Wall clock time and date at job start Sat Apr 11 2020 00:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34775 * 125.49874 * 2 1 4 4 C 1.36566 * 108.84463 * 179.97438 * 3 2 1 5 5 C 1.48507 * 126.24662 * 179.97438 * 4 3 2 6 6 N 1.34043 * 126.67199 * 359.68241 * 5 4 3 7 7 N 1.28986 * 107.26968 * 179.89308 * 6 5 4 8 8 N 1.28732 * 108.94068 * 0.38040 * 7 6 5 9 9 H 0.96996 * 125.34723 * 179.75523 * 8 7 6 10 10 N 1.28879 * 109.31344 * 359.75644 * 8 7 6 11 11 C 1.40767 * 107.50737 * 359.74271 * 4 3 2 12 12 C 1.37739 * 125.50085 * 179.97438 * 2 1 3 13 13 C 1.46546 * 126.12057 * 0.02562 * 12 2 1 14 14 O 1.21619 * 119.99999 * 179.72189 * 13 12 2 15 15 O 1.34888 * 119.99545 * 0.02562 * 13 12 2 16 16 C 1.45208 * 116.99456 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.46660 * 179.97438 * 16 15 13 18 18 O 1.42899 * 109.47336 * 65.00187 * 17 16 15 19 19 C 1.42904 * 113.99846 * 179.97438 * 18 17 16 20 20 C 1.50702 * 109.46932 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99910 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00159 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00151 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99846 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47262 * 90.00105 * 24 22 20 26 26 H 1.48503 * 109.47193 * 210.00431 * 24 22 20 27 27 H 1.48507 * 109.47266 * 330.00100 * 24 22 20 28 28 H 1.08999 * 109.46584 * 270.02476 * 1 2 3 29 29 H 1.08996 * 109.47038 * 30.02512 * 1 2 3 30 30 H 1.09004 * 109.46829 * 150.02980 * 1 2 3 31 31 H 1.08004 * 125.57742 * 359.94033 * 3 2 1 32 32 H 1.07992 * 126.55383 * 180.26385 * 11 4 3 33 33 H 1.08994 * 109.47061 * 299.99750 * 16 15 13 34 34 H 1.08995 * 109.46854 * 59.99911 * 16 15 13 35 35 H 1.09006 * 109.46868 * 185.00199 * 17 16 15 36 36 H 1.08997 * 109.47361 * 304.99667 * 17 16 15 37 37 H 1.09001 * 109.47027 * 299.99554 * 19 18 17 38 38 H 1.08999 * 109.47145 * 59.99743 * 19 18 17 39 39 H 0.97005 * 119.99657 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2476 1.0972 0.0000 4 6 3.5560 0.7059 0.0006 5 6 4.7405 1.6016 0.0002 6 7 4.7305 2.9420 -0.0066 7 7 5.9593 3.3341 -0.0019 8 7 6.7275 2.3012 -0.0006 9 1 7.6972 2.3230 -0.0006 10 7 6.0059 1.2333 0.0008 11 6 3.5769 -0.7016 0.0070 12 6 2.2649 -1.1213 0.0005 13 6 1.8028 -2.5121 0.0006 14 8 2.6106 -3.4212 -0.0041 15 8 0.4816 -2.7837 -0.0004 16 6 0.0965 -4.1838 -0.0008 17 6 -1.4296 -4.2929 -0.0012 18 8 -1.9450 -3.7587 -1.2223 19 6 -3.3693 -3.8132 -1.3251 20 6 -3.8005 -3.2263 -2.6444 21 1 -3.0609 -2.8489 -3.3351 22 6 -5.1393 -3.1700 -2.9693 23 7 -5.5155 -2.6583 -4.1209 24 14 -6.4185 -3.8221 -1.7744 25 1 -6.8484 -2.7298 -0.8647 26 1 -7.5921 -4.3260 -2.5320 27 1 -5.8321 -4.9288 -0.9766 28 1 -0.3632 0.0004 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8903 -0.5134 31 1 1.8973 2.1189 -0.0009 32 1 4.4539 -1.3318 0.0130 33 1 0.4961 -4.6702 -0.8905 34 1 0.4950 -4.6704 0.8894 35 1 -1.7190 -5.3400 0.0881 36 1 -1.8343 -3.7311 0.8406 37 1 -3.6985 -4.8505 -1.2635 38 1 -3.8145 -3.2418 -0.5107 39 1 -6.4574 -2.6191 -4.3496 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592562352.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:55 Heat of formation + Delta-G solvation = 20.770278 kcal Electronic energy + Delta-G solvation = -25629.938271 eV Core-core repulsion = 21576.382480 eV Total energy + Delta-G solvation = -4053.555792 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.127 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.33833 -42.65839 -41.02663 -38.77839 -37.45756 -35.48988 -34.88789 -34.82091 -33.11531 -32.04716 -30.72236 -29.48077 -27.84571 -25.90284 -25.08969 -24.32995 -23.96496 -23.15827 -21.53844 -21.04288 -20.07912 -19.08472 -18.75742 -18.12623 -18.05471 -17.93470 -17.12294 -16.67862 -16.52258 -16.18614 -16.04672 -15.60834 -15.11431 -14.81140 -14.70782 -14.46724 -14.33618 -14.03298 -13.69521 -13.53721 -13.38363 -13.08098 -12.99233 -12.96197 -12.63731 -12.32098 -12.30084 -12.05773 -11.93496 -11.86983 -11.81991 -11.73674 -11.33133 -10.91518 -10.38609 -9.82848 -9.38915 -8.35116 -6.43324 0.08677 0.11253 0.58044 1.36227 1.39238 1.42352 1.47289 1.49713 1.76997 1.79320 2.14036 2.31269 2.86086 2.96413 2.98161 3.22497 3.53521 3.92652 3.95928 4.03167 4.14270 4.18977 4.39786 4.41505 4.45213 4.50415 4.53858 4.60391 4.70611 4.79523 4.90179 4.95591 5.03278 5.26515 5.36022 5.45091 5.66434 5.71309 5.93016 5.98105 6.59462 6.61615 6.73201 7.20998 7.23334 8.81833 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.020961 B = 0.002358 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.467450 B =11870.897557 C =12783.490979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.402 5.402 3 C 0.110 3.890 4 C -0.138 4.138 5 C 0.255 3.745 6 N -0.296 5.296 7 N -0.058 5.058 8 N -0.204 5.204 9 H 0.493 0.507 10 N -0.308 5.308 11 C -0.056 4.056 12 C -0.067 4.067 13 C 0.539 3.461 14 O -0.529 6.529 15 O -0.350 6.350 16 C 0.074 3.926 17 C 0.052 3.948 18 O -0.405 6.405 19 C 0.179 3.821 20 C -0.544 4.544 21 H 0.028 0.972 22 C 0.011 3.989 23 N -0.943 5.943 24 Si 0.956 3.044 25 H -0.257 1.257 26 H -0.278 1.278 27 H -0.242 1.242 28 H 0.102 0.898 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.216 0.784 32 H 0.160 0.840 33 H 0.068 0.932 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.015 0.985 38 H 0.018 0.982 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.355 7.578 15.029 25.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.074 5.074 3 C -0.034 4.034 4 C -0.148 4.148 5 C -0.025 4.025 6 N -0.169 5.169 7 N -0.053 5.053 8 N -0.055 5.055 9 H 0.352 0.648 10 N -0.160 5.160 11 C -0.084 4.084 12 C -0.175 4.175 13 C 0.386 3.614 14 O -0.420 6.420 15 O -0.267 6.267 16 C 0.001 3.999 17 C -0.025 4.025 18 O -0.325 6.325 19 C 0.103 3.897 20 C -0.582 4.582 21 H 0.046 0.954 22 C -0.186 4.186 23 N -0.582 5.582 24 Si 0.777 3.223 25 H -0.182 1.182 26 H -0.204 1.204 27 H -0.165 1.165 28 H 0.120 0.880 29 H 0.135 0.865 30 H 0.105 0.895 31 H 0.233 0.767 32 H 0.177 0.823 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.033 0.967 38 H 0.036 0.964 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 19.421 7.890 14.762 25.639 hybrid contribution -0.241 -0.888 -0.086 0.924 sum 19.179 7.002 14.676 25.145 Atomic orbital electron populations 1.22655 0.73251 1.06595 1.05817 1.44121 1.08350 1.04581 1.50330 1.22418 0.88474 0.93209 0.99311 1.16304 0.88683 0.90495 1.19294 1.22753 0.90326 0.88952 1.00502 1.76045 1.11132 1.09957 1.19726 1.78810 0.96073 1.15301 1.15098 1.47738 1.13560 0.99740 1.44430 0.64849 1.74942 1.03861 1.14034 1.23196 1.21283 0.94481 0.93518 0.99078 1.19242 0.90784 0.84318 1.23184 1.19919 0.80904 0.88144 0.72457 1.90865 1.55842 1.46850 1.48405 1.86680 1.24614 1.31591 1.83799 1.23298 0.94384 0.78316 1.03922 1.22744 0.91393 0.99988 0.88345 1.87925 1.22869 1.83399 1.38297 1.20352 0.78232 0.95566 0.95503 1.21149 0.92973 1.41268 1.02796 0.95363 1.25857 1.00602 0.94716 0.97468 1.70042 1.17684 1.46315 1.24204 0.85609 0.77759 0.80133 0.78831 1.18181 1.20378 1.16534 0.87951 0.86519 0.89543 0.76709 0.82258 0.91361 0.87025 0.89246 0.91130 0.96697 0.96412 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.06 10.54 127.77 1.35 2.40 16 2 N -0.40 -8.62 3.14 -534.14 -1.68 -10.30 16 3 C 0.11 2.03 11.29 83.85 0.95 2.98 16 4 C -0.14 -3.03 6.09 -20.31 -0.12 -3.15 16 5 C 0.25 5.54 8.17 137.40 1.12 6.66 16 6 N -0.30 -6.45 12.53 -52.16 -0.65 -7.10 16 7 N -0.06 -1.04 13.47 37.02 0.50 -0.54 16 8 N -0.20 -2.64 7.90 37.02 0.29 -2.35 16 9 H 0.49 1.38 8.96 -347.54 -3.12 -1.74 16 10 N -0.31 -5.88 12.40 -52.10 -0.65 -6.52 16 11 C -0.06 -1.37 10.62 22.77 0.24 -1.13 16 12 C -0.07 -1.74 6.87 40.27 0.28 -1.47 16 13 C 0.54 16.20 7.92 69.99 0.55 16.76 16 14 O -0.53 -17.82 16.67 19.45 0.32 -17.50 16 15 O -0.35 -10.43 7.59 -55.36 -0.42 -10.85 16 16 C 0.07 2.02 5.86 71.98 0.42 2.44 16 17 C 0.05 1.52 6.33 71.98 0.46 1.98 16 18 O -0.40 -17.42 10.30 -145.57 -1.50 -18.91 16 19 C 0.18 8.35 4.76 71.24 0.34 8.68 16 20 C -0.54 -31.84 9.99 25.60 0.26 -31.59 16 21 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 22 C 0.01 0.65 5.47 84.65 0.46 1.12 16 23 N -0.94 -58.01 13.96 21.45 0.30 -57.71 16 24 Si 0.96 41.33 27.47 68.60 1.88 43.22 16 25 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 26 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 27 H -0.24 -9.46 6.54 99.48 0.65 -8.81 16 28 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.09 2.23 6.12 -2.38 -0.01 2.21 16 31 H 0.22 2.54 8.06 -2.91 -0.02 2.52 16 32 H 0.16 3.74 8.06 -2.91 -0.02 3.71 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.02 0.68 7.20 -2.39 -0.02 0.66 16 38 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 39 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -79.09 351.24 2.65 -76.45 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -2.06 Total: 6.44 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 6.30 Total: 5.69 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -1.89 Total: -84.53 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: -1.59 Total: -47.27 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 1.88 Total: 43.22 kcal Total: -79.09 2.65 -76.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592562352.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.218 kcal (2) G-P(sol) polarization free energy of solvation -79.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds