19 H -0.180 1.180 20 H -0.149 1.149 21 C -0.067 4.067 22 C -0.157 4.157 23 C 0.035 3.965 24 O -0.401 6.401 25 C -0.196 4.196 26 C -0.184 4.184 27 H 0.050 0.950 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.253 0.747 31 H 0.192 0.808 32 H 0.197 0.803 33 H 0.159 0.841 34 H 0.088 0.912 35 H 0.122 0.878 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.245 0.755 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.139 0.861 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.902 -9.981 -25.576 28.569 hybrid contribution -0.698 0.298 0.295 0.814 sum 7.204 -9.684 -25.281 28.014 Atomic orbital electron populations 1.22261 0.94790 1.03018 1.01811 1.20223 0.93894 0.95974 0.82149 0.91887 1.45818 1.66846 1.13853 1.08627 1.18441 0.76742 0.86009 0.83910 1.90760 1.52632 1.17605 1.85435 1.19966 1.07136 0.96137 0.93052 1.21747 0.94317 0.91266 1.00389 1.21581 0.99402 1.01939 0.90961 1.22101 0.94400 0.91629 0.99802 1.22066 1.05645 0.98239 0.96978 1.82602 1.15783 1.73381 1.16405 1.22373 0.95500 1.36365 1.12837 0.93662 1.25743 0.97593 0.96318 0.96832 1.70038 1.20101 1.43185 1.22424 0.85763 0.80946 0.79940 0.79047 1.18818 1.18035 1.14887 1.21636 0.93788 0.99494 0.91753 1.21554 0.97904 0.98848 0.97367 1.21660 0.94028 0.83114 0.97704 1.86465 1.40376 1.28832 1.84416 1.23248 0.97773 1.01989 0.96564 1.23208 1.03303 0.88994 1.02875 0.94980 0.90145 0.90228 0.74709 0.80812 0.80283 0.84079 0.91243 0.87837 0.93674 0.90940 0.75489 0.87703 0.87616 0.86115 0.87240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 8.07 71.98 0.58 -2.76 16 2 C 0.18 3.94 2.68 44.99 0.12 4.06 16 3 H 0.06 1.88 7.21 -2.38 -0.02 1.86 16 4 N -0.70 -15.24 4.99 -445.38 -2.22 -17.47 16 5 C 0.56 18.43 7.75 86.80 0.67 19.10 16 6 O -0.58 -25.15 15.98 -3.87 -0.06 -25.21 16 7 C -0.16 -5.19 5.87 -20.11 -0.12 -5.31 16 8 C -0.06 -1.31 9.54 22.57 0.22 -1.10 16 9 C -0.12 -2.75 10.02 22.21 0.22 -2.52 16 10 C -0.06 -1.95 9.79 22.48 0.22 -1.73 16 11 C -0.12 -5.09 5.45 22.65 0.12 -4.96 16 12 S -0.12 -5.85 19.38 -56.49 -1.09 -6.94 16 13 C -0.52 -31.92 10.01 67.94 0.68 -31.24 16 14 H 0.05 3.06 8.02 -2.91 -0.02 3.03 16 15 C 0.04 2.41 5.50 84.84 0.47 2.88 16 16 N -0.92 -57.85 13.97 21.64 0.30 -57.54 16 17 Si 0.92 44.66 27.74 68.60 1.90 46.56 16 18 H -0.26 -12.58 7.11 99.48 0.71 -11.88 16 19 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.23 -10.34 6.74 99.48 0.67 -9.66 16 21 C -0.04 -1.91 9.34 22.70 0.21 -1.69 16 22 C -0.16 -2.18 2.02 -52.18 -0.11 -2.28 16 23 C 0.11 1.49 6.85 71.98 0.49 1.98 16 24 O -0.59 -10.02 13.39 -148.98 -1.99 -12.01 16 25 C -0.16 -1.68 9.24 30.60 0.28 -1.40 16 26 C -0.15 -1.11 8.96 30.60 0.27 -0.84 16 27 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.08 1.47 7.17 -2.39 -0.02 1.46 16 29 H 0.08 1.27 7.16 -2.39 -0.02 1.25 16 30 H 0.41 5.74 5.89 -92.71 -0.55 5.19 16 31 H 0.17 1.94 6.40 -2.91 -0.02 1.92 16 32 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 33 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 34 H 0.28 16.04 8.31 -92.70 -0.77 15.27 16 35 H 0.10 5.03 7.65 -2.91 -0.02 5.01 16 36 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 38 H 0.40 3.22 9.12 -74.06 -0.68 2.55 16 39 H 0.10 1.14 5.82 -2.39 -0.01 1.13 16 40 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.11 0.69 7.68 -2.39 -0.02 0.67 16 Total: -1.00 -84.36 364.68 0.97 -83.39 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -0.20 Total: 17.04 kcal Atomic # 6 Polarization: -32.15 SS G_CDS: 4.34 Total: -27.81 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -1.92 Total: -75.01 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -2.06 Total: -37.22 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.90 Total: 46.56 kcal Atomic # 16 Polarization: -5.85 SS G_CDS: -1.09 Total: -6.94 kcal Total: -84.36 0.97 -83.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001453160757.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.613 kcal (2) G-P(sol) polarization free energy of solvation -84.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds