Wall clock time and date at job start Sat Apr 11 2020 00:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.97335 * 2 1 4 4 C 1.46917 * 109.99257 * 121.28906 * 2 1 3 5 5 O 1.42379 * 113.68399 * 176.28572 * 4 2 1 6 6 C 1.39810 * 108.54050 * 267.27381 * 5 4 2 7 7 C 1.55188 * 110.45621 * 101.32129 * 6 5 4 8 8 C 1.55336 * 108.87290 * 322.13991 * 7 6 5 9 9 N 1.43417 * 116.24147 * 319.46443 * 8 7 6 10 10 C 1.34775 * 120.63591 * 269.33226 * 9 8 7 11 11 O 1.21559 * 119.99615 * 174.02201 * 10 9 8 12 12 C 1.47859 * 120.00251 * 354.01914 * 10 9 8 13 13 C 1.39667 * 120.09975 * 24.92428 * 12 10 9 14 14 C 1.38042 * 120.03909 * 179.97438 * 13 12 10 15 15 C 1.38171 * 120.24309 * 0.04277 * 14 13 12 16 16 C 1.39181 * 120.20253 * 359.95411 * 15 14 13 17 17 S 1.76203 * 120.01890 * 180.02562 * 16 15 14 18 18 C 1.76207 * 99.99922 * 276.68456 * 17 16 15 19 19 H 1.08001 * 119.99792 * 5.55689 * 18 17 16 20 20 C 1.38731 * 119.99820 * 185.55118 * 18 17 16 21 21 N 1.31624 * 119.99829 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99548 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47678 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47031 * 120.00449 * 22 20 18 25 25 H 1.48496 * 109.46965 * 239.99697 * 22 20 18 26 26 C 1.38869 * 119.95920 * 359.75217 * 16 15 14 27 27 H 1.09001 * 109.47555 * 307.75024 * 1 2 3 28 28 H 1.09007 * 109.47612 * 67.75156 * 1 2 3 29 29 H 1.09006 * 109.47114 * 187.75164 * 1 2 3 30 30 H 1.08995 * 108.61762 * 297.33017 * 4 2 1 31 31 H 1.08996 * 108.61588 * 55.24615 * 4 2 1 32 32 H 1.08990 * 109.30935 * 341.07373 * 6 5 4 33 33 H 1.09002 * 109.27748 * 221.54402 * 6 5 4 34 34 H 1.09004 * 109.56980 * 202.32821 * 7 6 5 35 35 H 1.09000 * 109.57221 * 81.95612 * 7 6 5 36 36 H 1.09004 * 108.12123 * 197.70289 * 8 7 6 37 37 H 1.09002 * 108.12351 * 81.22471 * 8 7 6 38 38 H 1.08007 * 119.98288 * 0.02562 * 13 12 10 39 39 H 1.08006 * 119.87795 * 180.02562 * 14 13 12 40 40 H 1.08004 * 119.89707 * 179.97438 * 15 14 13 41 41 H 0.97005 * 119.99583 * 179.97438 * 21 20 18 42 42 H 1.08002 * 120.12572 * 180.27833 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9023 1.0245 0.0000 4 6 2.0322 -0.7170 1.1798 5 8 3.4505 -0.8373 1.2151 6 6 3.8087 -2.0505 0.6196 7 6 4.3095 -1.8158 -0.8304 8 6 3.4514 -0.6979 -1.4837 9 7 2.0451 -0.7331 -1.2045 10 6 1.2021 -1.4111 -2.0083 11 8 0.0309 -1.5248 -1.7032 12 6 1.7017 -2.0165 -3.2613 13 6 3.0508 -2.3560 -3.3859 14 6 3.5158 -2.9217 -4.5561 15 6 2.6511 -3.1536 -5.6085 16 6 1.3048 -2.8193 -5.4953 17 16 0.2063 -3.1179 -6.8402 18 6 0.5060 -1.6750 -7.8062 19 1 1.2811 -0.9816 -7.5150 20 6 -0.2537 -1.4298 -8.9408 21 7 -1.1986 -2.2747 -9.2954 22 14 0.0645 0.0995 -9.9652 23 1 1.1722 0.8804 -9.3582 24 1 0.4390 -0.2987 -11.3460 25 1 -1.1643 0.9322 -10.0064 26 6 0.8268 -2.2555 -4.3197 27 1 -0.3634 0.6291 0.8125 28 1 -0.3634 0.3891 -0.9512 29 1 -0.3634 -1.0183 0.1386 30 1 1.7056 -0.1869 2.0744 31 1 1.5978 -1.7167 1.1905 32 1 2.9422 -2.7112 0.5982 33 1 4.6025 -2.5172 1.2029 34 1 4.2083 -2.7365 -1.4051 35 1 5.3551 -1.5088 -0.8104 36 1 3.5843 -0.7560 -2.5640 37 1 3.8391 0.2651 -1.1513 38 1 3.7304 -2.1767 -2.5659 39 1 4.5595 -3.1836 -4.6494 40 1 3.0211 -3.5961 -6.5217 41 1 -1.7300 -2.1030 -10.0886 42 1 -0.2183 -1.9991 -4.2273 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001458142458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:47 Heat of formation + Delta-G solvation = -17.729774 kcal Electronic energy + Delta-G solvation = -25177.697744 eV Core-core repulsion = 21636.472928 eV Total energy + Delta-G solvation = -3541.224816 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.27943 -40.10070 -39.17274 -36.78833 -35.31922 -34.66654 -32.34647 -31.73028 -31.09763 -28.07335 -27.76412 -26.58049 -25.12694 -23.92361 -22.88688 -22.51502 -20.64626 -19.71813 -18.42061 -17.97213 -17.86161 -17.66449 -16.95064 -16.85804 -16.52345 -15.98245 -15.83559 -15.40084 -15.26269 -14.97591 -14.73477 -14.41163 -14.02823 -13.89585 -13.53572 -13.36763 -13.21759 -13.14251 -13.00094 -12.98715 -12.75995 -12.56256 -12.42206 -12.03232 -11.92184 -11.68025 -11.52653 -11.26294 -10.83607 -10.65599 -10.36930 -10.00206 -9.70749 -9.62757 -8.81930 -8.40407 -6.21226 -0.16068 0.22732 1.28836 1.35787 1.46040 1.60476 1.67508 1.81726 2.22774 2.71927 2.92544 2.92849 3.40404 3.40965 3.65801 3.84381 3.92509 3.98500 4.01138 4.04376 4.11394 4.23105 4.34671 4.35686 4.46021 4.53347 4.58459 4.66211 4.72269 4.74903 4.87257 4.89698 4.93249 5.00995 5.04643 5.19025 5.28052 5.32541 5.37035 5.48411 5.54368 5.85464 6.10770 6.14706 6.32961 6.99689 7.03093 8.67010 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.020076 B = 0.003348 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.354225 B = 8362.356758 C = 8812.245566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.119 3.881 3 H 0.105 0.895 4 C 0.040 3.960 5 O -0.359 6.359 6 C 0.048 3.952 7 C -0.176 4.176 8 C 0.071 3.929 9 N -0.598 5.598 10 C 0.561 3.439 11 O -0.562 6.562 12 C -0.157 4.157 13 C -0.115 4.115 14 C -0.123 4.123 15 C -0.067 4.067 16 C -0.127 4.127 17 S -0.099 6.099 18 C -0.535 4.535 19 H 0.069 0.931 20 C 0.019 3.981 21 N -0.907 5.907 22 Si 0.994 3.006 23 H -0.264 1.264 24 H -0.266 1.266 25 H -0.272 1.272 26 C -0.046 4.046 27 H 0.080 0.920 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.113 0.887 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.207 0.793 39 H 0.175 0.825 40 H 0.131 0.869 41 H 0.274 0.726 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.295 3.576 21.265 26.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.018 3.982 3 H 0.123 0.877 4 C -0.037 4.037 5 O -0.277 6.277 6 C -0.030 4.030 7 C -0.214 4.214 8 C -0.052 4.052 9 N -0.330 5.330 10 C 0.351 3.649 11 O -0.443 6.443 12 C -0.162 4.162 13 C -0.132 4.132 14 C -0.143 4.143 15 C -0.088 4.088 16 C -0.238 4.238 17 S 0.136 5.864 18 C -0.682 4.682 19 H 0.087 0.913 20 C -0.186 4.186 21 N -0.543 5.543 22 Si 0.816 3.184 23 H -0.188 1.188 24 H -0.191 1.191 25 H -0.198 1.198 26 C -0.068 4.068 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.131 0.869 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.135 0.865 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.223 0.777 39 H 0.192 0.808 40 H 0.149 0.851 41 H 0.083 0.917 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 13.915 2.742 21.155 25.469 hybrid contribution -0.078 1.368 -1.067 1.736 sum 13.838 4.110 20.088 24.736 Atomic orbital electron populations 1.21954 0.92414 1.03069 1.01656 1.21576 0.95910 0.97053 0.83655 0.87731 1.22013 0.81915 1.01408 0.98372 1.87725 1.20977 1.39999 1.78965 1.22770 1.00783 0.85998 0.93422 1.23712 1.01696 0.99466 0.96574 1.21998 0.79556 1.01462 1.02228 1.48029 1.07669 1.50243 1.27060 1.18492 0.85344 0.77854 0.83231 1.90782 1.18637 1.60584 1.74268 1.20037 0.95784 1.05958 0.94430 1.23441 0.94190 0.94809 1.00783 1.21616 1.01298 0.99113 0.92230 1.22080 0.91697 0.95385 0.99674 1.22469 0.98947 1.03877 0.98540 1.83556 1.53766 1.31680 1.17391 1.23097 1.23053 1.09135 1.12920 0.91294 1.26032 0.93752 1.00877 0.97937 1.70127 1.20892 1.37502 1.25794 0.84969 0.78539 0.77059 0.77834 1.18835 1.19093 1.19761 1.21556 0.98893 0.94240 0.92089 0.90165 0.93987 0.92034 0.86868 0.92718 0.93481 0.88182 0.88832 0.86510 0.88694 0.89005 0.77749 0.80799 0.85135 0.91702 0.87858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 7.65 71.98 0.55 -2.48 16 2 C 0.12 2.26 3.40 42.39 0.14 2.40 16 3 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 4 C 0.04 0.62 5.28 70.09 0.37 0.99 16 5 O -0.36 -5.58 10.24 -138.92 -1.42 -7.00 16 6 C 0.05 0.61 6.38 72.73 0.46 1.08 16 7 C -0.18 -1.93 6.02 32.15 0.19 -1.74 16 8 C 0.07 1.16 4.45 87.75 0.39 1.55 16 9 N -0.60 -13.68 2.58 -805.41 -2.08 -15.76 16 10 C 0.56 17.93 7.37 86.79 0.64 18.57 16 11 O -0.56 -21.57 12.41 -3.90 -0.05 -21.62 16 12 C -0.16 -5.30 5.63 -20.11 -0.11 -5.42 16 13 C -0.12 -2.87 7.43 22.57 0.17 -2.70 16 14 C -0.12 -3.15 10.02 22.21 0.22 -2.93 16 15 C -0.07 -2.43 9.79 22.48 0.22 -2.21 16 16 C -0.13 -5.74 5.45 22.65 0.12 -5.61 16 17 S -0.10 -5.47 21.41 -56.49 -1.21 -6.68 16 18 C -0.53 -31.41 9.46 67.94 0.64 -30.77 16 19 H 0.07 3.99 7.79 -2.91 -0.02 3.96 16 20 C 0.02 1.10 5.49 84.84 0.47 1.57 16 21 N -0.91 -54.88 13.22 21.64 0.29 -54.60 16 22 Si 0.99 44.38 29.55 68.60 2.03 46.41 16 23 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 C -0.05 -1.98 9.34 22.70 0.21 -1.76 16 27 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.04 1.21 7.10 -2.38 -0.02 1.19 16 29 H 0.06 1.66 6.49 -2.38 -0.02 1.65 16 30 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 0.96 6.66 -2.39 -0.02 0.94 16 32 H 0.05 0.72 6.66 -2.39 -0.02 0.71 16 33 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 0.97 6.03 -2.38 -0.01 0.96 16 35 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.10 1.68 4.57 -2.39 -0.01 1.67 16 37 H 0.09 1.29 7.98 -2.39 -0.02 1.27 16 38 H 0.21 3.38 1.48 -2.91 0.00 3.38 16 39 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 40 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 41 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 42 H 0.10 4.96 7.84 -2.91 -0.02 4.94 16 Total: -1.00 -76.05 341.65 3.30 -72.75 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 1.05 Total: 15.96 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 4.69 Total: -29.46 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -1.79 Total: -70.36 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -1.47 Total: -28.62 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: -5.47 SS G_CDS: -1.21 Total: -6.68 kcal Total: -76.05 3.30 -72.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001458142458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.021 kcal (2) G-P(sol) polarization free energy of solvation -76.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds