Wall clock time and date at job start Sat Apr 11 2020 00:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46904 * 109.46772 * 2 1 4 4 C 1.46901 * 111.00049 * 299.45122 * 3 2 1 5 5 C 1.50700 * 109.47366 * 293.97218 * 4 3 2 6 6 H 1.07999 * 119.99983 * 355.07652 * 5 4 3 7 7 C 1.37874 * 119.99871 * 175.07639 * 5 4 3 8 8 N 1.31513 * 120.00424 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99727 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47334 * 90.00121 * 9 7 5 11 11 H 1.48502 * 109.46776 * 209.99923 * 9 7 5 12 12 H 1.48497 * 109.47225 * 329.99571 * 9 7 5 13 13 C 1.46893 * 111.00134 * 63.41057 * 3 2 1 14 14 C 1.50701 * 109.47457 * 66.04540 * 13 3 2 15 15 C 1.38309 * 119.93786 * 89.99560 * 14 13 3 16 16 C 1.38413 * 120.22687 * 179.97438 * 15 14 13 17 17 Cl 1.73595 * 119.95570 * 179.74864 * 16 15 14 18 18 C 1.38164 * 120.08885 * 0.03119 * 16 15 14 19 19 C 1.39272 * 119.86577 * 359.97438 * 18 16 15 20 20 C 1.48462 * 120.10486 * 180.02562 * 19 18 16 21 21 N 1.34048 * 126.67093 * 179.67082 * 20 19 18 22 22 N 1.28985 * 107.27189 * 179.83346 * 21 20 19 23 23 N 1.28727 * 108.93932 * 0.42672 * 22 21 20 24 24 H 0.97002 * 125.34077 * 179.70368 * 23 22 21 25 25 N 1.28870 * 109.32024 * 359.73057 * 23 22 21 26 26 C 1.38016 * 119.93053 * 270.02237 * 14 13 3 27 27 H 1.09006 * 109.47222 * 301.29354 * 1 2 3 28 28 H 1.09005 * 109.47332 * 61.29281 * 1 2 3 29 29 H 1.09002 * 109.47386 * 181.28969 * 1 2 3 30 30 H 1.08995 * 109.46954 * 240.00116 * 2 1 3 31 31 H 1.08992 * 109.47384 * 119.99573 * 2 1 3 32 32 H 1.08996 * 109.46826 * 53.97404 * 4 3 2 33 33 H 1.09005 * 109.46987 * 173.97299 * 4 3 2 34 34 H 0.96997 * 120.00319 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47316 * 306.04011 * 13 3 2 36 36 H 1.09005 * 109.47586 * 186.04236 * 13 3 2 37 37 H 1.08005 * 119.88798 * 0.02758 * 15 14 13 38 38 H 1.08001 * 120.06668 * 179.97438 * 18 16 15 39 39 H 1.08001 * 120.04650 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5593 2.1061 -1.1942 5 6 2.1922 1.5018 -2.4211 6 1 2.9288 0.7187 -2.3186 7 6 1.8308 1.9486 -3.6744 8 7 0.9341 2.9025 -3.7992 9 14 2.6148 1.1989 -5.1952 10 1 1.8064 0.0386 -5.6480 11 1 2.6698 2.2158 -6.2760 12 1 3.9915 0.7467 -4.8705 13 6 1.6163 2.0860 1.2263 14 6 2.3064 1.4618 2.4118 15 6 3.5392 1.9364 2.8215 16 6 4.1781 1.3679 3.9098 17 17 5.7283 1.9648 4.4140 18 6 3.5863 0.3222 4.5919 19 6 2.3450 -0.1587 4.1826 20 6 1.7041 -1.2817 4.9120 21 7 0.5171 -1.8409 4.6375 22 7 0.3287 -2.7820 5.4992 23 7 1.3374 -2.8254 6.2978 24 1 1.4402 -3.4428 7.0388 25 7 2.1888 -1.9193 5.9589 26 6 1.7070 0.4174 3.0862 27 1 -0.3634 0.5338 0.8782 28 1 -0.3634 0.4936 -0.9014 29 1 -0.3634 -1.0274 0.0231 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8899 32 1 0.4746 2.0291 -1.2695 33 1 1.8446 3.1554 -1.1176 34 1 0.6801 3.2171 -4.6809 35 1 0.5364 2.0072 1.3515 36 1 1.8979 3.1365 1.1538 37 1 4.0046 2.7539 2.2909 38 1 4.0853 -0.1213 5.4409 39 1 0.7444 0.0479 2.7650 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604290709.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:02 Heat of formation + Delta-G solvation = 145.956418 kcal Electronic energy + Delta-G solvation = -24011.396069 eV Core-core repulsion = 20403.977920 eV Total energy + Delta-G solvation = -3607.418149 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.66150 -39.72053 -37.21919 -36.44131 -34.59644 -33.84550 -32.68149 -31.45632 -30.66640 -29.36455 -27.22267 -25.16423 -24.72786 -24.50347 -23.09711 -22.14492 -21.13406 -19.53816 -19.13781 -17.34724 -16.87212 -16.20373 -15.89335 -15.71486 -15.05705 -14.85912 -14.55768 -14.06877 -13.97421 -13.48750 -13.47617 -12.83536 -12.57213 -12.41906 -11.99187 -11.92172 -11.79261 -11.57658 -11.53484 -11.34653 -11.26227 -11.09402 -11.03618 -10.94407 -10.71559 -10.63838 -10.46013 -10.04172 -9.77280 -9.22135 -8.76991 -8.68682 -8.41868 -7.20590 -6.01696 -4.02423 0.52851 0.99753 1.13073 1.96467 2.07515 2.17709 3.32961 3.39497 3.43777 3.47268 3.59226 4.00534 4.44504 4.73673 4.87063 5.03187 5.08599 5.21851 5.22986 5.28586 5.34323 5.48057 5.70862 5.81593 5.86365 6.02525 6.08406 6.10006 6.14574 6.18197 6.24972 6.45298 6.59353 6.65799 6.74505 6.95441 7.29843 7.43927 7.81277 7.93363 8.08160 8.18133 8.54302 9.05652 9.61786 11.08907 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.012815 B = 0.003450 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.485441 B = 8112.900418 C = 9642.382224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.057 3.943 3 N -0.528 5.528 4 C 0.188 3.812 5 C -0.504 4.504 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.083 3.917 14 C -0.047 4.047 15 C -0.067 4.067 16 C -0.038 4.038 17 Cl -0.069 7.069 18 C -0.080 4.080 19 C -0.015 4.015 20 C 0.227 3.773 21 N -0.263 5.263 22 N -0.049 5.049 23 N -0.230 5.230 24 H 0.475 0.525 25 N -0.295 5.295 26 C -0.065 4.065 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.005 0.995 33 H 0.026 0.974 34 H 0.261 0.739 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.652 -7.196 21.586 22.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.071 4.071 3 N -0.252 5.252 4 C 0.064 3.936 5 C -0.542 4.542 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.045 4.045 14 C -0.049 4.049 15 C -0.087 4.087 16 C -0.065 4.065 17 Cl -0.040 7.040 18 C -0.101 4.101 19 C -0.018 4.018 20 C -0.053 4.053 21 N -0.136 5.136 22 N -0.044 5.044 23 N -0.075 5.075 24 H 0.329 0.671 25 N -0.147 5.147 26 C -0.086 4.086 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.023 0.977 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.160 0.840 38 H 0.157 0.843 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.726 -7.483 21.581 23.003 hybrid contribution 0.029 -0.456 -0.412 0.615 sum 2.755 -7.938 21.169 22.776 Atomic orbital electron populations 1.22397 0.99218 1.01104 1.02098 1.22019 0.92249 0.91313 1.01509 1.62422 1.59306 1.02044 1.01419 1.19815 0.94678 0.93566 0.85561 1.21130 1.22908 1.20334 0.89874 0.91911 1.24961 0.95265 0.95234 0.99069 1.69948 1.32027 1.28364 1.23537 0.86540 0.79820 0.78770 0.82558 1.20796 1.21335 1.19782 1.21112 0.96777 0.98191 0.88444 1.19886 0.93967 0.94964 0.96034 1.21190 0.93986 0.99748 0.93754 1.20648 0.89076 0.98421 0.98339 1.98368 1.27387 1.87533 1.90712 1.20857 0.93934 0.95365 0.99992 1.16953 0.94515 0.93826 0.96525 1.23583 0.90690 0.98289 0.92691 1.76142 1.14954 1.04571 1.17891 1.78937 1.11161 1.15048 0.99301 1.47721 1.10549 1.24438 1.24816 0.67121 1.74923 1.19054 1.04282 1.16445 1.21264 1.00369 0.94359 0.92595 0.93635 0.91119 0.93300 0.90067 0.92830 0.97685 0.95611 0.92972 0.93689 0.89995 0.84042 0.84332 0.84146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.33 9.15 37.16 0.34 -2.99 16 2 C 0.06 1.08 5.51 -3.82 -0.02 1.06 16 3 N -0.53 -10.65 4.69 -237.52 -1.11 -11.76 16 4 C 0.19 4.63 4.49 -4.98 -0.02 4.61 16 5 C -0.50 -13.69 8.41 -34.44 -0.29 -13.98 16 6 H 0.06 1.71 7.30 -52.49 -0.38 1.33 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 9 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 13 C 0.08 1.36 4.93 -4.98 -0.02 1.34 16 14 C -0.05 -0.68 4.89 -104.68 -0.51 -1.19 16 15 C -0.07 -0.89 9.47 -39.49 -0.37 -1.26 16 16 C -0.04 -0.47 6.31 -39.54 -0.25 -0.72 16 17 Cl -0.07 -0.78 28.95 -51.86 -1.50 -2.28 16 18 C -0.08 -0.95 9.48 -39.22 -0.37 -1.32 16 19 C -0.01 -0.18 5.88 -104.90 -0.62 -0.80 16 20 C 0.23 2.83 7.94 -156.30 -1.24 1.59 16 21 N -0.26 -3.45 12.23 32.16 0.39 -3.06 16 22 N -0.05 -0.53 13.47 60.35 0.81 0.28 16 23 N -0.23 -1.78 7.90 60.35 0.48 -1.31 16 24 H 0.47 1.25 8.96 -340.37 -3.05 -1.80 16 25 N -0.30 -3.07 12.08 32.17 0.39 -2.68 16 26 C -0.07 -0.88 7.56 -39.26 -0.30 -1.18 16 27 H 0.04 0.73 5.71 -51.93 -0.30 0.43 16 28 H 0.07 1.44 6.36 -51.93 -0.33 1.11 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.69 6.94 -51.93 -0.36 1.33 16 31 H 0.05 0.91 5.92 -51.93 -0.31 0.61 16 32 H 0.01 0.14 6.04 -51.93 -0.31 -0.17 16 33 H 0.03 0.68 7.93 -51.93 -0.41 0.26 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.05 0.73 6.03 -51.93 -0.31 0.41 16 36 H 0.08 1.32 7.87 -51.93 -0.41 0.91 16 37 H 0.14 1.82 8.06 -52.48 -0.42 1.40 16 38 H 0.14 1.44 7.88 -52.49 -0.41 1.03 16 39 H 0.14 1.92 7.13 -52.49 -0.37 1.55 16 LS Contribution 341.53 15.07 5.15 5.15 Total: -1.00 -30.80 341.53 -10.40 -41.20 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -6.94 Total: -3.16 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -3.78 Total: -13.40 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 1.69 Total: -43.90 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.80 -10.40 -41.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604290709.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.155 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds