Wall clock time and date at job start Sat Apr 11 2020 00:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21272 * 120.00114 * 2 1 4 4 N 1.34777 * 120.00098 * 179.97438 * 2 1 3 5 5 C 1.39258 * 120.00259 * 186.92116 * 4 2 1 6 6 C 1.38770 * 120.15112 * 23.05502 * 5 4 2 7 7 C 1.38105 * 120.14555 * 180.02562 * 6 5 4 8 8 C 1.38448 * 120.46261 * 0.04530 * 7 6 5 9 9 C 1.38127 * 120.30832 * 359.97438 * 8 7 6 10 10 F 1.35093 * 120.07782 * 180.02562 * 9 8 7 11 11 C 1.40011 * 119.84047 * 0.28238 * 9 8 7 12 12 C 1.47232 * 120.22306 * 179.70108 * 11 9 8 13 13 O 1.21533 * 120.00117 * 89.99778 * 12 11 9 14 14 O 1.34771 * 119.99660 * 269.99795 * 12 11 9 15 15 C 1.45203 * 116.99861 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47172 * 180.02562 * 15 14 12 17 17 C 1.50698 * 115.55016 * 65.88290 * 16 15 14 18 18 H 1.08000 * 119.99510 * 264.86544 * 17 16 15 19 19 C 1.37876 * 120.00226 * 84.87018 * 17 16 15 20 20 N 1.31517 * 120.00096 * 4.83922 * 19 17 16 21 21 Si 1.86800 * 120.00113 * 184.84706 * 19 17 16 22 22 H 1.48499 * 109.47425 * 89.99666 * 21 19 17 23 23 H 1.48497 * 109.46937 * 209.99874 * 21 19 17 24 24 H 1.48502 * 109.46940 * 329.99499 * 21 19 17 25 25 C 1.53001 * 117.49692 * 280.21299 * 16 15 14 26 26 C 1.53007 * 117.49883 * 211.55116 * 16 15 14 27 27 H 1.08997 * 109.47491 * 270.00364 * 1 2 3 28 28 H 1.09006 * 109.47303 * 30.00391 * 1 2 3 29 29 H 1.09006 * 109.47398 * 149.99781 * 1 2 3 30 30 H 0.97003 * 119.99475 * 6.92161 * 4 2 1 31 31 H 1.08000 * 119.92798 * 0.02562 * 6 5 4 32 32 H 1.07997 * 119.77083 * 180.02562 * 7 6 5 33 33 H 1.07993 * 119.84433 * 180.02562 * 8 7 6 34 34 H 1.09004 * 109.46989 * 299.99725 * 15 14 12 35 35 H 1.08997 * 109.47264 * 59.99681 * 15 14 12 36 36 H 0.96992 * 120.00099 * 180.02562 * 20 19 17 37 37 H 1.09002 * 117.50132 * 359.97438 * 25 16 15 38 38 H 1.09001 * 117.50073 * 145.02201 * 25 16 15 39 39 H 1.08998 * 117.49514 * 214.97948 * 26 16 15 40 40 H 1.08997 * 117.49335 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5659 -1.1716 0.1458 6 6 4.2066 -0.0997 0.7511 7 6 5.5801 -0.1039 0.8947 8 6 6.3304 -1.1737 0.4370 9 6 5.7123 -2.2502 -0.1687 10 9 6.4489 -3.2918 -0.6132 11 6 4.3210 -2.2569 -0.3258 12 6 3.6541 -3.3970 -0.9761 13 8 3.2756 -4.3404 -0.3099 14 8 3.4633 -3.3945 -2.3102 15 6 2.7985 -4.5513 -2.8832 16 6 2.6729 -4.3694 -4.3972 17 6 3.9725 -4.3531 -5.1599 18 1 4.4470 -3.4126 -5.3979 19 6 4.5556 -5.5387 -5.5538 20 7 3.9321 -6.6783 -5.3485 21 14 6.2314 -5.5264 -6.3791 22 1 7.2927 -5.6355 -5.3461 23 1 6.3310 -6.6756 -7.3143 24 1 6.4027 -4.2585 -7.1328 25 6 1.5415 -3.4760 -4.9099 26 6 1.4577 -4.9945 -5.0854 27 1 -0.3634 0.0001 1.0276 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5139 30 1 1.7011 -2.0042 -0.1003 31 1 3.6298 0.7396 1.1107 32 1 6.0725 0.7332 1.3671 33 1 7.4039 -1.1667 0.5548 34 1 3.3824 -5.4473 -2.6725 35 1 1.8055 -4.6535 -2.4455 36 1 4.3425 -7.5124 -5.6253 37 1 0.8865 -3.0182 -4.1686 38 1 1.7371 -2.8768 -5.7991 39 1 1.5982 -5.3934 -6.0900 40 1 0.7480 -5.5356 -4.4596 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649873984.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:13 Heat of formation + Delta-G solvation = -107.824661 kcal Electronic energy + Delta-G solvation = -27186.990262 eV Core-core repulsion = 23075.645462 eV Total energy + Delta-G solvation = -4111.344799 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.121 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.94260 -41.05883 -39.75695 -38.30595 -36.82314 -35.34498 -35.11767 -31.98098 -31.45737 -31.00698 -28.87892 -27.09385 -25.38735 -24.10871 -23.40429 -21.29031 -20.83002 -20.73346 -19.34131 -18.50020 -17.65688 -17.59025 -16.91091 -16.27721 -15.94457 -15.83514 -15.67735 -15.46515 -15.18852 -14.88395 -14.58399 -14.19297 -13.88301 -13.40060 -13.19399 -13.03464 -12.87332 -12.64854 -12.38211 -12.27604 -12.07665 -11.83921 -11.65483 -10.98948 -10.89527 -10.84088 -10.59272 -10.39087 -10.26791 -10.11073 -10.02376 -9.57807 -9.00011 -8.97055 -8.47189 -8.38604 -8.26022 -6.08997 -4.14997 0.72004 0.96533 2.23141 2.29046 2.64490 3.02758 3.29750 3.36382 3.39577 3.44699 4.08933 4.30657 4.38533 4.63147 4.80658 4.86159 4.89092 5.03752 5.10071 5.13537 5.20201 5.35229 5.49787 5.66923 5.78029 5.83435 5.85444 6.09085 6.12660 6.16058 6.22051 6.39373 6.54193 6.65862 6.67312 6.93924 6.98968 7.01598 7.27842 7.45067 7.68154 7.84513 8.09960 8.35015 8.87180 9.51526 10.99744 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.012689 B = 0.004561 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.158736 B = 6138.133797 C = 7486.065480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.517 3.483 3 O -0.518 6.518 4 N -0.669 5.669 5 C 0.218 3.782 6 C -0.150 4.150 7 C -0.051 4.051 8 C -0.176 4.176 9 C 0.165 3.835 10 F -0.122 7.122 11 C -0.171 4.171 12 C 0.504 3.496 13 O -0.503 6.503 14 O -0.321 6.321 15 C 0.112 3.888 16 C 0.033 3.967 17 C -0.490 4.490 18 H 0.063 0.937 19 C 0.070 3.930 20 N -0.882 5.882 21 Si 0.892 3.108 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.272 1.272 25 C -0.205 4.205 26 C -0.137 4.137 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.416 0.584 31 H 0.160 0.840 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.673 12.018 13.476 18.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.307 3.693 3 O -0.394 6.394 4 N -0.312 5.312 5 C 0.121 3.879 6 C -0.171 4.171 7 C -0.070 4.070 8 C -0.195 4.195 9 C 0.145 3.855 10 F -0.100 7.100 11 C -0.176 4.176 12 C 0.346 3.654 13 O -0.393 6.393 14 O -0.236 6.236 15 C 0.039 3.961 16 C 0.033 3.967 17 C -0.528 4.528 18 H 0.081 0.919 19 C -0.134 4.134 20 N -0.518 5.518 21 Si 0.719 3.281 22 H -0.204 1.204 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.242 4.242 26 C -0.174 4.174 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.105 0.895 30 H 0.253 0.747 31 H 0.177 0.823 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.448 12.235 13.564 18.589 hybrid contribution 0.806 -1.129 -0.616 1.518 sum -2.642 11.106 12.948 17.262 Atomic orbital electron populations 1.21921 0.89977 1.05904 1.05376 1.21076 0.91172 0.82558 0.74497 1.90685 1.70315 1.31161 1.47204 1.43631 1.05272 1.11062 1.71257 1.17311 0.82954 0.93147 0.94470 1.21411 0.95159 0.99210 1.01281 1.21031 0.93054 0.97006 0.95929 1.21056 1.01523 0.93566 1.03388 1.17283 0.86552 0.85611 0.96095 1.91594 1.76133 1.55578 1.86668 1.18844 0.92743 0.97744 1.08266 1.20784 0.76682 0.85300 0.82660 1.90856 1.47696 1.34963 1.65791 1.86754 1.70485 1.46467 1.19883 1.23065 0.93695 0.85035 0.94265 1.18781 0.90717 0.99404 0.87828 1.20380 1.04614 0.92709 1.35054 0.91904 1.25004 0.97509 0.95532 0.95322 1.69994 1.37460 0.97595 1.46764 0.86591 0.84442 0.77715 0.79343 1.20433 1.21164 1.19695 1.23000 1.04746 0.93806 1.02681 1.22530 1.00077 0.92752 1.02042 0.88083 0.88005 0.89485 0.74686 0.82316 0.84036 0.83766 0.90641 0.93940 0.92875 0.91746 0.90025 0.89005 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 10.31 36.00 0.37 -0.76 16 2 C 0.52 5.73 7.73 -10.99 -0.08 5.65 16 3 O -0.52 -7.22 14.21 5.56 0.08 -7.14 16 4 N -0.67 -8.16 5.17 -9.69 -0.05 -8.21 16 5 C 0.22 3.10 6.46 -83.48 -0.54 2.56 16 6 C -0.15 -1.84 8.71 -39.43 -0.34 -2.19 16 7 C -0.05 -0.53 10.02 -39.55 -0.40 -0.93 16 8 C -0.18 -2.07 10.00 -39.54 -0.40 -2.47 16 9 C 0.16 2.61 7.29 -38.96 -0.28 2.32 16 10 F -0.12 -2.19 16.83 2.25 0.04 -2.15 16 11 C -0.17 -2.87 5.77 -104.77 -0.60 -3.48 16 12 C 0.50 10.00 5.93 34.38 0.20 10.21 16 13 O -0.50 -10.68 16.90 -19.29 -0.33 -11.01 16 14 O -0.32 -7.15 10.18 -40.69 -0.41 -7.56 16 15 C 0.11 2.62 5.30 37.16 0.20 2.81 16 16 C 0.03 0.82 1.69 -155.66 -0.26 0.56 16 17 C -0.49 -13.48 8.78 -34.44 -0.30 -13.78 16 18 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 19 C 0.07 1.91 5.43 -17.82 -0.10 1.82 16 20 N -0.88 -24.81 12.66 55.43 0.70 -24.11 16 21 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.21 -4.38 9.96 -26.69 -0.27 -4.65 16 26 C -0.14 -3.11 9.14 -26.68 -0.24 -3.35 16 27 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.42 4.69 7.86 -40.82 -0.32 4.37 16 31 H 0.16 1.89 5.69 -52.49 -0.30 1.59 16 32 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 35 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 39 H 0.09 2.24 8.14 -51.93 -0.42 1.81 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 358.34 15.07 5.40 5.40 Total: -1.00 -32.77 358.34 -7.45 -40.22 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -4.81 Total: 3.83 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -3.05 Total: -5.68 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.65 Total: -32.32 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.66 Total: -25.71 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.77 -7.45 -40.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649873984.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.604 kcal (2) G-P(sol) polarization free energy of solvation -32.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds