Wall clock time and date at job start Sat Apr 11 2020 00:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.97335 * 2 1 4 4 C 1.46917 * 109.99257 * 121.28906 * 2 1 3 5 5 O 1.42379 * 113.68399 * 176.28572 * 4 2 1 6 6 C 1.39810 * 108.54050 * 267.27381 * 5 4 2 7 7 C 1.55188 * 110.45621 * 101.32129 * 6 5 4 8 8 C 1.55336 * 108.87290 * 322.13991 * 7 6 5 9 9 N 1.43417 * 116.24147 * 319.46443 * 8 7 6 10 10 C 1.34775 * 120.63591 * 269.33226 * 9 8 7 11 11 O 1.21559 * 119.99615 * 174.02201 * 10 9 8 12 12 C 1.47859 * 120.00251 * 354.01914 * 10 9 8 13 13 C 1.39667 * 120.09975 * 24.92428 * 12 10 9 14 14 C 1.38042 * 120.03909 * 179.97438 * 13 12 10 15 15 C 1.38171 * 120.24309 * 0.04277 * 14 13 12 16 16 C 1.39181 * 120.20253 * 359.95411 * 15 14 13 17 17 S 1.76203 * 120.01890 * 180.02562 * 16 15 14 18 18 C 1.76207 * 99.99922 * 276.68456 * 17 16 15 19 19 H 1.08001 * 119.99792 * 5.55689 * 18 17 16 20 20 C 1.38731 * 119.99820 * 185.55118 * 18 17 16 21 21 N 1.31624 * 119.99829 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99548 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47678 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47031 * 120.00449 * 22 20 18 25 25 H 1.48496 * 109.46965 * 239.99697 * 22 20 18 26 26 C 1.38869 * 119.95920 * 359.75217 * 16 15 14 27 27 H 1.09001 * 109.47555 * 307.75024 * 1 2 3 28 28 H 1.09007 * 109.47612 * 67.75156 * 1 2 3 29 29 H 1.09006 * 109.47114 * 187.75164 * 1 2 3 30 30 H 1.08995 * 108.61762 * 297.33017 * 4 2 1 31 31 H 1.08996 * 108.61588 * 55.24615 * 4 2 1 32 32 H 1.08990 * 109.30935 * 341.07373 * 6 5 4 33 33 H 1.09002 * 109.27748 * 221.54402 * 6 5 4 34 34 H 1.09004 * 109.56980 * 202.32821 * 7 6 5 35 35 H 1.09000 * 109.57221 * 81.95612 * 7 6 5 36 36 H 1.09004 * 108.12123 * 197.70289 * 8 7 6 37 37 H 1.09002 * 108.12351 * 81.22471 * 8 7 6 38 38 H 1.08007 * 119.98288 * 0.02562 * 13 12 10 39 39 H 1.08006 * 119.87795 * 180.02562 * 14 13 12 40 40 H 1.08004 * 119.89707 * 179.97438 * 15 14 13 41 41 H 0.97005 * 119.99583 * 179.97438 * 21 20 18 42 42 H 1.08002 * 120.12572 * 180.27833 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9023 1.0245 0.0000 4 6 2.0322 -0.7170 1.1798 5 8 3.4505 -0.8373 1.2151 6 6 3.8087 -2.0505 0.6196 7 6 4.3095 -1.8158 -0.8304 8 6 3.4514 -0.6979 -1.4837 9 7 2.0451 -0.7331 -1.2045 10 6 1.2021 -1.4111 -2.0083 11 8 0.0309 -1.5248 -1.7032 12 6 1.7017 -2.0165 -3.2613 13 6 3.0508 -2.3560 -3.3859 14 6 3.5158 -2.9217 -4.5561 15 6 2.6511 -3.1536 -5.6085 16 6 1.3048 -2.8193 -5.4953 17 16 0.2063 -3.1179 -6.8402 18 6 0.5060 -1.6750 -7.8062 19 1 1.2811 -0.9816 -7.5150 20 6 -0.2537 -1.4298 -8.9408 21 7 -1.1986 -2.2747 -9.2954 22 14 0.0645 0.0995 -9.9652 23 1 1.1722 0.8804 -9.3582 24 1 0.4390 -0.2987 -11.3460 25 1 -1.1643 0.9322 -10.0064 26 6 0.8268 -2.2555 -4.3197 27 1 -0.3634 0.6291 0.8125 28 1 -0.3634 0.3891 -0.9512 29 1 -0.3634 -1.0183 0.1386 30 1 1.7056 -0.1869 2.0744 31 1 1.5978 -1.7167 1.1905 32 1 2.9422 -2.7112 0.5982 33 1 4.6025 -2.5172 1.2029 34 1 4.2083 -2.7365 -1.4051 35 1 5.3551 -1.5088 -0.8104 36 1 3.5843 -0.7560 -2.5640 37 1 3.8391 0.2651 -1.1513 38 1 3.7304 -2.1767 -2.5659 39 1 4.5595 -3.1836 -4.6494 40 1 3.0211 -3.5961 -6.5217 41 1 -1.7300 -2.1030 -10.0886 42 1 -0.2183 -1.9991 -4.2273 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001458142458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:48 Heat of formation + Delta-G solvation = 1.985703 kcal Electronic energy + Delta-G solvation = -25176.842817 eV Core-core repulsion = 21636.472928 eV Total energy + Delta-G solvation = -3540.369889 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.26387 -39.08969 -37.92955 -35.78339 -34.43374 -32.52476 -31.17145 -30.40906 -30.04769 -27.23997 -25.77674 -25.58207 -23.93900 -22.61347 -21.93836 -21.56928 -19.39712 -17.88377 -17.34637 -16.93570 -16.83461 -16.75605 -15.76094 -15.34110 -14.90366 -14.87041 -14.73215 -14.13529 -14.03826 -13.73953 -13.42679 -13.24699 -12.78199 -12.60520 -12.55720 -12.27295 -12.12409 -12.09232 -11.72300 -11.22083 -11.15938 -11.13769 -11.09613 -10.98583 -10.97578 -10.57943 -9.98861 -9.89305 -9.25601 -9.16852 -8.96450 -8.78520 -8.55045 -7.98528 -6.71771 -6.30296 -4.04273 1.20594 1.66205 2.72569 2.95472 3.16936 3.19584 3.26740 3.45717 3.61230 4.04199 4.22467 4.40991 4.49722 4.59534 4.70384 4.80486 4.92974 4.96400 5.05213 5.06093 5.16884 5.22976 5.29062 5.32033 5.44458 5.46536 5.50405 5.54739 5.62871 5.70450 5.75241 5.88352 5.94918 6.00752 6.20980 6.26239 6.49177 6.58431 6.65783 6.78999 6.93573 7.20636 7.40079 7.55643 8.21225 8.30897 9.15410 10.76466 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.020076 B = 0.003348 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.354225 B = 8362.356758 C = 8812.245566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.120 3.880 3 H 0.086 0.914 4 C 0.036 3.964 5 O -0.354 6.354 6 C 0.054 3.946 7 C -0.181 4.181 8 C 0.083 3.917 9 N -0.606 5.606 10 C 0.567 3.433 11 O -0.528 6.528 12 C -0.154 4.154 13 C -0.140 4.140 14 C -0.143 4.143 15 C -0.057 4.057 16 C -0.106 4.106 17 S -0.036 6.036 18 C -0.520 4.520 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.869 5.869 22 Si 0.921 3.079 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.279 1.279 26 C -0.021 4.021 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.165 0.835 39 H 0.122 0.878 40 H 0.129 0.871 41 H 0.269 0.731 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.406 2.197 19.283 22.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.019 3.981 3 H 0.104 0.896 4 C -0.041 4.041 5 O -0.272 6.272 6 C -0.024 4.024 7 C -0.220 4.220 8 C -0.041 4.041 9 N -0.340 5.340 10 C 0.357 3.643 11 O -0.405 6.405 12 C -0.159 4.159 13 C -0.158 4.158 14 C -0.163 4.163 15 C -0.079 4.079 16 C -0.217 4.217 17 S 0.199 5.801 18 C -0.667 4.667 19 H 0.094 0.906 20 C -0.136 4.136 21 N -0.505 5.505 22 Si 0.747 3.253 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.204 1.204 26 C -0.043 4.043 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.119 0.881 37 H 0.094 0.906 38 H 0.181 0.819 39 H 0.140 0.860 40 H 0.147 0.853 41 H 0.079 0.921 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.989 1.362 19.146 21.638 hybrid contribution 1.048 1.788 -0.653 2.173 sum 11.037 3.150 18.493 21.765 Atomic orbital electron populations 1.22102 0.91314 1.04006 1.02302 1.21371 0.96712 0.96114 0.83909 0.89556 1.22073 0.81895 1.01757 0.98411 1.87727 1.21144 1.39457 1.78844 1.22639 1.00472 0.86461 0.92830 1.23712 1.00750 1.00385 0.97155 1.21734 0.80800 0.99308 1.02284 1.47950 1.06930 1.51692 1.27424 1.18541 0.85369 0.77304 0.83036 1.90783 1.17110 1.59110 1.73513 1.19864 0.94860 1.06253 0.94920 1.22859 0.95301 0.97785 0.99851 1.21121 0.99627 1.01548 0.94018 1.21994 0.92788 0.95037 0.98033 1.22816 0.98295 1.00409 1.00152 1.83635 1.50741 1.31228 1.14522 1.22876 1.22992 1.08585 1.12263 0.90623 1.25004 0.94236 0.97518 0.96832 1.70002 1.19895 1.35519 1.25060 0.86072 0.78439 0.81385 0.79433 1.19531 1.20456 1.20433 1.21846 0.99522 0.92187 0.90759 0.93107 0.90889 0.89907 0.89160 0.91880 0.92372 0.90286 0.89258 0.89421 0.88071 0.90646 0.81864 0.85992 0.85257 0.92102 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 7.65 37.15 0.28 -1.32 16 2 C 0.12 1.27 3.40 -68.82 -0.23 1.03 16 3 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.04 0.33 5.28 34.24 0.18 0.51 16 5 O -0.35 -3.44 10.24 -32.42 -0.33 -3.77 16 6 C 0.05 0.45 6.38 38.32 0.24 0.70 16 7 C -0.18 -1.45 6.02 -24.33 -0.15 -1.59 16 8 C 0.08 0.84 4.45 -4.43 -0.02 0.82 16 9 N -0.61 -7.48 2.58 -168.54 -0.44 -7.92 16 10 C 0.57 9.01 7.37 -12.32 -0.09 8.92 16 11 O -0.53 -9.59 12.41 5.31 0.07 -9.53 16 12 C -0.15 -2.60 5.63 -105.00 -0.59 -3.20 16 13 C -0.14 -1.95 7.43 -39.12 -0.29 -2.24 16 14 C -0.14 -2.08 10.02 -39.68 -0.40 -2.48 16 15 C -0.06 -1.05 9.79 -39.26 -0.38 -1.43 16 16 C -0.11 -2.28 5.45 -39.00 -0.21 -2.49 16 17 S -0.04 -0.93 21.41 -107.50 -2.30 -3.23 16 18 C -0.52 -14.61 9.46 30.91 0.29 -14.32 16 19 H 0.08 2.10 7.79 -52.49 -0.41 1.70 16 20 C 0.07 2.04 5.49 -17.46 -0.10 1.95 16 21 N -0.87 -25.38 13.22 55.49 0.73 -24.65 16 22 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 26 C -0.02 -0.43 9.34 -38.92 -0.36 -0.80 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 1.01 7.10 -51.93 -0.37 0.64 16 29 H 0.08 1.09 6.49 -51.93 -0.34 0.75 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.61 6.66 -51.93 -0.35 0.26 16 32 H 0.06 0.53 6.66 -51.93 -0.35 0.18 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.71 6.03 -51.93 -0.31 0.40 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 1.10 4.57 -51.93 -0.24 0.86 16 37 H 0.08 0.70 7.98 -51.93 -0.41 0.29 16 38 H 0.16 1.73 1.48 -52.48 -0.08 1.66 16 39 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 40 H 0.13 2.28 8.06 -52.48 -0.42 1.86 16 41 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.14 2.90 7.84 -52.49 -0.41 2.49 16 LS Contribution 341.65 15.07 5.15 5.15 Total: -1.00 -32.01 341.65 -9.32 -41.34 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -5.35 Total: 2.28 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -1.83 Total: -15.94 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.30 Total: -32.57 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.27 Total: -13.30 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -2.30 Total: -3.23 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.01 -9.32 -41.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001458142458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.324 kcal (2) G-P(sol) polarization free energy of solvation -32.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds