Wall clock time and date at job start Sat Apr 11 2020 00:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46908 * 109.46920 * 2 1 4 4 C 1.46899 * 110.99593 * 287.95604 * 3 2 1 5 5 C 1.50707 * 109.46745 * 160.36257 * 4 3 2 6 6 H 1.07996 * 119.99832 * 4.72713 * 5 4 3 7 7 C 1.37872 * 120.00071 * 184.73957 * 5 4 3 8 8 N 1.31518 * 119.99897 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00264 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47379 * 89.99707 * 9 7 5 11 11 H 1.48504 * 109.47469 * 209.99573 * 9 7 5 12 12 H 1.48502 * 109.46946 * 329.99774 * 9 7 5 13 13 C 1.46890 * 111.00086 * 163.99895 * 3 2 1 14 14 C 1.50705 * 109.47365 * 293.95517 * 13 3 2 15 15 C 1.38311 * 119.88658 * 105.00014 * 14 13 3 16 16 C 1.38018 * 120.12871 * 179.97438 * 15 14 13 17 17 C 1.39325 * 119.91006 * 359.97438 * 16 15 14 18 18 C 1.48456 * 120.11195 * 179.97438 * 17 16 15 19 19 N 1.34048 * 126.67296 * 359.68770 * 18 17 16 20 20 N 1.28990 * 107.26942 * 179.89582 * 19 18 17 21 21 N 1.28738 * 108.93841 * 0.37364 * 20 19 18 22 22 H 0.96999 * 125.33502 * 179.78183 * 21 20 19 23 23 N 1.28869 * 109.31911 * 359.76372 * 21 20 19 24 24 C 1.39264 * 119.77550 * 0.02562 * 17 16 15 25 25 C 1.38175 * 119.86839 * 359.74180 * 24 17 16 26 26 Cl 1.73598 * 119.95175 * 180.27672 * 25 24 17 27 27 H 1.09006 * 109.46629 * 179.30767 * 1 2 3 28 28 H 1.08996 * 109.47688 * 299.30720 * 1 2 3 29 29 H 1.09003 * 109.47426 * 59.31748 * 1 2 3 30 30 H 1.08997 * 109.47387 * 240.00356 * 2 1 3 31 31 H 1.08995 * 109.47410 * 119.99367 * 2 1 3 32 32 H 1.08999 * 109.47156 * 280.35593 * 4 3 2 33 33 H 1.08995 * 109.47881 * 40.35984 * 4 3 2 34 34 H 0.96996 * 120.00008 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47350 * 53.95339 * 13 3 2 36 36 H 1.09001 * 109.47292 * 173.95381 * 13 3 2 37 37 H 1.08000 * 119.93599 * 359.95548 * 15 14 13 38 38 H 1.08004 * 120.04243 * 179.97438 * 16 15 14 39 39 H 1.07997 * 120.06644 * 180.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7964 2.0222 -1.3047 5 6 1.8476 3.5202 -1.1474 6 1 2.1032 3.9544 -0.1922 7 6 1.5679 4.3363 -2.2229 8 7 1.2568 3.8075 -3.3862 9 14 1.6306 6.1930 -2.0278 10 1 3.0007 6.6769 -2.3342 11 1 0.6630 6.8220 -2.9624 12 1 1.2780 6.5562 -0.6317 13 6 3.4379 1.4421 0.3780 14 6 3.5934 1.0068 1.8124 15 6 4.1077 -0.2442 2.1012 16 6 4.2528 -0.6477 3.4131 17 6 3.8807 0.2075 4.4481 18 6 4.0343 -0.2222 5.8608 19 7 4.5081 -1.3995 6.2926 20 7 4.4802 -1.3739 7.5819 21 7 4.0049 -0.2411 7.9671 22 1 3.8771 0.0290 8.8899 23 7 3.7259 0.4775 6.9345 24 6 3.3633 1.4663 4.1530 25 6 3.2265 1.8627 2.8364 26 17 2.5885 3.4341 2.4662 27 1 -0.3633 -1.0277 -0.0124 28 1 -0.3634 0.5030 0.8961 29 1 -0.3634 0.5244 -0.8838 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 2.5711 1.7035 -2.0020 33 1 0.8191 1.7305 -1.6892 34 1 1.0604 4.3815 -4.1429 35 1 4.0129 0.7781 -0.2674 36 1 3.8029 2.4631 0.2665 37 1 4.3961 -0.9068 1.2985 38 1 4.6541 -1.6251 3.6369 39 1 3.0738 2.1331 4.9517 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604290660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:58 Heat of formation + Delta-G solvation = 144.944899 kcal Electronic energy + Delta-G solvation = -24054.808891 eV Core-core repulsion = 20447.346880 eV Total energy + Delta-G solvation = -3607.462011 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.66489 -39.56666 -36.85074 -36.01288 -34.57683 -33.81286 -32.57009 -31.48104 -30.78437 -29.70845 -27.17728 -25.38900 -24.88487 -23.26761 -22.69166 -22.36024 -21.18297 -19.68993 -19.40975 -17.35293 -17.01393 -16.42753 -15.60667 -15.49803 -14.91070 -14.58384 -14.23134 -13.98908 -13.79799 -13.55439 -13.32714 -13.14305 -12.66793 -12.35663 -11.90329 -11.78166 -11.72129 -11.50889 -11.47042 -11.27949 -11.20575 -10.97402 -10.83727 -10.80542 -10.68680 -10.57475 -10.34212 -10.19197 -9.56823 -9.16586 -8.79145 -8.42657 -8.34580 -7.22867 -5.96954 -3.96316 0.56169 0.98939 1.25646 2.00286 2.19159 2.53731 3.34354 3.41058 3.45186 3.50760 3.66933 4.01875 4.47249 4.80478 4.87366 4.96096 5.11909 5.20273 5.23356 5.38846 5.39765 5.62209 5.72524 5.79958 5.86327 6.02222 6.10511 6.12874 6.19618 6.30034 6.35770 6.42142 6.55718 6.63033 6.73247 6.86473 7.26154 7.36442 7.90506 7.92170 8.15389 8.21982 8.59174 9.13189 9.67351 11.14018 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.020907 B = 0.003340 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.966000 B = 8380.640843 C = 9186.591138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 N -0.522 5.522 4 C 0.192 3.808 5 C -0.499 4.499 6 H 0.071 0.929 7 C 0.054 3.946 8 N -0.902 5.902 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.091 3.909 14 C -0.033 4.033 15 C -0.111 4.111 16 C -0.075 4.075 17 C -0.025 4.025 18 C 0.229 3.771 19 N -0.269 5.269 20 N -0.052 5.052 21 N -0.229 5.229 22 H 0.475 0.525 23 N -0.294 5.294 24 C -0.076 4.076 25 C -0.019 4.019 26 Cl -0.032 7.032 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.022 0.978 31 H 0.058 0.942 32 H -0.012 1.012 33 H 0.039 0.961 34 H 0.259 0.741 35 H 0.034 0.966 36 H 0.100 0.900 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.639 -8.788 18.862 21.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.080 4.080 3 N -0.246 5.246 4 C 0.067 3.933 5 C -0.538 4.538 6 H 0.089 0.911 7 C -0.146 4.146 8 N -0.542 5.542 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.198 1.198 13 C -0.036 4.036 14 C -0.035 4.035 15 C -0.130 4.130 16 C -0.095 4.095 17 C -0.028 4.028 18 C -0.050 4.050 19 N -0.142 5.142 20 N -0.047 5.047 21 N -0.075 5.075 22 H 0.329 0.671 23 N -0.146 5.146 24 C -0.097 4.097 25 C -0.046 4.046 26 Cl -0.002 7.002 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.006 0.994 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.118 0.882 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.411 -8.750 19.470 22.021 hybrid contribution 0.154 1.163 -0.324 1.217 sum 5.565 -7.588 19.146 21.334 Atomic orbital electron populations 1.21719 0.95511 0.99817 1.02886 1.22042 0.96107 0.90917 0.98972 1.62185 1.13735 1.14198 1.34523 1.19804 0.96526 0.94374 0.82557 1.21277 1.45372 0.90529 0.96572 0.91084 1.24957 0.95758 0.98568 0.95337 1.69953 1.48172 1.35041 1.01046 0.86618 0.77695 0.85904 0.77959 1.20808 1.21402 1.19848 1.21081 0.91622 1.02484 0.88459 1.20252 0.94097 0.92567 0.96593 1.21016 1.00219 0.95521 0.96262 1.21131 0.97646 0.99320 0.91444 1.16967 1.05435 0.95101 0.85336 1.23640 0.98722 0.88127 0.94520 1.76079 1.18468 1.19453 1.00200 1.78898 1.13030 1.05549 1.07257 1.47721 1.39827 1.08906 1.11048 0.67106 1.74972 1.22375 1.23047 0.94161 1.20983 0.98089 0.95112 0.95525 1.20663 1.00923 0.90148 0.92911 1.98435 1.84417 1.22825 1.94547 0.93809 0.92488 0.92002 0.96028 0.92372 0.99404 0.94348 0.93103 0.94755 0.88197 0.84630 0.84507 0.84342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.99 37.15 0.37 -2.03 16 2 C 0.05 0.84 5.55 -3.82 -0.02 0.82 16 3 N -0.52 -10.52 4.28 -237.52 -1.02 -11.53 16 4 C 0.19 4.75 4.59 -4.97 -0.02 4.73 16 5 C -0.50 -13.42 8.61 -34.44 -0.30 -13.71 16 6 H 0.07 1.86 6.76 -52.49 -0.35 1.51 16 7 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.09 1.63 4.25 -4.98 -0.02 1.61 16 14 C -0.03 -0.50 4.49 -104.53 -0.47 -0.96 16 15 C -0.11 -1.39 8.65 -39.64 -0.34 -1.73 16 16 C -0.08 -0.88 9.70 -39.26 -0.38 -1.26 16 17 C -0.02 -0.31 5.88 -104.90 -0.62 -0.92 16 18 C 0.23 2.79 7.94 -156.31 -1.24 1.55 16 19 N -0.27 -3.28 12.23 32.15 0.39 -2.89 16 20 N -0.05 -0.53 13.47 60.35 0.81 0.28 16 21 N -0.23 -1.76 7.90 60.35 0.48 -1.28 16 22 H 0.47 1.26 8.96 -340.37 -3.05 -1.80 16 23 N -0.29 -3.12 12.08 32.17 0.39 -2.73 16 24 C -0.08 -1.01 9.48 -39.22 -0.37 -1.38 16 25 C -0.02 -0.29 6.31 -39.54 -0.25 -0.54 16 26 Cl -0.03 -0.55 26.66 -51.86 -1.38 -1.93 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 1.17 6.52 -51.93 -0.34 0.83 16 30 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 31 H 0.06 0.91 6.12 -51.93 -0.32 0.59 16 32 H -0.01 -0.31 8.00 -51.93 -0.42 -0.73 16 33 H 0.04 1.03 6.24 -51.93 -0.32 0.70 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.03 0.58 7.92 -51.93 -0.41 0.17 16 36 H 0.10 1.98 6.74 -51.93 -0.35 1.63 16 37 H 0.14 1.44 7.99 -52.49 -0.42 1.02 16 38 H 0.14 1.39 7.89 -52.48 -0.41 0.97 16 39 H 0.14 1.70 7.88 -52.49 -0.41 1.28 16 LS Contribution 345.32 15.07 5.20 5.20 Total: -1.00 -31.29 345.32 -10.37 -41.67 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -7.21 Total: -5.25 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -3.76 Total: -12.42 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 1.79 Total: -43.82 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.38 Total: -1.93 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.29 -10.37 -41.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604290660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.613 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds