Wall clock time and date at job start Sat Apr 11 2020 00:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.45586 * 2 1 4 4 C 1.54810 * 109.45972 * 240.03383 * 2 1 3 5 5 O 1.38018 * 109.48345 * 172.09117 * 4 2 1 6 6 C 1.42155 * 119.43463 * 63.43208 * 5 4 2 7 7 C 1.51539 * 108.76184 * 272.77720 * 6 5 4 8 8 C 1.53954 * 109.72537 * 91.29710 * 7 6 5 9 9 N 1.45120 * 109.46447 * 119.97655 * 2 1 3 10 10 C 1.34780 * 118.75531 * 29.30725 * 9 2 1 11 11 O 1.21551 * 120.00015 * 352.41526 * 10 9 2 12 12 C 1.47856 * 120.00082 * 172.41295 * 10 9 2 13 13 C 1.39673 * 120.10282 * 323.96620 * 12 10 9 14 14 C 1.38043 * 120.04175 * 179.97438 * 13 12 10 15 15 C 1.38179 * 120.24040 * 0.02562 * 14 13 12 16 16 C 1.39182 * 120.20380 * 0.26997 * 15 14 13 17 17 S 1.76202 * 120.01861 * 179.74420 * 16 15 14 18 18 C 1.76199 * 100.00189 * 274.98048 * 17 16 15 19 19 H 1.07997 * 119.99884 * 4.99930 * 18 17 16 20 20 C 1.38719 * 120.00038 * 185.00448 * 18 17 16 21 21 N 1.31629 * 119.99931 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00155 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46933 * 90.00018 * 22 20 18 24 24 H 1.48502 * 109.47166 * 209.99811 * 22 20 18 25 25 H 1.48495 * 109.46915 * 330.00024 * 22 20 18 26 26 C 1.38876 * 119.95697 * 359.47255 * 16 15 14 27 27 H 1.09008 * 109.47141 * 286.26542 * 1 2 3 28 28 H 1.08998 * 109.47172 * 46.26351 * 1 2 3 29 29 H 1.09004 * 109.47414 * 166.26880 * 1 2 3 30 30 H 1.09001 * 109.46974 * 292.09424 * 4 2 1 31 31 H 1.08996 * 109.46812 * 52.08669 * 4 2 1 32 32 H 1.08996 * 109.59247 * 32.56382 * 6 5 4 33 33 H 1.08998 * 109.58730 * 152.85910 * 6 5 4 34 34 H 1.08995 * 109.45379 * 211.43010 * 7 6 5 35 35 H 1.09000 * 109.45585 * 331.37024 * 7 6 5 36 36 H 1.08996 * 109.36407 * 199.90668 * 8 7 6 37 37 H 1.09000 * 109.17514 * 80.57577 * 8 7 6 38 38 H 1.08006 * 119.98124 * 359.97438 * 13 12 10 39 39 H 1.07996 * 119.87977 * 180.02562 * 14 13 12 40 40 H 1.08000 * 119.89613 * 179.97438 * 15 14 13 41 41 H 0.97003 * 119.99709 * 180.02562 * 21 20 18 42 42 H 1.08004 * 120.11703 * 180.27426 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0457 -0.7291 -1.2645 5 8 3.4142 -0.5763 -1.3580 6 6 4.2491 -1.1255 -0.3470 7 6 4.3928 -0.1119 0.7703 8 6 3.2976 -0.3446 1.8270 9 7 2.0135 -0.6836 1.1852 10 6 1.2581 -1.6617 1.7232 11 8 0.1358 -1.8638 1.3024 12 6 1.7946 -2.4887 2.8252 13 6 3.1465 -2.8391 2.8440 14 6 3.6461 -3.6108 3.8737 15 6 2.8130 -4.0403 4.8890 16 6 1.4629 -3.7022 4.8771 17 16 0.4035 -4.2582 6.1707 18 6 -0.0147 -5.8565 5.5581 19 1 0.4512 -6.2285 4.6576 20 6 -0.9424 -6.6368 6.2324 21 7 -1.5099 -6.1835 7.3302 22 14 -1.3863 -8.3310 5.5826 23 1 -0.4749 -9.3427 6.1748 24 1 -2.7885 -8.6512 5.9524 25 1 -1.2486 -8.3458 4.1041 26 6 0.9525 -2.9217 3.8481 27 1 -0.3634 0.2879 0.9866 28 1 -0.3633 0.7105 -0.7425 29 1 -0.3634 -0.9983 -0.2439 30 1 1.8022 -1.7894 -1.1972 31 1 1.5713 -0.3029 -2.1485 32 1 3.7986 -2.0381 0.0432 33 1 5.2295 -1.3521 -0.7660 34 1 5.3734 -0.2192 1.2338 35 1 4.2923 0.8941 0.3629 36 1 3.1723 0.5595 2.4227 37 1 3.5985 -1.1638 2.4801 38 1 3.8014 -2.5060 2.0524 39 1 4.6920 -3.8799 3.8859 40 1 3.2097 -4.6442 5.6917 41 1 -2.1583 -6.7294 7.8019 42 1 -0.0938 -2.6541 3.8386 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001458142421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:44 Heat of formation + Delta-G solvation = -40.489771 kcal Electronic energy + Delta-G solvation = -25146.103594 eV Core-core repulsion = 21603.891831 eV Total energy + Delta-G solvation = -3542.211763 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.21495 -40.00422 -39.15897 -36.67308 -34.87903 -34.66827 -32.59644 -32.01577 -30.80382 -28.13383 -27.76425 -26.25293 -25.24674 -24.08009 -22.86221 -22.32690 -20.67404 -19.73853 -18.42387 -17.85906 -17.70428 -17.61039 -17.13622 -16.94570 -16.46964 -16.21355 -15.75634 -15.63239 -15.04286 -14.85197 -14.61086 -14.58793 -14.10178 -13.78808 -13.62145 -13.35816 -13.30319 -13.28067 -13.12532 -12.97788 -12.65652 -12.49473 -12.42369 -12.31952 -11.89402 -11.76759 -11.51900 -11.24976 -10.78816 -10.63637 -10.31987 -10.01677 -9.74921 -9.51659 -8.82108 -8.40897 -6.21123 -0.17151 0.20185 1.27615 1.36226 1.43560 1.54125 1.73315 1.84036 2.22055 2.65903 2.79622 2.92298 3.31691 3.39555 3.68193 3.79510 3.89502 3.90806 4.01938 4.05886 4.13225 4.23983 4.32730 4.41702 4.47119 4.60804 4.63671 4.65868 4.74529 4.77454 4.84681 4.87748 4.98042 5.07617 5.14596 5.16377 5.26851 5.33642 5.36886 5.47251 5.65536 5.81605 6.14141 6.18045 6.58016 6.99740 7.04108 8.66159 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.019927 B = 0.003343 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.778226 B = 8372.803401 C = 8829.195769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.106 3.894 3 H 0.106 0.894 4 C 0.072 3.928 5 O -0.396 6.396 6 C 0.061 3.939 7 C -0.154 4.154 8 C 0.061 3.939 9 N -0.598 5.598 10 C 0.556 3.444 11 O -0.561 6.561 12 C -0.152 4.152 13 C -0.080 4.080 14 C -0.115 4.115 15 C -0.066 4.066 16 C -0.124 4.124 17 S -0.093 6.093 18 C -0.537 4.537 19 H 0.067 0.933 20 C 0.022 3.978 21 N -0.906 5.906 22 Si 0.991 3.009 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.270 1.270 26 C -0.047 4.047 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.024 0.976 31 H 0.123 0.877 32 H 0.042 0.958 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.119 0.881 38 H 0.175 0.825 39 H 0.178 0.822 40 H 0.134 0.866 41 H 0.274 0.726 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.629 12.828 -15.563 26.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.003 3.997 3 H 0.124 0.876 4 C -0.007 4.007 5 O -0.314 6.314 6 C -0.015 4.015 7 C -0.192 4.192 8 C -0.059 4.059 9 N -0.330 5.330 10 C 0.345 3.655 11 O -0.441 6.441 12 C -0.157 4.157 13 C -0.098 4.098 14 C -0.135 4.135 15 C -0.087 4.087 16 C -0.235 4.235 17 S 0.141 5.859 18 C -0.685 4.685 19 H 0.085 0.915 20 C -0.184 4.184 21 N -0.542 5.542 22 Si 0.813 3.187 23 H -0.185 1.185 24 H -0.197 1.197 25 H -0.195 1.195 26 C -0.069 4.069 27 H 0.054 0.946 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.141 0.859 32 H 0.060 0.940 33 H 0.134 0.866 34 H 0.140 0.860 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.136 0.864 38 H 0.191 0.809 39 H 0.195 0.805 40 H 0.152 0.848 41 H 0.083 0.917 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 15.639 13.340 -14.767 25.311 hybrid contribution -0.951 -1.623 -0.570 1.966 sum 14.689 11.717 -15.337 24.254 Atomic orbital electron populations 1.22139 0.93703 1.03022 1.01178 1.22191 0.95489 0.97439 0.84597 0.87643 1.22575 0.81771 0.98392 0.97968 1.86268 1.16804 1.78670 1.49686 1.22524 0.95047 0.95125 0.88789 1.22510 0.99596 1.01279 0.95853 1.23153 0.81888 1.04119 0.96741 1.47948 1.21609 1.34990 1.28478 1.18644 0.84604 0.80261 0.81975 1.90779 1.20251 1.70318 1.62734 1.20014 0.95763 1.03478 0.96484 1.21777 0.92534 0.96079 0.99432 1.21559 1.01634 0.97252 0.93014 1.22067 0.91683 0.96200 0.98772 1.22494 0.98566 1.01893 1.00522 1.83470 1.57964 1.19558 1.24888 1.23063 1.29650 1.01344 1.14402 0.91510 1.25978 0.94329 1.03199 0.94875 1.70107 1.27550 1.39165 1.17384 0.85063 0.78105 0.77022 0.78543 1.18540 1.19701 1.19478 1.21523 0.98567 0.94678 0.92150 0.94565 0.90923 0.91558 0.95757 0.85934 0.93969 0.86609 0.86028 0.89964 0.90662 0.86368 0.80858 0.80517 0.84844 0.91674 0.88001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 7.73 71.98 0.56 -2.94 16 2 C 0.11 2.16 2.77 45.87 0.13 2.29 16 3 H 0.11 1.76 8.11 -2.39 -0.02 1.74 16 4 C 0.07 1.34 6.08 72.60 0.44 1.79 16 5 O -0.40 -6.93 9.86 -117.90 -1.16 -8.09 16 6 C 0.06 0.77 6.33 71.50 0.45 1.23 16 7 C -0.15 -1.46 5.75 30.44 0.17 -1.28 16 8 C 0.06 0.92 5.47 86.51 0.47 1.40 16 9 N -0.60 -13.53 2.15 -796.56 -1.71 -15.24 16 10 C 0.56 17.66 7.04 86.79 0.61 18.27 16 11 O -0.56 -22.01 12.74 -3.88 -0.05 -22.06 16 12 C -0.15 -4.96 5.37 -20.11 -0.11 -5.07 16 13 C -0.08 -1.88 7.39 22.57 0.17 -1.71 16 14 C -0.12 -2.73 10.02 22.21 0.22 -2.51 16 15 C -0.07 -2.28 9.79 22.48 0.22 -2.06 16 16 C -0.12 -5.40 5.45 22.65 0.12 -5.27 16 17 S -0.09 -5.08 21.41 -56.49 -1.21 -6.29 16 18 C -0.54 -31.61 9.46 67.93 0.64 -30.97 16 19 H 0.07 3.90 7.79 -2.91 -0.02 3.87 16 20 C 0.02 1.24 5.49 84.84 0.47 1.70 16 21 N -0.91 -54.64 13.22 21.63 0.29 -54.35 16 22 Si 0.99 44.77 29.55 68.60 2.03 46.80 16 23 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 C -0.05 -1.98 9.36 22.70 0.21 -1.77 16 27 H 0.04 1.04 7.55 -2.38 -0.02 1.03 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 2.00 6.05 -2.38 -0.01 1.98 16 30 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.04 0.64 6.27 -2.39 -0.01 0.63 16 33 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.12 0.44 8.14 -2.39 -0.02 0.43 16 35 H 0.08 0.82 8.01 -2.39 -0.02 0.80 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.12 1.76 3.04 -5.46 -0.02 1.74 16 38 H 0.17 2.60 4.76 -2.91 -0.01 2.59 16 39 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 40 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 41 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 42 H 0.10 4.78 8.01 -2.91 -0.02 4.76 16 Total: -1.00 -76.30 346.62 3.98 -72.32 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 1.02 Total: 13.83 kcal Atomic # 6 Polarization: -31.69 SS G_CDS: 4.78 Total: -26.91 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -1.43 Total: -69.59 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -1.21 Total: -30.15 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: -5.08 SS G_CDS: -1.21 Total: -6.29 kcal Total: -76.30 3.98 -72.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001458142421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.828 kcal (2) G-P(sol) polarization free energy of solvation -76.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds