Wall clock time and date at job start Sat Apr 11 2020 00:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46789 * 2 1 4 4 S 1.81000 * 109.47260 * 120.00564 * 2 1 3 5 5 C 1.76204 * 99.99786 * 294.99545 * 4 2 1 6 6 N 1.32389 * 126.25914 * 0.03042 * 5 4 2 7 7 N 1.28516 * 110.20242 * 179.97438 * 6 5 4 8 8 C 1.33098 * 109.74574 * 359.97438 * 7 6 5 9 9 C 1.39776 * 126.56257 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99778 * 186.09356 * 9 8 7 11 11 C 1.40085 * 120.00068 * 6.08606 * 9 8 7 12 12 N 1.30808 * 119.99942 * 184.12744 * 11 9 8 13 13 Si 1.86799 * 119.99669 * 4.13543 * 11 9 8 14 14 H 1.48509 * 109.46950 * 179.97438 * 13 11 9 15 15 H 1.48495 * 109.47355 * 299.99259 * 13 11 9 16 16 H 1.48501 * 109.47215 * 59.99928 * 13 11 9 17 17 N 1.36671 * 126.25846 * 180.29350 * 5 4 2 18 18 C 1.46504 * 127.15199 * 0.04162 * 17 5 4 19 19 C 1.50703 * 109.46654 * 240.00071 * 2 1 3 20 20 N 1.31069 * 126.66206 * 285.02640 * 19 2 1 21 21 N 1.28846 * 107.99084 * 179.97438 * 20 19 2 22 22 N 1.28737 * 109.39480 * 359.97438 * 21 20 19 23 23 N 1.29021 * 108.80975 * 359.74952 * 22 21 20 24 24 C 1.46503 * 126.43514 * 180.24319 * 23 22 21 25 25 C 1.52999 * 117.50078 * 8.93227 * 24 23 22 26 26 C 1.52993 * 117.50313 * 300.26481 * 24 23 22 27 27 H 1.09002 * 109.46629 * 299.99597 * 1 2 3 28 28 H 1.08998 * 109.47344 * 59.99573 * 1 2 3 29 29 H 1.09003 * 109.47104 * 180.02562 * 1 2 3 30 30 H 0.97000 * 120.00392 * 354.84969 * 12 11 9 31 31 H 1.09000 * 109.46642 * 270.17152 * 18 17 5 32 32 H 1.08991 * 109.47275 * 30.17219 * 18 17 5 33 33 H 1.08996 * 109.46979 * 150.17779 * 18 17 5 34 34 H 1.09007 * 115.54473 * 154.59535 * 24 23 22 35 35 H 1.08993 * 117.50075 * 359.97438 * 25 24 23 36 36 H 1.08994 * 117.49984 * 145.01809 * 25 24 23 37 37 H 1.08998 * 117.49925 * 214.98045 * 26 24 23 38 38 H 1.09000 * 117.50073 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1334 -0.8534 1.4778 5 6 1.5441 0.2421 2.7257 6 7 0.8574 1.3567 2.5286 7 7 0.5854 1.9153 3.6536 8 6 1.0844 1.1869 4.6495 9 6 0.9926 1.4699 6.0153 10 1 1.5214 0.8573 6.7304 11 6 0.2147 2.5482 6.4564 12 7 0.1929 2.8628 7.7259 13 14 -0.7914 3.5367 5.2316 14 1 -1.5209 4.6150 5.9462 15 1 0.1129 4.1375 4.2186 16 1 -1.7668 2.6431 4.5567 17 7 1.7166 0.0992 4.0739 18 6 2.4214 -0.9828 4.7660 19 6 2.0323 -0.7104 -1.2305 20 7 2.0361 -2.0042 -1.4405 21 7 2.5432 -2.2167 -2.6057 22 7 2.8625 -1.0921 -3.1447 23 7 2.5578 -0.1391 -2.3301 24 6 2.7514 1.2952 -2.5575 25 6 3.1771 1.7372 -3.9590 26 6 4.1798 1.7851 -2.8033 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 0.6547 2.3056 8.3717 31 1 1.7211 -1.7874 4.9902 32 1 3.2194 -1.3628 4.1283 33 1 2.8478 -0.6031 5.6944 34 1 2.0818 1.9535 -2.0039 35 1 3.3135 0.9608 -4.7118 36 1 2.7880 2.6863 -4.3273 37 1 4.4498 2.7658 -2.4118 38 1 4.9756 1.0404 -2.7954 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649782306.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:05 Heat of formation + Delta-G solvation = 189.045678 kcal Electronic energy + Delta-G solvation = -24226.235692 eV Core-core repulsion = 20655.022491 eV Total energy + Delta-G solvation = -3571.213201 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.107 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.43433 -42.84621 -38.91670 -36.27490 -35.86675 -35.32740 -34.81005 -32.35560 -31.66746 -28.41625 -27.24217 -26.52878 -26.04896 -23.75506 -23.39499 -23.30353 -22.44398 -21.92706 -20.17434 -19.01869 -18.61185 -18.17539 -17.15144 -16.88616 -16.45995 -16.25430 -16.11483 -15.64855 -15.15499 -14.81838 -14.53891 -14.51163 -14.28097 -14.17545 -13.66360 -13.54826 -13.36011 -13.22424 -13.07391 -12.81729 -12.79340 -12.62030 -12.36128 -11.92784 -11.75361 -11.73328 -11.52169 -11.45795 -11.32670 -11.00312 -10.90217 -10.55382 -10.34743 -9.47021 -8.78543 -6.84589 -0.30441 0.21467 0.76920 0.82356 0.99133 1.10822 1.58136 1.62547 1.97435 2.14353 2.21689 2.42944 2.45685 2.47671 3.05847 3.06775 3.33557 3.57173 3.68419 3.73074 3.92975 3.93877 4.12788 4.32234 4.34083 4.46864 4.56205 4.57455 4.61979 4.64934 4.66307 4.75245 4.89476 5.04590 5.09098 5.17995 5.25416 5.38945 5.69684 6.02201 6.40725 6.57801 7.34224 7.94338 8.15196 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.020367 B = 0.003536 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.444075 B = 7916.097906 C = 8612.487252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.015 3.985 3 H 0.135 0.865 4 S 0.045 5.955 5 C 0.075 3.925 6 N -0.291 5.291 7 N -0.441 5.441 8 C 0.329 3.671 9 C -0.509 4.509 10 H 0.081 0.919 11 C 0.041 3.959 12 N -0.825 5.825 13 Si 1.145 2.855 14 H -0.302 1.302 15 H -0.270 1.270 16 H -0.291 1.291 17 N -0.513 5.513 18 C 0.091 3.909 19 C 0.207 3.793 20 N -0.308 5.308 21 N -0.101 5.101 22 N -0.093 5.093 23 N -0.257 5.257 24 C 0.010 3.990 25 C -0.136 4.136 26 C -0.154 4.154 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.285 0.715 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.183 0.817 35 H 0.106 0.894 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.500 -1.658 -17.781 19.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.153 0.847 4 S 0.271 5.729 5 C -0.300 4.300 6 N -0.134 5.134 7 N -0.290 5.290 8 C 0.083 3.917 9 C -0.550 4.550 10 H 0.099 0.901 11 C -0.179 4.179 12 N -0.450 5.450 13 Si 0.974 3.026 14 H -0.231 1.231 15 H -0.196 1.196 16 H -0.218 1.218 17 N -0.213 5.213 18 C -0.051 4.051 19 C -0.072 4.072 20 N -0.158 5.158 21 N -0.094 5.094 22 N -0.078 5.078 23 N -0.058 5.058 24 C -0.092 4.092 25 C -0.173 4.173 26 C -0.192 4.192 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.200 0.800 35 H 0.124 0.876 36 H 0.167 0.833 37 H 0.163 0.837 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.762 -1.492 -19.263 20.161 hybrid contribution 0.982 -0.807 1.868 2.260 sum 6.745 -2.299 -17.395 18.798 Atomic orbital electron populations 1.22072 0.89222 1.03929 1.04742 1.21462 1.01343 1.01387 0.87625 0.84704 1.85172 1.69480 1.26684 0.91572 1.26286 1.12115 1.03635 0.87953 1.74120 1.14184 1.04803 1.20257 1.73889 1.33309 1.27169 0.94656 1.21723 0.90777 0.83725 0.95491 1.19416 1.30643 1.16484 0.88480 0.90073 1.27852 0.94857 0.95633 0.99559 1.70671 1.35610 1.35921 1.02785 0.82225 0.75143 0.74429 0.70845 1.23112 1.19626 1.21848 1.46137 1.47997 1.22511 1.04613 1.21906 0.97053 0.87948 0.98201 1.24974 1.00184 0.89635 0.92372 1.75031 1.18213 1.12244 1.10296 1.78620 1.12807 1.16141 1.01876 1.78727 1.18766 0.92198 1.18138 1.48098 1.37654 1.09940 1.10138 1.23146 1.04940 0.73160 1.07905 1.23594 0.99752 1.04922 0.89070 1.23673 0.89725 1.04604 1.01179 0.90353 0.89494 0.91202 0.90345 0.90336 0.88548 0.89765 0.79986 0.87574 0.83285 0.83686 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 8.99 71.98 0.65 -3.01 16 2 C 0.01 0.38 2.65 29.85 0.08 0.46 16 3 H 0.14 3.18 7.23 -2.40 -0.02 3.16 16 4 S 0.04 1.39 21.09 -56.49 -1.19 0.20 16 5 C 0.08 3.02 7.77 179.18 1.39 4.41 16 6 N -0.29 -13.14 9.74 -56.17 -0.55 -13.69 16 7 N -0.44 -22.72 7.51 -55.02 -0.41 -23.13 16 8 C 0.33 16.59 7.27 133.23 0.97 17.55 16 9 C -0.51 -26.46 9.50 23.09 0.22 -26.24 16 10 H 0.08 4.12 7.47 -2.91 -0.02 4.10 16 11 C 0.04 2.14 5.52 85.29 0.47 2.61 16 12 N -0.82 -43.33 13.65 21.86 0.30 -43.03 16 13 Si 1.15 55.02 25.90 68.60 1.78 56.79 16 14 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 15 H -0.27 -13.25 6.76 99.48 0.67 -12.58 16 16 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 17 N -0.51 -21.82 3.26 -543.63 -1.77 -23.59 16 18 C 0.09 2.92 10.89 127.77 1.39 4.31 16 19 C 0.21 5.36 6.73 138.14 0.93 6.29 16 20 N -0.31 -9.46 12.18 -50.45 -0.61 -10.07 16 21 N -0.10 -3.13 13.43 37.01 0.50 -2.63 16 22 N -0.09 -2.42 12.69 37.02 0.47 -1.95 16 23 N -0.26 -5.64 3.67 -317.82 -1.17 -6.80 16 24 C 0.01 0.13 6.43 44.99 0.29 0.42 16 25 C -0.14 -1.13 10.16 30.62 0.31 -0.82 16 26 C -0.15 -1.46 10.46 30.62 0.32 -1.14 16 27 H 0.08 2.53 5.89 -2.39 -0.01 2.51 16 28 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.29 14.32 8.72 -92.71 -0.81 13.51 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.10 2.57 7.85 -2.39 -0.02 2.55 16 33 H 0.08 2.64 7.48 -2.39 -0.02 2.62 16 34 H 0.18 1.65 7.60 -2.38 -0.02 1.63 16 35 H 0.11 1.16 7.85 -2.39 -0.02 1.15 16 36 H 0.15 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.15 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -68.32 339.43 5.39 -62.93 By element: Atomic # 1 Polarization: -0.92 SS G_CDS: 1.03 Total: 0.12 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 7.02 Total: 4.86 kcal Atomic # 7 Polarization: -121.65 SS G_CDS: -3.25 Total: -124.90 kcal Atomic # 14 Polarization: 55.02 SS G_CDS: 1.78 Total: 56.79 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -1.19 Total: 0.20 kcal Total: -68.32 5.39 -62.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649782306.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 251.971 kcal (2) G-P(sol) polarization free energy of solvation -68.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 183.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 189.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds