Wall clock time and date at job start Sat Apr 11 2020 00:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46813 * 2 1 4 4 S 1.81000 * 109.47240 * 239.99720 * 2 1 3 5 5 C 1.76201 * 99.99865 * 65.00012 * 4 2 1 6 6 N 1.32383 * 126.26198 * 359.68801 * 5 4 2 7 7 N 1.28511 * 110.20824 * 179.81537 * 6 5 4 8 8 C 1.33100 * 109.74102 * 0.45637 * 7 6 5 9 9 C 1.39777 * 126.56627 * 179.74557 * 8 7 6 10 10 H 1.07993 * 120.00684 * 174.26806 * 9 8 7 11 11 C 1.40091 * 119.99765 * 354.26589 * 9 8 7 12 12 N 1.30811 * 119.99591 * 6.03186 * 11 9 8 13 13 Si 1.86796 * 119.99893 * 186.03749 * 11 9 8 14 14 H 1.48496 * 109.47209 * 94.98263 * 13 11 9 15 15 H 1.48506 * 109.46821 * 214.98220 * 13 11 9 16 16 H 1.48503 * 109.46993 * 334.97686 * 13 11 9 17 17 N 1.36671 * 126.25707 * 179.97438 * 5 4 2 18 18 C 1.46503 * 127.15196 * 359.97057 * 17 5 4 19 19 C 1.50701 * 109.47096 * 119.99730 * 2 1 3 20 20 N 1.31066 * 126.66357 * 74.68907 * 19 2 1 21 21 N 1.28842 * 107.99262 * 179.89614 * 20 19 2 22 22 N 1.28733 * 109.39690 * 0.37831 * 21 20 19 23 23 N 1.29024 * 108.80750 * 359.76210 * 22 21 20 24 24 C 1.46498 * 126.43292 * 180.02562 * 23 22 21 25 25 C 1.52996 * 117.50508 * 8.72619 * 24 23 22 26 26 C 1.53002 * 117.50354 * 300.06448 * 24 23 22 27 27 H 1.08999 * 109.47160 * 60.00624 * 1 2 3 28 28 H 1.09004 * 109.46813 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47369 * 300.00222 * 1 2 3 30 30 H 0.97007 * 119.99905 * 180.02562 * 12 11 9 31 31 H 1.08996 * 109.47349 * 90.02188 * 18 17 5 32 32 H 1.09001 * 109.47313 * 210.02373 * 18 17 5 33 33 H 1.09004 * 109.46857 * 330.01636 * 18 17 5 34 34 H 1.09000 * 115.54691 * 154.39771 * 24 23 22 35 35 H 1.09003 * 117.49905 * 0.02562 * 25 24 23 36 36 H 1.08996 * 117.50041 * 145.01699 * 25 24 23 37 37 H 1.08998 * 117.49943 * 214.98845 * 26 24 23 38 38 H 1.09001 * 117.49459 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1334 -0.8533 -1.4778 5 6 1.5440 0.2422 -2.7257 6 7 0.8528 1.3539 -2.5289 7 7 0.5859 1.9157 -3.6535 8 6 1.0852 1.1875 -4.6494 9 6 0.9945 1.4712 -6.0151 10 1 1.5186 0.8551 -6.7307 11 6 0.2234 2.5546 -6.4557 12 7 -0.3149 3.3706 -5.5865 13 14 -0.0359 2.8340 -8.2844 14 1 -1.3158 2.2088 -8.7040 15 1 -0.0835 4.2924 -8.5604 16 1 1.0855 2.2231 -9.0424 17 7 1.7120 0.0966 -4.0742 18 6 2.4111 -0.9889 -4.7666 19 6 2.0323 -0.7104 1.2305 20 7 2.0315 -2.0037 1.4427 21 7 2.5430 -2.2166 2.6059 22 7 2.8629 -1.0919 3.1445 23 7 2.5637 -0.1393 2.3274 24 6 2.7649 1.2944 2.5514 25 6 3.5721 1.7107 3.7826 26 6 2.0573 1.9283 3.7508 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.8491 4.1207 -5.8915 31 1 1.7068 -1.7900 -4.9906 32 1 2.8392 -0.6113 -5.6952 33 1 3.2076 -1.3729 -4.1291 34 1 2.8708 1.9004 1.6516 35 1 3.9539 0.9179 4.4258 36 1 4.2088 2.5908 3.6929 37 1 1.6980 2.9514 3.6401 38 1 1.4416 1.2786 4.3729 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649782307.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:09 Heat of formation + Delta-G solvation = 200.380667 kcal Electronic energy + Delta-G solvation = -24080.709426 eV Core-core repulsion = 20509.987748 eV Total energy + Delta-G solvation = -3570.721679 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.107 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.42570 -42.44902 -38.91506 -36.21250 -35.57756 -35.07928 -34.80333 -32.16790 -31.14808 -28.22438 -27.39712 -26.50193 -26.05838 -23.81869 -23.31593 -22.79578 -22.56605 -21.97822 -19.28443 -19.00563 -18.27805 -18.10359 -17.28278 -16.63315 -16.46429 -16.18794 -16.12734 -15.68442 -15.00400 -14.70106 -14.50649 -14.22510 -13.96652 -13.80984 -13.58647 -13.37076 -13.29452 -13.04323 -13.00823 -12.85103 -12.71054 -12.61209 -12.35713 -11.95779 -11.75553 -11.73438 -11.64853 -11.47612 -11.40863 -10.96718 -10.57334 -10.35095 -10.27516 -8.61168 -8.53486 -6.55832 -0.24505 0.27342 0.82080 0.88588 1.15216 1.20696 1.44550 1.60151 1.62400 2.20028 2.44788 2.46085 2.49252 2.51330 3.08061 3.32979 3.35129 3.54909 3.68338 3.76538 3.95569 4.08695 4.13931 4.33011 4.46421 4.57022 4.61683 4.64109 4.66079 4.73389 4.87580 4.89191 4.95225 5.04919 5.09182 5.21281 5.35829 5.58520 6.04604 6.24283 6.78083 6.92928 7.35009 8.41909 8.64814 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.023560 B = 0.003137 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.157753 B = 8922.337079 C = 9653.567272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.020 3.980 3 H 0.128 0.872 4 S 0.032 5.968 5 C 0.049 3.951 6 N -0.310 5.310 7 N -0.382 5.382 8 C 0.321 3.679 9 C -0.472 4.472 10 H 0.101 0.899 11 C 0.033 3.967 12 N -0.783 5.783 13 Si 1.002 2.998 14 H -0.265 1.265 15 H -0.270 1.270 16 H -0.249 1.249 17 N -0.520 5.520 18 C 0.092 3.908 19 C 0.208 3.792 20 N -0.307 5.307 21 N -0.101 5.101 22 N -0.093 5.093 23 N -0.257 5.257 24 C 0.008 3.992 25 C -0.138 4.138 26 C -0.147 4.147 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.285 0.715 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.176 0.824 35 H 0.107 0.893 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.030 -1.154 11.016 12.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 H 0.146 0.854 4 S 0.258 5.742 5 C -0.325 4.325 6 N -0.155 5.155 7 N -0.229 5.229 8 C 0.075 3.925 9 C -0.512 4.512 10 H 0.119 0.881 11 C -0.188 4.188 12 N -0.408 5.408 13 Si 0.821 3.179 14 H -0.190 1.190 15 H -0.195 1.195 16 H -0.172 1.172 17 N -0.221 5.221 18 C -0.051 4.051 19 C -0.071 4.071 20 N -0.157 5.157 21 N -0.094 5.094 22 N -0.078 5.078 23 N -0.058 5.058 24 C -0.094 4.094 25 C -0.175 4.175 26 C -0.185 4.185 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.193 0.807 35 H 0.125 0.875 36 H 0.165 0.835 37 H 0.165 0.835 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.096 -2.067 12.533 14.089 hybrid contribution -0.412 0.990 -1.785 2.083 sum 5.685 -1.077 10.747 12.206 Atomic orbital electron populations 1.22011 0.89504 1.03599 1.04426 1.21358 1.01154 1.01022 0.87750 0.85390 1.84910 1.69818 1.27529 0.91964 1.26144 1.13789 1.04501 0.88031 1.74330 1.13738 1.04864 1.22579 1.75327 1.29404 1.24877 0.93273 1.21969 0.91201 0.82988 0.96331 1.18610 1.30304 1.14175 0.88134 0.88110 1.26879 0.93094 0.93597 1.05245 1.70129 1.22026 1.10475 1.38169 0.84898 0.79795 0.78387 0.74778 1.19016 1.19483 1.17192 1.46328 1.48661 1.22689 1.04450 1.21848 0.96884 0.88073 0.98256 1.24983 0.99810 0.89694 0.92589 1.75030 1.18178 1.12185 1.10346 1.78601 1.12758 1.16110 1.01913 1.78712 1.18834 0.92162 1.18115 1.48076 1.37480 1.09937 1.10331 1.23084 1.13784 0.73020 0.99491 1.23599 0.95121 1.04530 0.94282 1.23677 0.96009 1.03660 0.95174 0.90656 0.91338 0.89878 0.90499 0.90777 0.89198 0.89414 0.80685 0.87457 0.83483 0.83550 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 8.99 71.98 0.65 -3.49 16 2 C 0.02 0.60 2.67 29.85 0.08 0.68 16 3 H 0.13 3.61 6.98 -2.39 -0.02 3.60 16 4 S 0.03 1.10 21.09 -56.49 -1.19 -0.09 16 5 C 0.05 2.19 7.78 179.18 1.39 3.58 16 6 N -0.31 -15.80 9.73 -56.18 -0.55 -16.35 16 7 N -0.38 -22.21 10.50 -55.02 -0.58 -22.78 16 8 C 0.32 17.41 7.53 133.23 1.00 18.41 16 9 C -0.47 -24.22 9.05 23.09 0.21 -24.01 16 10 H 0.10 4.61 7.27 -2.91 -0.02 4.59 16 11 C 0.03 1.64 5.49 85.29 0.47 2.11 16 12 N -0.78 -42.27 11.96 21.86 0.26 -42.01 16 13 Si 1.00 36.35 29.57 68.60 2.03 38.38 16 14 H -0.27 -9.39 7.11 99.48 0.71 -8.69 16 15 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 16 H -0.25 -8.38 7.11 99.48 0.71 -7.68 16 17 N -0.52 -23.89 3.26 -543.62 -1.77 -25.66 16 18 C 0.09 3.12 10.89 127.77 1.39 4.51 16 19 C 0.21 6.00 6.73 138.14 0.93 6.93 16 20 N -0.31 -10.19 12.19 -50.45 -0.61 -10.80 16 21 N -0.10 -3.30 13.43 37.01 0.50 -2.80 16 22 N -0.09 -2.60 12.69 37.02 0.47 -2.13 16 23 N -0.26 -6.28 3.67 -317.83 -1.17 -7.45 16 24 C 0.01 0.12 6.59 44.99 0.30 0.42 16 25 C -0.14 -1.42 10.16 30.62 0.31 -1.11 16 26 C -0.15 -1.57 10.46 30.62 0.32 -1.25 16 27 H 0.07 2.84 5.88 -2.39 -0.01 2.82 16 28 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.28 13.86 8.30 -92.70 -0.77 13.09 16 31 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.09 2.83 7.48 -2.39 -0.02 2.81 16 33 H 0.09 2.56 7.85 -2.38 -0.02 2.54 16 34 H 0.18 2.28 7.23 -2.39 -0.02 2.27 16 35 H 0.11 1.36 7.85 -2.39 -0.02 1.34 16 36 H 0.15 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.15 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -73.30 343.42 5.55 -67.75 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 1.11 Total: 17.16 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 7.05 Total: 6.78 kcal Atomic # 7 Polarization: -126.53 SS G_CDS: -3.45 Total: -129.98 kcal Atomic # 14 Polarization: 36.35 SS G_CDS: 2.03 Total: 38.38 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -1.19 Total: -0.09 kcal Total: -73.30 5.55 -67.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649782307.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 268.132 kcal (2) G-P(sol) polarization free energy of solvation -73.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 194.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 200.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds