Wall clock time and date at job start Sat Apr 11 2020 00:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46904 * 109.46772 * 2 1 4 4 C 1.46901 * 111.00049 * 299.45122 * 3 2 1 5 5 C 1.50700 * 109.47366 * 293.97218 * 4 3 2 6 6 H 1.07999 * 119.99983 * 355.07652 * 5 4 3 7 7 C 1.37874 * 119.99871 * 175.07639 * 5 4 3 8 8 N 1.31513 * 120.00424 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99727 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47334 * 90.00121 * 9 7 5 11 11 H 1.48502 * 109.46776 * 209.99923 * 9 7 5 12 12 H 1.48497 * 109.47225 * 329.99571 * 9 7 5 13 13 C 1.46893 * 111.00134 * 63.41057 * 3 2 1 14 14 C 1.50701 * 109.47457 * 66.04540 * 13 3 2 15 15 C 1.38309 * 119.93786 * 89.99560 * 14 13 3 16 16 C 1.38413 * 120.22687 * 179.97438 * 15 14 13 17 17 Cl 1.73595 * 119.95570 * 179.74864 * 16 15 14 18 18 C 1.38164 * 120.08885 * 0.03119 * 16 15 14 19 19 C 1.39272 * 119.86577 * 359.97438 * 18 16 15 20 20 C 1.48462 * 120.10486 * 180.02562 * 19 18 16 21 21 N 1.34048 * 126.67093 * 179.67082 * 20 19 18 22 22 N 1.28985 * 107.27189 * 179.83346 * 21 20 19 23 23 N 1.28727 * 108.93932 * 0.42672 * 22 21 20 24 24 H 0.97002 * 125.34077 * 179.70368 * 23 22 21 25 25 N 1.28870 * 109.32024 * 359.73057 * 23 22 21 26 26 C 1.38016 * 119.93053 * 270.02237 * 14 13 3 27 27 H 1.09006 * 109.47222 * 301.29354 * 1 2 3 28 28 H 1.09005 * 109.47332 * 61.29281 * 1 2 3 29 29 H 1.09002 * 109.47386 * 181.28969 * 1 2 3 30 30 H 1.08995 * 109.46954 * 240.00116 * 2 1 3 31 31 H 1.08992 * 109.47384 * 119.99573 * 2 1 3 32 32 H 1.08996 * 109.46826 * 53.97404 * 4 3 2 33 33 H 1.09005 * 109.46987 * 173.97299 * 4 3 2 34 34 H 0.96997 * 120.00319 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47316 * 306.04011 * 13 3 2 36 36 H 1.09005 * 109.47586 * 186.04236 * 13 3 2 37 37 H 1.08005 * 119.88798 * 0.02758 * 15 14 13 38 38 H 1.08001 * 120.06668 * 179.97438 * 18 16 15 39 39 H 1.08001 * 120.04650 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5593 2.1061 -1.1942 5 6 2.1922 1.5018 -2.4211 6 1 2.9288 0.7187 -2.3186 7 6 1.8308 1.9486 -3.6744 8 7 0.9341 2.9025 -3.7992 9 14 2.6148 1.1989 -5.1952 10 1 1.8064 0.0386 -5.6480 11 1 2.6698 2.2158 -6.2760 12 1 3.9915 0.7467 -4.8705 13 6 1.6163 2.0860 1.2263 14 6 2.3064 1.4618 2.4118 15 6 3.5392 1.9364 2.8215 16 6 4.1781 1.3679 3.9098 17 17 5.7283 1.9648 4.4140 18 6 3.5863 0.3222 4.5919 19 6 2.3450 -0.1587 4.1826 20 6 1.7041 -1.2817 4.9120 21 7 0.5171 -1.8409 4.6375 22 7 0.3287 -2.7820 5.4992 23 7 1.3374 -2.8254 6.2978 24 1 1.4402 -3.4428 7.0388 25 7 2.1888 -1.9193 5.9589 26 6 1.7070 0.4174 3.0862 27 1 -0.3634 0.5338 0.8782 28 1 -0.3634 0.4936 -0.9014 29 1 -0.3634 -1.0274 0.0231 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8899 32 1 0.4746 2.0291 -1.2695 33 1 1.8446 3.1554 -1.1176 34 1 0.6801 3.2171 -4.6809 35 1 0.5364 2.0072 1.3515 36 1 1.8979 3.1365 1.1538 37 1 4.0046 2.7539 2.2909 38 1 4.0853 -0.1213 5.4409 39 1 0.7444 0.0479 2.7650 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604290709.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:01 Heat of formation + Delta-G solvation = 126.243348 kcal Electronic energy + Delta-G solvation = -24012.250892 eV Core-core repulsion = 20403.977920 eV Total energy + Delta-G solvation = -3608.272971 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.48684 -40.81896 -38.66337 -37.43900 -35.46668 -34.93208 -34.51864 -32.64745 -31.68406 -30.91859 -28.93813 -26.44959 -25.72531 -25.52351 -24.89834 -23.13592 -22.36116 -20.83261 -20.13325 -18.34102 -18.16105 -17.80043 -17.05110 -16.88326 -16.73718 -16.24286 -15.87656 -15.45135 -14.94902 -14.89102 -14.60591 -14.33404 -14.01678 -13.45383 -13.43115 -13.08934 -13.00954 -12.91940 -12.82799 -12.66172 -12.56531 -12.41241 -12.37557 -12.29655 -12.14318 -11.95527 -11.74385 -11.68390 -11.44760 -11.19813 -10.55050 -9.82326 -9.67363 -8.86543 -8.14181 -6.22279 -0.40543 0.10670 0.15294 1.06277 1.22021 1.41693 1.43526 1.44164 1.55470 2.43347 2.55934 2.60041 3.11789 3.18916 3.52098 3.72387 3.90299 4.02822 4.13411 4.20203 4.30416 4.34587 4.42085 4.53258 4.60824 4.72317 4.76996 4.81935 5.01266 5.07166 5.11101 5.19284 5.29373 5.43687 5.47612 5.56902 5.60055 5.62232 5.73339 6.13660 6.40151 6.69935 6.94324 7.09556 7.46634 8.96028 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.012815 B = 0.003450 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.485441 B = 8112.900418 C = 9642.382224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.061 3.939 3 N -0.535 5.535 4 C 0.204 3.796 5 C -0.515 4.515 6 H 0.058 0.942 7 C 0.005 3.995 8 N -0.933 5.933 9 Si 0.960 3.040 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.086 3.914 14 C -0.056 4.056 15 C -0.072 4.072 16 C -0.038 4.038 17 Cl -0.058 7.058 18 C -0.070 4.070 19 C -0.013 4.013 20 C 0.213 3.787 21 N -0.291 5.291 22 N -0.055 5.055 23 N -0.198 5.198 24 H 0.495 0.505 25 N -0.289 5.289 26 C -0.067 4.067 27 H 0.060 0.940 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.076 0.924 32 H -0.015 1.015 33 H 0.003 0.997 34 H 0.262 0.738 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.142 0.858 38 H 0.156 0.844 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.624 -8.729 23.282 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.067 4.067 3 N -0.258 5.258 4 C 0.078 3.922 5 C -0.554 4.554 6 H 0.076 0.924 7 C -0.193 4.193 8 N -0.574 5.574 9 Si 0.786 3.214 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.191 1.191 13 C -0.041 4.041 14 C -0.057 4.057 15 C -0.092 4.092 16 C -0.064 4.064 17 Cl -0.029 7.029 18 C -0.091 4.091 19 C -0.017 4.017 20 C -0.067 4.067 21 N -0.163 5.163 22 N -0.050 5.050 23 N -0.049 5.049 24 H 0.355 0.645 25 N -0.142 5.142 26 C -0.087 4.087 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.002 0.998 33 H 0.021 0.979 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.160 0.840 38 H 0.174 0.826 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.696 -9.042 23.311 25.275 hybrid contribution -0.240 -0.040 -0.750 0.788 sum 3.456 -9.082 22.561 24.565 Atomic orbital electron populations 1.22274 0.98297 1.02149 1.01047 1.21972 0.92970 0.90388 1.01335 1.62278 1.59610 1.02588 1.01362 1.19445 0.93121 0.92586 0.87064 1.21428 1.22719 1.20092 0.91138 0.92359 1.25781 0.95755 0.95634 1.02146 1.70065 1.33359 1.29684 1.24267 0.85518 0.79094 0.78038 0.78796 1.20103 1.20949 1.19132 1.21075 0.97308 0.98058 0.87700 1.19573 0.94560 0.95868 0.95704 1.21210 0.93761 0.99924 0.94256 1.20644 0.89466 0.98375 0.97948 1.98375 1.26555 1.87434 1.90522 1.21025 0.93420 0.94652 0.99954 1.16976 0.94673 0.93863 0.96172 1.23524 0.90905 0.98787 0.93483 1.76127 1.15636 1.05504 1.19073 1.78885 1.11778 1.14770 0.99547 1.47791 1.09173 1.23540 1.24371 0.64532 1.74883 1.19194 1.04356 1.15719 1.21195 1.00327 0.94193 0.93025 0.92092 0.94508 0.91306 0.92442 0.90618 0.99780 0.97932 0.92874 0.93372 0.90129 0.84023 0.82587 0.84423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.32 9.15 71.98 0.66 -5.66 16 2 C 0.06 2.31 5.51 86.30 0.48 2.79 16 3 N -0.53 -21.95 4.69 -905.39 -4.25 -26.20 16 4 C 0.20 10.40 4.49 85.56 0.38 10.78 16 5 C -0.52 -28.65 8.41 25.60 0.22 -28.44 16 6 H 0.06 3.23 7.30 -2.91 -0.02 3.21 16 7 C 0.00 0.26 5.46 84.65 0.46 0.73 16 8 N -0.93 -55.40 13.29 21.45 0.28 -55.12 16 9 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 C 0.09 2.86 4.93 85.56 0.42 3.28 16 14 C -0.06 -1.56 4.89 -19.90 -0.10 -1.66 16 15 C -0.07 -1.84 9.47 22.33 0.21 -1.63 16 16 C -0.04 -0.86 6.31 22.29 0.14 -0.72 16 17 Cl -0.06 -1.20 28.95 -2.72 -0.08 -1.28 16 18 C -0.07 -1.48 9.48 22.50 0.21 -1.27 16 19 C -0.01 -0.31 5.88 -20.04 -0.12 -0.43 16 20 C 0.21 4.86 7.94 137.38 1.09 5.95 16 21 N -0.29 -7.18 12.23 -52.18 -0.64 -7.81 16 22 N -0.05 -1.07 13.47 37.02 0.50 -0.57 16 23 N -0.20 -2.53 7.90 37.02 0.29 -2.24 16 24 H 0.50 1.07 8.96 -347.54 -3.12 -2.05 16 25 N -0.29 -5.21 12.08 -52.13 -0.63 -5.84 16 26 C -0.07 -1.73 7.56 22.48 0.17 -1.56 16 27 H 0.06 1.93 5.71 -2.38 -0.01 1.92 16 28 H 0.04 1.54 6.36 -2.38 -0.02 1.52 16 29 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 2.42 6.94 -2.39 -0.02 2.41 16 31 H 0.08 2.52 5.92 -2.39 -0.01 2.51 16 32 H -0.02 -0.85 6.04 -2.39 -0.01 -0.86 16 33 H 0.00 0.14 7.93 -2.38 -0.02 0.12 16 34 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 35 H 0.05 1.56 6.03 -2.39 -0.01 1.55 16 36 H 0.08 2.66 7.87 -2.38 -0.02 2.64 16 37 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 38 H 0.16 2.76 7.88 -2.91 -0.02 2.74 16 39 H 0.14 3.62 7.13 -2.91 -0.02 3.60 16 Total: -1.00 -66.36 341.53 -0.26 -66.63 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -2.00 Total: 3.95 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 4.23 Total: -17.82 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -4.44 Total: -97.78 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -66.36 -0.26 -66.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604290709.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.873 kcal (2) G-P(sol) polarization free energy of solvation -66.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds