Wall clock time and date at job start Sat Apr 11 2020 00:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36931 * 119.99370 * 2 1 4 4 H 1.08005 * 119.99876 * 203.03807 * 3 2 1 5 5 C 1.38816 * 120.00381 * 23.04694 * 3 2 1 6 6 N 1.31612 * 119.99910 * 12.93714 * 5 3 2 7 7 Si 1.86805 * 119.99947 * 192.93578 * 5 3 2 8 8 H 1.48503 * 109.47026 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47106 * 119.99851 * 7 5 3 10 10 H 1.48494 * 109.46976 * 239.99835 * 7 5 3 11 11 C 1.46494 * 120.00100 * 179.97438 * 2 1 3 12 12 C 1.53009 * 109.46721 * 90.00479 * 11 2 1 13 13 N 1.46504 * 109.46595 * 179.97438 * 12 11 2 14 14 C 1.34784 * 119.99589 * 180.02562 * 13 12 11 15 15 O 1.21590 * 119.99846 * 359.72128 * 14 13 12 16 16 C 1.47518 * 119.99658 * 179.97438 * 14 13 12 17 17 N 1.34398 * 125.77647 * 359.41431 * 16 14 13 18 18 N 1.28759 * 109.52717 * 179.87346 * 17 16 14 19 19 N 1.40207 * 108.36288 * 0.38661 * 18 17 16 20 20 C 1.46506 * 126.59173 * 179.73565 * 19 18 17 21 21 C 1.34812 * 106.81621 * 359.76232 * 19 18 17 22 22 C 1.50698 * 126.58221 * 180.02562 * 21 19 18 23 23 F 1.39905 * 109.47172 * 29.99558 * 22 21 19 24 24 F 1.39894 * 109.47094 * 149.99721 * 22 21 19 25 25 F 1.39898 * 109.46778 * 269.99617 * 22 21 19 26 26 H 1.09001 * 109.47115 * 275.11828 * 1 2 3 27 27 H 1.08997 * 109.47534 * 35.12548 * 1 2 3 28 28 H 1.09012 * 109.46642 * 155.12333 * 1 2 3 29 29 H 0.97004 * 120.00043 * 180.02562 * 6 5 3 30 30 H 1.08995 * 109.47733 * 330.00474 * 11 2 1 31 31 H 1.08998 * 109.47409 * 209.99919 * 11 2 1 32 32 H 1.08991 * 109.47092 * 60.00074 * 12 11 2 33 33 H 1.08992 * 109.46831 * 299.99418 * 12 11 2 34 34 H 0.96998 * 120.00257 * 359.97438 * 13 12 11 35 35 H 1.08990 * 109.47390 * 270.02588 * 20 19 18 36 36 H 1.09004 * 109.46742 * 30.03090 * 20 19 18 37 37 H 1.09006 * 109.46839 * 150.02218 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2233 -0.3660 5 6 1.5385 2.3401 0.4706 6 7 0.4118 2.2597 1.1460 7 14 2.3156 4.0075 0.1453 8 1 3.5697 3.8265 -0.6292 9 1 1.3712 4.8507 -0.6307 10 1 2.6238 4.6705 1.4378 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7109 -1.4419 13 7 3.1857 -2.9793 -1.4413 14 6 3.5233 -3.5630 -2.6083 15 8 3.2149 -3.0394 -3.6615 16 6 4.2619 -4.8400 -2.6077 17 7 4.6648 -5.5141 -1.5171 18 7 5.2783 -6.5874 -1.8768 19 7 5.2982 -6.6364 -3.2779 20 6 5.9002 -7.6837 -4.1067 21 6 4.6572 -5.5342 -3.7158 22 6 4.4215 -5.1433 -5.1519 23 9 4.3216 -6.2959 -5.9386 24 9 3.2342 -4.4096 -5.2467 25 9 5.4901 -4.3614 -5.6038 26 1 -0.3633 0.0917 1.0236 27 1 -0.3634 0.8405 -0.5913 28 1 -0.3633 -0.9324 -0.4324 29 1 -0.0154 3.0662 1.4746 30 1 1.6086 -2.0282 0.5146 31 1 3.1500 -1.1381 0.5143 32 1 3.0417 -0.9514 -1.9559 33 1 1.5003 -1.8415 -1.9556 34 1 3.4288 -3.3986 -0.6010 35 1 6.9387 -7.4284 -4.3173 36 1 5.8604 -8.6349 -3.5759 37 1 5.3493 -7.7672 -5.0436 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753066513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:16 Heat of formation + Delta-G solvation = -71.544053 kcal Electronic energy + Delta-G solvation = -27322.706725 eV Core-core repulsion = 22723.291143 eV Total energy + Delta-G solvation = -4599.415582 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.45618 -49.02870 -48.82953 -43.74689 -40.58296 -37.85777 -36.23071 -35.69599 -33.41796 -33.09329 -30.29211 -28.92086 -27.89994 -27.63871 -25.64366 -24.33735 -23.13451 -22.37648 -21.80231 -19.87500 -19.85302 -19.53598 -18.96042 -18.59558 -17.69050 -17.31097 -16.90572 -16.56557 -16.45498 -15.90577 -15.69346 -15.51071 -15.36943 -15.27657 -15.17638 -14.98254 -14.87714 -14.65986 -14.48734 -14.24147 -14.08367 -13.93338 -13.13183 -13.04298 -12.79574 -12.74318 -12.63211 -12.47350 -12.13253 -11.95125 -11.82412 -11.77602 -11.36927 -10.86957 -10.65530 -10.13124 -8.82170 -7.83118 -5.33399 -0.70976 0.23850 0.34951 1.22842 1.47337 1.49397 1.59550 1.86037 1.92325 2.17442 2.52519 2.57216 2.90899 2.98160 3.11927 3.31163 3.52038 3.80385 4.01862 4.16415 4.25072 4.29527 4.38890 4.51679 4.69360 4.79627 4.84533 5.06681 5.10346 5.28651 5.43382 5.64972 5.72568 6.21529 6.32780 6.48887 6.99053 7.14839 7.84842 8.27802 9.20239 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.023314 B = 0.002780 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.715595 B =10069.359566 C =10496.379564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.615 5.615 3 C -0.266 4.266 4 H 0.072 0.928 5 C -0.051 4.051 6 N -0.936 5.936 7 Si 0.968 3.032 8 H -0.268 1.268 9 H -0.292 1.292 10 H -0.290 1.290 11 C 0.145 3.855 12 C 0.116 3.884 13 N -0.691 5.691 14 C 0.585 3.415 15 O -0.546 6.546 16 C -0.042 4.042 17 N -0.211 5.211 18 N -0.031 5.031 19 N -0.306 5.306 20 C 0.050 3.950 21 C 0.004 3.996 22 C 0.552 3.448 23 F -0.157 7.157 24 F -0.140 7.140 25 F -0.162 7.162 26 H 0.010 0.990 27 H 0.015 0.985 28 H 0.033 0.967 29 H 0.249 0.751 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.417 0.583 35 H 0.124 0.876 36 H 0.138 0.862 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.902 -24.600 -12.821 30.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.338 5.338 3 C -0.396 4.396 4 H 0.089 0.911 5 C -0.246 4.246 6 N -0.583 5.583 7 Si 0.796 3.204 8 H -0.192 1.192 9 H -0.218 1.218 10 H -0.217 1.217 11 C 0.018 3.982 12 C -0.010 4.010 13 N -0.343 5.343 14 C 0.368 3.632 15 O -0.423 6.423 16 C -0.184 4.184 17 N -0.082 5.082 18 N -0.011 5.011 19 N -0.092 5.092 20 C -0.088 4.088 21 C -0.137 4.137 22 C 0.495 3.505 23 F -0.138 7.138 24 F -0.121 7.121 25 F -0.143 7.143 26 H 0.029 0.971 27 H 0.033 0.967 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.254 0.746 35 H 0.142 0.858 36 H 0.156 0.844 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.012 -24.834 -12.231 30.176 hybrid contribution -0.067 1.407 -0.700 1.573 sum 11.945 -23.427 -12.932 29.304 Atomic orbital electron populations 1.20613 0.82474 0.96121 0.97984 1.44018 1.02271 1.01445 1.86087 1.19554 0.98546 0.86707 1.34793 0.91061 1.25783 0.98585 1.01863 0.98395 1.70229 1.20727 1.27622 1.39698 0.85196 0.78003 0.80052 0.77139 1.19194 1.21849 1.21701 1.20949 0.96966 0.87718 0.92577 1.22030 0.95183 0.83007 1.00798 1.45658 1.56280 1.23924 1.08396 1.16968 0.79027 0.82541 0.84670 1.90918 1.55629 1.64415 1.31298 1.21248 1.08664 1.00063 0.88421 1.74745 1.07723 1.01038 1.24669 1.82032 1.18227 1.13936 0.86944 1.50680 1.35087 1.15776 1.07666 1.23291 1.01307 0.89013 0.95191 1.21589 1.03602 0.93259 0.95262 1.16778 0.75937 0.75525 0.82272 1.93184 1.95924 1.48631 1.76072 1.93447 1.45926 1.76752 1.95937 1.93285 1.56023 1.75221 1.89752 0.97120 0.96654 0.94859 0.94192 0.91702 0.92310 0.93170 0.92550 0.74605 0.85781 0.84397 0.85894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.57 8.98 127.77 1.15 9.72 16 2 N -0.61 -30.70 2.92 -726.91 -2.12 -32.83 16 3 C -0.27 -14.63 9.65 84.04 0.81 -13.82 16 4 H 0.07 3.82 7.86 -2.91 -0.02 3.80 16 5 C -0.05 -2.88 5.10 84.86 0.43 -2.44 16 6 N -0.94 -55.57 10.71 21.65 0.23 -55.34 16 7 Si 0.97 45.53 29.57 68.60 2.03 47.55 16 8 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 9 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 10 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 11 C 0.14 5.60 5.76 86.38 0.50 6.10 16 12 C 0.12 4.16 6.00 86.38 0.52 4.67 16 13 N -0.69 -20.55 5.55 -466.28 -2.59 -23.14 16 14 C 0.59 18.12 7.76 86.69 0.67 18.79 16 15 O -0.55 -19.89 13.05 -4.00 -0.05 -19.94 16 16 C -0.04 -1.07 6.96 40.82 0.28 -0.78 16 17 N -0.21 -5.13 12.04 -50.00 -0.60 -5.73 16 18 N -0.03 -0.63 13.78 37.02 0.51 -0.12 16 19 N -0.31 -4.69 4.03 -355.08 -1.43 -6.12 16 20 C 0.05 0.19 11.25 127.77 1.44 1.63 16 21 C 0.00 0.08 6.46 41.72 0.27 0.35 16 22 C 0.55 11.23 3.24 71.24 0.23 11.46 16 23 F -0.16 -2.21 14.67 44.97 0.66 -1.55 16 24 F -0.14 -3.81 13.42 44.97 0.60 -3.20 16 25 F -0.16 -3.43 17.30 44.97 0.78 -2.65 16 26 H 0.01 0.57 7.34 -2.39 -0.02 0.55 16 27 H 0.01 0.80 7.34 -2.39 -0.02 0.78 16 28 H 0.03 1.39 8.03 -2.38 -0.02 1.37 16 29 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.06 2.24 8.07 -2.39 -0.02 2.22 16 31 H 0.06 2.23 8.04 -2.39 -0.02 2.21 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 33 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.42 10.52 8.16 -92.71 -0.76 9.77 16 35 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 36 H 0.14 -0.07 8.14 -2.38 -0.02 -0.09 16 37 H 0.12 0.25 5.69 -2.38 -0.01 0.24 16 Total: -1.00 -70.78 330.95 4.70 -66.08 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: 0.39 Total: 1.31 kcal Atomic # 6 Polarization: 29.38 SS G_CDS: 6.30 Total: 35.68 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -6.00 Total: -123.28 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.05 Total: -19.94 kcal Atomic # 9 Polarization: -9.44 SS G_CDS: 2.04 Total: -7.40 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -70.78 4.70 -66.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753066513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.460 kcal (2) G-P(sol) polarization free energy of solvation -70.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds