Wall clock time and date at job start Sat Apr 11 2020 00:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46789 * 2 1 4 4 S 1.81000 * 109.47260 * 120.00564 * 2 1 3 5 5 C 1.76204 * 99.99786 * 294.99545 * 4 2 1 6 6 N 1.32389 * 126.25914 * 0.03042 * 5 4 2 7 7 N 1.28516 * 110.20242 * 179.97438 * 6 5 4 8 8 C 1.33098 * 109.74574 * 359.97438 * 7 6 5 9 9 C 1.39776 * 126.56257 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99778 * 186.09356 * 9 8 7 11 11 C 1.40085 * 120.00068 * 6.08606 * 9 8 7 12 12 N 1.30808 * 119.99942 * 184.12744 * 11 9 8 13 13 Si 1.86799 * 119.99669 * 4.13543 * 11 9 8 14 14 H 1.48509 * 109.46950 * 179.97438 * 13 11 9 15 15 H 1.48495 * 109.47355 * 299.99259 * 13 11 9 16 16 H 1.48501 * 109.47215 * 59.99928 * 13 11 9 17 17 N 1.36671 * 126.25846 * 180.29350 * 5 4 2 18 18 C 1.46504 * 127.15199 * 0.04162 * 17 5 4 19 19 C 1.50703 * 109.46654 * 240.00071 * 2 1 3 20 20 N 1.31069 * 126.66206 * 285.02640 * 19 2 1 21 21 N 1.28846 * 107.99084 * 179.97438 * 20 19 2 22 22 N 1.28737 * 109.39480 * 359.97438 * 21 20 19 23 23 N 1.29021 * 108.80975 * 359.74952 * 22 21 20 24 24 C 1.46503 * 126.43514 * 180.24319 * 23 22 21 25 25 C 1.52999 * 117.50078 * 8.93227 * 24 23 22 26 26 C 1.52993 * 117.50313 * 300.26481 * 24 23 22 27 27 H 1.09002 * 109.46629 * 299.99597 * 1 2 3 28 28 H 1.08998 * 109.47344 * 59.99573 * 1 2 3 29 29 H 1.09003 * 109.47104 * 180.02562 * 1 2 3 30 30 H 0.97000 * 120.00392 * 354.84969 * 12 11 9 31 31 H 1.09000 * 109.46642 * 270.17152 * 18 17 5 32 32 H 1.08991 * 109.47275 * 30.17219 * 18 17 5 33 33 H 1.08996 * 109.46979 * 150.17779 * 18 17 5 34 34 H 1.09007 * 115.54473 * 154.59535 * 24 23 22 35 35 H 1.08993 * 117.50075 * 359.97438 * 25 24 23 36 36 H 1.08994 * 117.49984 * 145.01809 * 25 24 23 37 37 H 1.08998 * 117.49925 * 214.98045 * 26 24 23 38 38 H 1.09000 * 117.50073 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1334 -0.8534 1.4778 5 6 1.5441 0.2421 2.7257 6 7 0.8574 1.3567 2.5286 7 7 0.5854 1.9153 3.6536 8 6 1.0844 1.1869 4.6495 9 6 0.9926 1.4699 6.0153 10 1 1.5214 0.8573 6.7304 11 6 0.2147 2.5482 6.4564 12 7 0.1929 2.8628 7.7259 13 14 -0.7914 3.5367 5.2316 14 1 -1.5209 4.6150 5.9462 15 1 0.1129 4.1375 4.2186 16 1 -1.7668 2.6431 4.5567 17 7 1.7166 0.0992 4.0739 18 6 2.4214 -0.9828 4.7660 19 6 2.0323 -0.7104 -1.2305 20 7 2.0361 -2.0042 -1.4405 21 7 2.5432 -2.2167 -2.6057 22 7 2.8625 -1.0921 -3.1447 23 7 2.5578 -0.1391 -2.3301 24 6 2.7514 1.2952 -2.5575 25 6 3.1771 1.7372 -3.9590 26 6 4.1798 1.7851 -2.8033 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 0.6547 2.3056 8.3717 31 1 1.7211 -1.7874 4.9902 32 1 3.2194 -1.3628 4.1283 33 1 2.8478 -0.6031 5.6944 34 1 2.0818 1.9535 -2.0039 35 1 3.3135 0.9608 -4.7118 36 1 2.7880 2.6863 -4.3273 37 1 4.4498 2.7658 -2.4118 38 1 4.9756 1.0404 -2.7954 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649782306.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:06 Heat of formation + Delta-G solvation = 207.712884 kcal Electronic energy + Delta-G solvation = -24225.426221 eV Core-core repulsion = 20655.022491 eV Total energy + Delta-G solvation = -3570.403730 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.107 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.35952 -41.05818 -38.25579 -35.08738 -34.00574 -33.87435 -33.64626 -31.06774 -29.98676 -26.83639 -25.65543 -25.37715 -24.94840 -23.11918 -22.47482 -21.64576 -21.30105 -20.29042 -18.30499 -18.13386 -17.35509 -16.97126 -15.72154 -15.55463 -15.28627 -15.15671 -14.63938 -13.86462 -13.83197 -13.62638 -13.30435 -13.18783 -12.86563 -12.74407 -12.56353 -12.32702 -12.16966 -12.14861 -11.94602 -11.74517 -11.37537 -11.15333 -11.10408 -10.94363 -10.63389 -10.42653 -10.05679 -9.93362 -9.66748 -9.47892 -9.22257 -8.78570 -8.50405 -7.51376 -7.24302 -4.94015 0.83575 1.38122 1.78635 2.12141 2.35946 2.78872 3.01849 3.48574 3.50319 3.54581 3.76922 3.79643 3.96007 4.04120 4.08247 4.20548 4.31958 4.32422 4.81701 4.88010 5.01782 5.03036 5.11316 5.23800 5.31142 5.35566 5.48376 5.55405 5.62738 5.66815 5.85844 5.87581 5.96702 6.21540 6.32846 6.58361 7.01505 7.31136 7.41514 7.95722 8.24632 8.44767 8.46035 9.86694 9.98490 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.020367 B = 0.003536 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.444075 B = 7916.097906 C = 8612.487252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.008 3.992 3 H 0.121 0.879 4 S 0.020 5.980 5 C 0.056 3.944 6 N -0.269 5.269 7 N -0.415 5.415 8 C 0.347 3.653 9 C -0.490 4.490 10 H 0.084 0.916 11 C 0.064 3.936 12 N -0.805 5.805 13 Si 1.113 2.887 14 H -0.311 1.311 15 H -0.260 1.260 16 H -0.280 1.280 17 N -0.510 5.510 18 C 0.100 3.900 19 C 0.211 3.789 20 N -0.285 5.285 21 N -0.075 5.075 22 N -0.097 5.097 23 N -0.272 5.272 24 C 0.043 3.957 25 C -0.152 4.152 26 C -0.161 4.161 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.284 0.716 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.164 0.836 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.712 -1.862 -15.804 16.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 H 0.139 0.861 4 S 0.246 5.754 5 C -0.317 4.317 6 N -0.113 5.113 7 N -0.265 5.265 8 C 0.105 3.895 9 C -0.531 4.531 10 H 0.102 0.898 11 C -0.159 4.159 12 N -0.428 5.428 13 Si 0.941 3.059 14 H -0.241 1.241 15 H -0.186 1.186 16 H -0.206 1.206 17 N -0.211 5.211 18 C -0.044 4.044 19 C -0.068 4.068 20 N -0.135 5.135 21 N -0.068 5.068 22 N -0.082 5.082 23 N -0.073 5.073 24 C -0.060 4.060 25 C -0.190 4.190 26 C -0.199 4.199 27 H 0.122 0.878 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.181 0.819 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.961 -1.695 -17.288 18.065 hybrid contribution 1.103 -0.627 1.525 1.983 sum 6.064 -2.323 -15.763 17.048 Atomic orbital electron populations 1.22169 0.89430 1.04132 1.04751 1.21434 1.01233 1.01021 0.88789 0.86124 1.85138 1.70247 1.28020 0.92012 1.25446 1.14944 1.04212 0.87127 1.74153 1.12418 1.03556 1.21172 1.73991 1.32669 1.26061 0.93760 1.21691 0.89757 0.82489 0.95573 1.19429 1.29724 1.15924 0.88037 0.89819 1.27378 0.94430 0.95009 0.99103 1.70669 1.34341 1.35242 1.02592 0.82700 0.76150 0.75055 0.71980 1.24097 1.18593 1.20613 1.45792 1.48792 1.22441 1.04070 1.21573 0.96245 0.88883 0.97733 1.25228 0.99493 0.90039 0.92011 1.75114 1.17564 1.10921 1.09870 1.78636 1.11493 1.15158 1.01547 1.78793 1.19218 0.92158 1.18054 1.47811 1.39497 1.08723 1.11289 1.22479 1.02926 0.75235 1.05348 1.23461 1.00980 1.04194 0.90380 1.23566 0.91121 1.04085 1.01176 0.87821 0.92113 0.90891 0.90451 0.91904 0.91156 0.90157 0.81892 0.86548 0.86197 0.85978 0.87389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.99 37.16 0.33 -1.70 16 2 C 0.01 0.11 2.65 -27.88 -0.07 0.04 16 3 H 0.12 1.59 7.23 -51.92 -0.38 1.22 16 4 S 0.02 0.32 21.09 -107.50 -2.27 -1.94 16 5 C 0.06 1.18 7.77 -87.28 -0.68 0.50 16 6 N -0.27 -6.20 9.74 30.89 0.30 -5.90 16 7 N -0.41 -10.71 7.51 31.26 0.23 -10.48 16 8 C 0.35 8.78 7.27 -154.81 -1.13 7.65 16 9 C -0.49 -12.62 9.50 -38.31 -0.36 -12.99 16 10 H 0.08 2.10 7.47 -52.49 -0.39 1.71 16 11 C 0.06 1.66 5.52 -17.29 -0.10 1.56 16 12 N -0.80 -20.94 13.65 55.56 0.76 -20.18 16 13 Si 1.11 26.73 25.90 -169.99 -4.40 22.33 16 14 H -0.31 -7.23 7.11 56.52 0.40 -6.83 16 15 H -0.26 -6.37 6.76 56.52 0.38 -5.99 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 N -0.51 -11.16 3.26 -123.18 -0.40 -11.56 16 18 C 0.10 1.70 10.89 59.85 0.65 2.35 16 19 C 0.21 2.95 6.73 -155.43 -1.05 1.90 16 20 N -0.29 -4.58 12.18 32.70 0.40 -4.18 16 21 N -0.07 -1.20 13.43 60.35 0.81 -0.39 16 22 N -0.10 -1.34 12.69 60.35 0.77 -0.58 16 23 N -0.27 -3.29 3.67 -51.81 -0.19 -3.48 16 24 C 0.04 0.35 6.43 -67.93 -0.44 -0.09 16 25 C -0.15 -0.88 10.16 -26.69 -0.27 -1.15 16 26 C -0.16 -1.01 10.46 -26.69 -0.28 -1.29 16 27 H 0.10 1.74 5.89 -51.93 -0.31 1.44 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.28 7.03 8.72 -40.82 -0.36 6.67 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.03 7.85 -51.93 -0.41 0.63 16 33 H 0.08 1.31 7.48 -51.93 -0.39 0.92 16 34 H 0.16 1.04 7.60 -51.93 -0.39 0.64 16 35 H 0.12 0.79 7.85 -51.93 -0.41 0.38 16 36 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.12 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 339.43 15.07 5.12 5.12 Total: -1.00 -31.56 339.43 -6.64 -38.20 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -4.38 Total: -3.73 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -3.39 Total: -3.22 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: 2.68 Total: -56.75 kcal Atomic # 14 Polarization: 26.73 SS G_CDS: -4.40 Total: 22.33 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -2.27 Total: -1.94 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.56 -6.64 -38.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649782306.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 245.913 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 214.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 207.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds