Wall clock time and date at job start Sat Apr 11 2020 00:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 115.54765 * 2 1 4 4 C 1.53001 * 117.50118 * 214.33432 * 2 1 3 5 5 C 1.52998 * 117.50020 * 145.70797 * 2 1 3 6 6 H 1.08997 * 117.50240 * 0.02562 * 5 2 1 7 7 C 1.53001 * 117.49788 * 214.98182 * 5 2 1 8 8 H 1.09006 * 115.55049 * 274.27602 * 7 5 2 9 9 C 1.52995 * 117.50049 * 128.60691 * 7 5 2 10 10 C 1.52990 * 60.00195 * 252.51141 * 9 7 5 11 11 H 1.09001 * 117.50185 * 107.48991 * 10 9 7 12 12 N 1.46502 * 117.49626 * 252.51106 * 10 9 7 13 13 S 1.65606 * 119.99786 * 213.61875 * 12 10 9 14 14 O 1.42104 * 106.40098 * 178.54007 * 13 12 10 15 15 O 1.42098 * 106.40245 * 311.45893 * 13 12 10 16 16 C 1.76199 * 107.21781 * 65.00325 * 13 12 10 17 17 C 1.38636 * 119.74831 * 269.72664 * 16 13 12 18 18 C 1.37621 * 120.24941 * 179.72025 * 17 16 13 19 19 C 1.40720 * 119.73930 * 0.57062 * 18 17 16 20 20 C 1.41395 * 120.23873 * 179.68197 * 19 18 17 21 21 H 1.08005 * 120.00260 * 24.41453 * 20 19 18 22 22 C 1.39943 * 119.99872 * 204.40620 * 20 19 18 23 23 N 1.30818 * 119.99866 * 17.86307 * 22 20 19 24 24 Si 1.86803 * 120.00315 * 197.85336 * 22 20 19 25 25 H 1.48506 * 109.46800 * 60.00598 * 24 22 20 26 26 H 1.48497 * 109.47089 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47138 * 300.00890 * 24 22 20 28 28 C 1.40710 * 119.51517 * 359.70044 * 19 18 17 29 29 C 1.37618 * 119.74245 * 0.02562 * 28 19 18 30 30 H 1.09004 * 109.46577 * 154.27782 * 1 2 3 31 31 H 1.09001 * 109.47378 * 34.27936 * 1 2 3 32 32 H 1.08999 * 109.47255 * 274.27700 * 1 2 3 33 33 H 1.09004 * 117.49683 * 359.97438 * 4 2 1 34 34 H 1.09000 * 117.50213 * 144.99616 * 4 2 1 35 35 H 1.09000 * 117.50064 * 0.02562 * 9 7 5 36 36 H 1.08998 * 117.49929 * 144.99225 * 9 7 5 37 37 H 0.96997 * 120.00312 * 33.62594 * 12 10 9 38 38 H 1.08003 * 119.87172 * 359.97438 * 17 16 13 39 39 H 1.07994 * 120.12916 * 180.27878 * 18 17 16 40 40 H 0.97003 * 120.00408 * 179.97438 * 23 22 20 41 41 H 1.07996 * 120.12504 * 179.97438 * 28 19 18 42 42 H 1.08005 * 119.87314 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2365 -1.1207 -0.7654 5 6 2.2365 -1.1212 0.7646 6 1 1.6113 -1.8591 1.2673 7 6 3.5490 -0.7763 1.4712 8 1 4.4456 -0.8394 0.8545 9 6 3.6784 -1.1584 2.9470 10 6 3.5072 0.3088 2.5489 11 1 2.5446 0.7771 2.7546 12 7 4.6753 1.1842 2.6731 13 16 4.4772 2.7760 3.0848 14 8 5.7807 3.3373 3.1560 15 8 3.4568 3.2856 2.2372 16 6 3.8289 2.8143 4.7227 17 6 2.4566 2.8101 4.9196 18 6 1.9391 2.8341 6.1946 19 6 2.8086 2.8751 7.3002 20 6 2.2882 2.9068 8.6146 21 1 1.3019 2.5149 8.8145 22 6 3.0514 3.4459 9.6564 23 7 4.0688 4.2231 9.3876 24 14 2.6172 3.0559 11.4309 25 1 2.6974 1.5892 11.6493 26 1 3.5712 3.7446 12.3368 27 1 1.2373 3.5242 11.7173 28 6 4.1996 2.8848 7.0882 29 6 4.6948 2.8546 5.8045 30 1 -0.3633 -0.9259 -0.4460 31 1 -0.3634 0.8492 -0.5788 32 1 -0.3634 0.0766 1.0248 33 1 1.6113 -1.8582 -1.2687 34 1 3.1714 -0.8746 -1.2690 35 1 2.8287 -1.6559 3.4145 36 1 4.6601 -1.4729 3.3012 37 1 5.5648 0.8315 2.5142 38 1 1.7912 2.7838 4.0693 39 1 0.8698 2.8262 6.3458 40 1 4.5976 4.5971 10.1097 41 1 4.8759 2.9166 7.9296 42 1 5.7621 2.8623 5.6394 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464570441.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:51 Heat of formation + Delta-G solvation = -41.355436 kcal Electronic energy + Delta-G solvation = -24485.189429 eV Core-core repulsion = 20942.940128 eV Total energy + Delta-G solvation = -3542.249301 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.87861 -39.37675 -38.15640 -37.22832 -36.80971 -35.80749 -33.02273 -32.06838 -31.29699 -29.32557 -27.62197 -24.34508 -23.33881 -23.18144 -22.87381 -21.76862 -20.87047 -20.35680 -19.42433 -18.71465 -18.14589 -17.47431 -17.08528 -16.33967 -16.16667 -15.82130 -15.27116 -15.12563 -14.95059 -14.35680 -14.15016 -13.97901 -13.91107 -13.71075 -13.56231 -13.20412 -13.11950 -13.03656 -12.99745 -12.91945 -12.88630 -12.74421 -12.55596 -12.32093 -12.07740 -12.02336 -11.56119 -11.49170 -11.32866 -11.19364 -11.01199 -10.44068 -9.82566 -9.70013 -9.54992 -8.87079 -6.65047 -0.34284 0.48842 1.05894 1.35810 1.44494 1.50548 2.10934 2.19233 2.52139 2.66155 2.92466 3.12523 3.51321 3.55986 3.73015 3.86940 3.98815 4.09495 4.13969 4.26917 4.31062 4.33734 4.45515 4.50736 4.60120 4.87081 4.94065 4.95924 4.97973 5.00221 5.01170 5.10057 5.23996 5.26279 5.30609 5.31992 5.40117 5.52369 5.52749 5.59566 5.76271 5.92866 6.14307 6.15445 6.49061 6.68259 6.81279 8.07913 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.017260 B = 0.003344 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.816297 B = 8370.535877 C = 9065.623749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.167 4.167 3 H 0.087 0.913 4 C -0.160 4.160 5 C -0.125 4.125 6 H 0.118 0.882 7 C -0.119 4.119 8 H 0.117 0.883 9 C -0.169 4.169 10 C 0.074 3.926 11 H 0.124 0.876 12 N -1.081 6.081 13 S 2.727 3.273 14 O -1.006 7.006 15 O -0.998 6.998 16 C -0.795 4.795 17 C 0.000 4.000 18 C -0.254 4.254 19 C 0.113 3.887 20 C -0.467 4.467 21 H 0.094 0.906 22 C 0.034 3.966 23 N -0.799 5.799 24 Si 0.993 3.007 25 H -0.255 1.255 26 H -0.266 1.266 27 H -0.255 1.255 28 C -0.208 4.208 29 C -0.021 4.021 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.423 0.577 38 H 0.125 0.875 39 H 0.112 0.888 40 H 0.298 0.702 41 H 0.110 0.890 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.485 -11.950 -10.392 16.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.186 4.186 3 H 0.105 0.895 4 C -0.197 4.197 5 C -0.143 4.143 6 H 0.136 0.864 7 C -0.139 4.139 8 H 0.134 0.866 9 C -0.208 4.208 10 C -0.034 4.034 11 H 0.142 0.858 12 N -0.838 5.838 13 S 2.823 3.177 14 O -0.997 6.997 15 O -0.988 6.988 16 C -0.888 4.888 17 C -0.020 4.020 18 C -0.275 4.275 19 C 0.109 3.891 20 C -0.493 4.493 21 H 0.112 0.888 22 C -0.186 4.186 23 N -0.422 5.422 24 Si 0.812 3.188 25 H -0.179 1.179 26 H -0.190 1.190 27 H -0.178 1.178 28 C -0.228 4.228 29 C -0.041 4.041 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.127 0.873 34 H 0.113 0.887 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.259 0.741 38 H 0.143 0.857 39 H 0.131 0.869 40 H 0.109 0.891 41 H 0.128 0.872 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.250 -10.956 -10.832 15.571 hybrid contribution 0.277 -0.018 1.468 1.494 sum -1.974 -10.974 -9.364 14.561 Atomic orbital electron populations 1.21368 0.92099 1.02438 1.01973 1.22460 0.95947 0.94558 1.05616 0.89464 1.23215 1.02631 1.00816 0.93056 1.21919 0.96647 1.01711 0.94036 0.86447 1.22350 0.98521 1.01669 0.91387 0.86554 1.23600 1.04678 0.96052 0.96472 1.21492 0.88750 0.87594 1.05560 0.85803 1.54891 1.14549 1.28757 1.85571 1.00233 0.71847 0.72218 0.73433 1.93466 1.41015 1.76852 1.88365 1.93466 1.60481 1.78405 1.66429 1.29578 1.02623 1.36394 1.20179 1.20433 0.92775 0.91847 0.96960 1.21250 0.98585 1.15057 0.92576 1.18190 0.92394 0.84873 0.93641 1.20229 1.03199 1.33340 0.92562 0.88806 1.27051 0.93167 0.91492 1.06871 1.69860 1.14664 1.19674 1.38039 0.85077 0.79695 0.80023 0.74023 1.17907 1.19031 1.17844 1.21354 0.95873 1.09847 0.95753 1.20441 0.97549 0.93586 0.92541 0.91297 0.92191 0.92475 0.87293 0.88720 0.87041 0.87383 0.74077 0.85702 0.86945 0.89057 0.87204 0.86904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.14 10.19 71.98 0.73 -1.41 16 2 C -0.17 -3.40 6.05 -10.79 -0.07 -3.46 16 3 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 4 C -0.16 -2.59 9.90 30.60 0.30 -2.29 16 5 C -0.12 -2.27 5.59 -10.79 -0.06 -2.33 16 6 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 7 C -0.12 -2.35 5.79 -10.80 -0.06 -2.42 16 8 H 0.12 2.09 8.14 -2.38 -0.02 2.08 16 9 C -0.17 -3.41 10.18 30.59 0.31 -3.09 16 10 C 0.07 1.89 6.11 44.99 0.27 2.17 16 11 H 0.12 3.46 8.11 -2.39 -0.02 3.44 16 12 N -1.08 -30.48 6.04 -169.40 -1.02 -31.50 16 13 S 2.73 103.06 5.71 -56.49 -0.32 102.74 16 14 O -1.01 -42.86 17.26 -128.00 -2.21 -45.07 16 15 O -1.00 -41.29 17.01 -128.00 -2.18 -43.46 16 16 C -0.79 -34.86 5.97 22.46 0.13 -34.73 16 17 C 0.00 -0.02 9.49 22.22 0.21 0.19 16 18 C -0.25 -12.06 9.80 22.73 0.22 -11.84 16 19 C 0.11 5.83 5.58 -21.29 -0.12 5.71 16 20 C -0.47 -23.23 9.05 23.46 0.21 -23.02 16 21 H 0.09 4.36 7.91 -2.91 -0.02 4.34 16 22 C 0.03 1.55 5.14 85.26 0.44 1.99 16 23 N -0.80 -39.23 10.95 21.83 0.24 -38.99 16 24 Si 0.99 34.43 29.60 68.60 2.03 36.46 16 25 H -0.26 -8.60 7.11 99.48 0.71 -7.90 16 26 H -0.27 -8.78 7.11 99.48 0.71 -8.07 16 27 H -0.25 -8.50 7.11 99.48 0.71 -7.79 16 28 C -0.21 -10.75 8.70 22.73 0.20 -10.55 16 29 C -0.02 -1.00 9.49 22.22 0.21 -0.79 16 30 H 0.07 0.98 7.90 -2.38 -0.02 0.96 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.11 1.40 8.05 -2.38 -0.02 1.38 16 34 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.42 9.69 8.96 -96.75 -0.87 8.83 16 38 H 0.13 4.84 7.59 -2.91 -0.02 4.82 16 39 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 40 H 0.30 13.07 8.30 -92.71 -0.77 12.30 16 41 H 0.11 5.81 6.15 -2.91 -0.02 5.80 16 42 H 0.11 4.97 7.60 -2.91 -0.02 4.95 16 Total: -1.00 -63.81 368.67 -0.36 -64.16 By element: Atomic # 1 Polarization: 41.35 SS G_CDS: 0.16 Total: 41.52 kcal Atomic # 6 Polarization: -88.81 SS G_CDS: 2.94 Total: -85.86 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: -0.78 Total: -70.49 kcal Atomic # 8 Polarization: -84.14 SS G_CDS: -4.39 Total: -88.53 kcal Atomic # 14 Polarization: 34.43 SS G_CDS: 2.03 Total: 36.46 kcal Atomic # 16 Polarization: 103.06 SS G_CDS: -0.32 Total: 102.74 kcal Total: -63.81 -0.36 -64.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464570441.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.809 kcal (2) G-P(sol) polarization free energy of solvation -63.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds