Wall clock time and date at job start Sat Apr 11 2020 00:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36931 * 119.99370 * 2 1 4 4 H 1.08005 * 119.99876 * 203.03807 * 3 2 1 5 5 C 1.38816 * 120.00381 * 23.04694 * 3 2 1 6 6 N 1.31612 * 119.99910 * 12.93714 * 5 3 2 7 7 Si 1.86805 * 119.99947 * 192.93578 * 5 3 2 8 8 H 1.48503 * 109.47026 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47106 * 119.99851 * 7 5 3 10 10 H 1.48494 * 109.46976 * 239.99835 * 7 5 3 11 11 C 1.46494 * 120.00100 * 179.97438 * 2 1 3 12 12 C 1.53009 * 109.46721 * 90.00479 * 11 2 1 13 13 N 1.46504 * 109.46595 * 179.97438 * 12 11 2 14 14 C 1.34784 * 119.99589 * 180.02562 * 13 12 11 15 15 O 1.21590 * 119.99846 * 359.72128 * 14 13 12 16 16 C 1.47518 * 119.99658 * 179.97438 * 14 13 12 17 17 N 1.34398 * 125.77647 * 359.41431 * 16 14 13 18 18 N 1.28759 * 109.52717 * 179.87346 * 17 16 14 19 19 N 1.40207 * 108.36288 * 0.38661 * 18 17 16 20 20 C 1.46506 * 126.59173 * 179.73565 * 19 18 17 21 21 C 1.34812 * 106.81621 * 359.76232 * 19 18 17 22 22 C 1.50698 * 126.58221 * 180.02562 * 21 19 18 23 23 F 1.39905 * 109.47172 * 29.99558 * 22 21 19 24 24 F 1.39894 * 109.47094 * 149.99721 * 22 21 19 25 25 F 1.39898 * 109.46778 * 269.99617 * 22 21 19 26 26 H 1.09001 * 109.47115 * 275.11828 * 1 2 3 27 27 H 1.08997 * 109.47534 * 35.12548 * 1 2 3 28 28 H 1.09012 * 109.46642 * 155.12333 * 1 2 3 29 29 H 0.97004 * 120.00043 * 180.02562 * 6 5 3 30 30 H 1.08995 * 109.47733 * 330.00474 * 11 2 1 31 31 H 1.08998 * 109.47409 * 209.99919 * 11 2 1 32 32 H 1.08991 * 109.47092 * 60.00074 * 12 11 2 33 33 H 1.08992 * 109.46831 * 299.99418 * 12 11 2 34 34 H 0.96998 * 120.00257 * 359.97438 * 13 12 11 35 35 H 1.08990 * 109.47390 * 270.02588 * 20 19 18 36 36 H 1.09004 * 109.46742 * 30.03090 * 20 19 18 37 37 H 1.09006 * 109.46839 * 150.02218 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2233 -0.3660 5 6 1.5385 2.3401 0.4706 6 7 0.4118 2.2597 1.1460 7 14 2.3156 4.0075 0.1453 8 1 3.5697 3.8265 -0.6292 9 1 1.3712 4.8507 -0.6307 10 1 2.6238 4.6705 1.4378 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7109 -1.4419 13 7 3.1857 -2.9793 -1.4413 14 6 3.5233 -3.5630 -2.6083 15 8 3.2149 -3.0394 -3.6615 16 6 4.2619 -4.8400 -2.6077 17 7 4.6648 -5.5141 -1.5171 18 7 5.2783 -6.5874 -1.8768 19 7 5.2982 -6.6364 -3.2779 20 6 5.9002 -7.6837 -4.1067 21 6 4.6572 -5.5342 -3.7158 22 6 4.4215 -5.1433 -5.1519 23 9 4.3216 -6.2959 -5.9386 24 9 3.2342 -4.4096 -5.2467 25 9 5.4901 -4.3614 -5.6038 26 1 -0.3633 0.0917 1.0236 27 1 -0.3634 0.8405 -0.5913 28 1 -0.3633 -0.9324 -0.4324 29 1 -0.0154 3.0662 1.4746 30 1 1.6086 -2.0282 0.5146 31 1 3.1500 -1.1381 0.5143 32 1 3.0417 -0.9514 -1.9559 33 1 1.5003 -1.8415 -1.9556 34 1 3.4288 -3.3986 -0.6010 35 1 6.9387 -7.4284 -4.3173 36 1 5.8604 -8.6349 -3.5759 37 1 5.3493 -7.7672 -5.0436 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753066513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:17 Heat of formation + Delta-G solvation = -47.691785 kcal Electronic energy + Delta-G solvation = -27321.672413 eV Core-core repulsion = 22723.291143 eV Total energy + Delta-G solvation = -4598.381270 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.60112 -48.21993 -47.88520 -42.86761 -39.31101 -36.09298 -35.41841 -34.20716 -32.33990 -31.32556 -29.08846 -27.84233 -26.79047 -25.83762 -24.29814 -23.01017 -22.23233 -20.74846 -20.54859 -19.00526 -18.95769 -18.64095 -17.83828 -16.88302 -16.67194 -16.16661 -15.71041 -15.26739 -15.05404 -14.77960 -14.73367 -14.48952 -14.30908 -14.09505 -14.03308 -13.94709 -13.78473 -13.54686 -13.30963 -13.14312 -12.48782 -12.34095 -12.31472 -11.90735 -11.17338 -11.09781 -10.89153 -10.85271 -10.58871 -10.33523 -10.10997 -9.95554 -9.91667 -9.86152 -8.78102 -8.55426 -6.78500 -5.72643 -3.20781 0.15699 1.11278 1.23322 2.02028 2.97550 3.05907 3.10357 3.39875 3.43708 3.47290 3.49794 3.76821 3.84869 4.03211 4.37472 4.41319 4.53534 4.70212 4.75936 5.16009 5.41018 5.45630 5.63743 5.81443 5.89325 6.26686 6.50933 6.65093 6.76570 6.86252 7.20169 7.38273 7.62678 7.73392 7.82327 8.20166 8.39216 9.22756 9.85059 10.33080 11.32210 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.023314 B = 0.002780 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.715595 B =10069.359566 C =10496.379564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.597 5.597 3 C -0.259 4.259 4 H 0.070 0.930 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.905 3.095 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.143 3.857 12 C 0.094 3.906 13 N -0.698 5.698 14 C 0.584 3.416 15 O -0.517 6.517 16 C -0.022 4.022 17 N -0.199 5.199 18 N -0.027 5.027 19 N -0.327 5.327 20 C 0.066 3.934 21 C 0.000 4.000 22 C 0.547 3.453 23 F -0.176 7.176 24 F -0.120 7.120 25 F -0.159 7.159 26 H 0.033 0.967 27 H 0.042 0.958 28 H 0.000 1.000 29 H 0.252 0.748 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.406 0.594 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.313 -22.624 -11.973 27.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.319 5.319 3 C -0.389 4.389 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.735 3.265 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.014 3.986 12 C -0.032 4.032 13 N -0.348 5.348 14 C 0.365 3.635 15 O -0.392 6.392 16 C -0.164 4.164 17 N -0.070 5.070 18 N -0.007 5.007 19 N -0.113 5.113 20 C -0.075 4.075 21 C -0.139 4.139 22 C 0.490 3.510 23 F -0.157 7.157 24 F -0.101 7.101 25 F -0.141 7.141 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.018 0.982 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.241 0.759 35 H 0.118 0.882 36 H 0.131 0.869 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.376 -22.782 -11.384 27.500 hybrid contribution 0.341 0.995 -0.880 1.372 sum 10.717 -21.786 -12.264 27.201 Atomic orbital electron populations 1.20851 0.82273 0.95642 0.99659 1.43793 1.01970 1.00285 1.85871 1.19248 0.98392 0.85467 1.35754 0.91207 1.25033 0.97830 0.98621 0.98017 1.70082 1.19399 1.27175 1.38416 0.86171 0.78647 0.84161 0.77484 1.20219 1.21555 1.21723 1.20847 0.96978 0.89253 0.91542 1.22590 0.95702 0.82252 1.02608 1.45885 1.56467 1.24857 1.07636 1.16740 0.79498 0.81977 0.85309 1.90932 1.54510 1.63383 1.30409 1.21645 1.07133 1.00332 0.87282 1.74772 1.07172 1.00559 1.24486 1.82098 1.18329 1.14482 0.85796 1.50311 1.36922 1.16049 1.08064 1.22708 1.00206 0.89396 0.95145 1.21640 1.03769 0.92863 0.95620 1.16896 0.76688 0.75303 0.82152 1.93146 1.96050 1.49905 1.76625 1.93487 1.44723 1.76062 1.95828 1.93289 1.56053 1.74982 1.89745 0.94840 0.93911 0.98182 0.93750 0.93862 0.92723 0.90995 0.91636 0.75940 0.88189 0.86872 0.87069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.94 8.98 59.85 0.54 4.48 16 2 N -0.60 -14.90 2.92 -181.11 -0.53 -15.43 16 3 C -0.26 -7.11 9.65 -15.06 -0.15 -7.26 16 4 H 0.07 1.88 7.86 -52.48 -0.41 1.46 16 5 C 0.00 0.10 5.10 -17.43 -0.09 0.01 16 6 N -0.91 -26.43 10.71 55.49 0.59 -25.84 16 7 Si 0.91 21.97 29.57 -169.99 -5.03 16.94 16 8 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 C 0.14 2.82 5.76 -4.04 -0.02 2.79 16 12 C 0.09 1.70 6.00 -4.04 -0.02 1.67 16 13 N -0.70 -10.62 5.55 -61.35 -0.34 -10.96 16 14 C 0.58 9.16 7.76 -12.47 -0.10 9.07 16 15 O -0.52 -9.41 13.05 5.29 0.07 -9.34 16 16 C -0.02 -0.30 6.96 -83.55 -0.58 -0.88 16 17 N -0.20 -2.55 12.04 32.85 0.40 -2.16 16 18 N -0.03 -0.30 13.78 60.35 0.83 0.53 16 19 N -0.33 -2.94 4.03 -63.58 -0.26 -3.20 16 20 C 0.07 0.25 11.25 59.85 0.67 0.92 16 21 C 0.00 0.01 6.46 -81.88 -0.53 -0.52 16 22 C 0.55 5.97 3.24 36.00 0.12 6.09 16 23 F -0.18 -1.45 14.67 2.25 0.03 -1.42 16 24 F -0.12 -1.67 13.42 2.25 0.03 -1.64 16 25 F -0.16 -1.80 17.30 2.25 0.04 -1.76 16 26 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 27 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 28 H 0.00 -0.01 8.03 -51.92 -0.42 -0.43 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.04 0.78 8.07 -51.93 -0.42 0.37 16 31 H 0.05 1.06 8.04 -51.93 -0.42 0.65 16 32 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.41 5.35 8.16 -40.82 -0.33 5.01 16 35 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.11 0.32 5.69 -51.93 -0.30 0.02 16 LS Contribution 330.95 15.07 4.99 4.99 Total: -1.00 -32.66 330.95 -3.22 -35.87 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -3.88 Total: -2.96 kcal Atomic # 6 Polarization: 16.53 SS G_CDS: -0.16 Total: 16.37 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 0.70 Total: -57.06 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.07 Total: -9.34 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.10 Total: -4.82 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.66 -3.22 -35.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753066513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.818 kcal (2) G-P(sol) polarization free energy of solvation -32.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds