Wall clock time and date at job start Sat Apr 11 2020 00:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38625 * 120.39326 * 2 1 4 4 C 1.38617 * 118.56556 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.39904 * 179.97438 * 4 3 2 6 6 N 1.32254 * 119.20727 * 0.02562 * 4 3 2 7 7 C 1.32566 * 120.73367 * 359.97438 * 6 4 3 8 8 S 1.76199 * 119.22251 * 180.02562 * 7 6 4 9 9 C 1.81000 * 99.99847 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47057 * 179.97438 * 9 8 7 11 11 O 1.21273 * 120.00113 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99710 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99602 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46602 * 184.79227 * 13 12 10 15 15 C 1.50694 * 115.55031 * 294.81113 * 14 13 12 16 16 H 1.08008 * 119.99906 * 95.20931 * 15 14 13 17 17 C 1.37882 * 120.00284 * 274.93190 * 15 14 13 18 18 N 1.31509 * 119.99919 * 355.42076 * 17 15 14 19 19 Si 1.86800 * 120.00242 * 175.41794 * 17 15 14 20 20 H 1.48502 * 109.47002 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47091 * 119.99801 * 19 17 15 22 22 H 1.48497 * 109.47138 * 240.00628 * 19 17 15 23 23 C 1.53003 * 117.49932 * 80.48439 * 14 13 12 24 24 C 1.52998 * 117.49502 * 149.14583 * 14 13 12 25 25 N 1.32253 * 120.40115 * 180.27700 * 2 1 3 26 26 H 1.09005 * 109.46949 * 90.00299 * 1 2 3 27 27 H 1.08998 * 109.46700 * 209.99349 * 1 2 3 28 28 H 1.08995 * 109.47270 * 330.00124 * 1 2 3 29 29 H 1.07999 * 120.71820 * 0.02613 * 3 2 1 30 30 H 1.08999 * 109.46804 * 270.02295 * 5 4 3 31 31 H 1.08998 * 109.46934 * 30.01996 * 5 4 3 32 32 H 1.09003 * 109.46992 * 150.02189 * 5 4 3 33 33 H 1.09003 * 109.47035 * 59.99916 * 9 8 7 34 34 H 1.08998 * 109.47585 * 300.00182 * 9 8 7 35 35 H 0.97004 * 119.99767 * 359.97438 * 12 10 9 36 36 H 1.08993 * 109.47604 * 64.79661 * 13 12 10 37 37 H 1.09000 * 109.47101 * 304.78675 * 13 12 10 38 38 H 0.97004 * 120.00506 * 184.99920 * 18 17 15 39 39 H 1.08997 * 117.49622 * 214.99831 * 23 14 13 40 40 H 1.09000 * 117.49928 * 0.02562 * 23 14 13 41 41 H 1.08996 * 117.50254 * 359.97148 * 24 14 13 42 42 H 1.09005 * 117.49689 * 144.97447 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2084 1.1957 0.0000 4 6 3.5939 1.1515 -0.0005 5 6 4.3975 2.4264 -0.0011 6 7 4.2021 -0.0229 -0.0016 7 6 3.5018 -1.1485 -0.0015 8 16 4.3531 -2.6912 -0.0022 9 6 2.9443 -3.8275 -0.0027 10 6 3.4453 -5.2488 -0.0040 11 8 4.6374 -5.4715 -0.0050 12 7 2.5685 -6.2724 -0.0051 13 6 3.0555 -7.6540 -0.0058 14 6 1.8694 -8.6128 -0.1275 15 6 0.9101 -8.6108 1.0347 16 1 0.0204 -7.9996 0.9995 17 6 1.1654 -9.3938 2.1406 18 7 2.1968 -10.2096 2.1448 19 14 0.0462 -9.2955 3.6330 20 1 -1.0344 -8.3094 3.3773 21 1 -0.5528 -10.6296 3.8912 22 1 0.8355 -8.8697 4.8166 23 6 1.2872 -8.8427 -1.5236 24 6 2.1071 -9.9430 -0.8451 25 7 2.1763 -1.1407 -0.0055 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5137 28 1 -0.3633 0.8899 0.5138 29 1 1.6867 2.1413 0.0004 30 1 4.5905 2.7337 -1.0290 31 1 3.8388 3.2084 0.5130 32 1 5.3446 2.2592 0.5120 33 1 2.3389 -3.6552 -0.8927 34 1 2.3388 -3.6561 0.8872 35 1 1.6149 -6.0942 -0.0047 36 1 3.5886 -7.8519 0.9241 37 1 3.7297 -7.8012 -0.8495 38 1 2.3352 -10.8126 2.8920 39 1 0.2104 -8.9926 -1.6014 40 1 1.7495 -8.3113 -2.3555 41 1 3.1082 -10.1350 -1.2308 42 1 1.5698 -10.8168 -0.4762 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435954918.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:25 Heat of formation + Delta-G solvation = 22.886880 kcal Electronic energy + Delta-G solvation = -23494.028864 eV Core-core repulsion = 19986.858070 eV Total energy + Delta-G solvation = -3507.170794 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.125 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.13278 -39.14413 -36.72537 -35.07849 -33.57351 -33.39108 -32.00125 -30.29202 -29.46671 -27.85504 -26.13994 -25.08253 -24.59398 -21.98829 -21.21496 -20.02084 -19.40525 -17.95904 -17.83056 -16.53701 -16.29178 -15.88126 -15.74679 -15.23090 -15.14333 -14.66286 -14.40729 -13.86309 -13.82031 -13.61341 -13.49300 -13.23836 -13.01187 -12.85046 -12.64046 -12.59974 -12.47700 -11.75353 -11.60623 -11.25695 -11.03114 -10.98244 -10.56007 -10.54913 -10.46181 -10.27130 -10.11129 -9.74743 -9.51558 -9.43496 -9.08410 -8.54276 -8.36428 -8.17153 -7.77868 -6.11104 -4.21313 0.56187 0.83617 1.09838 2.02455 2.98854 3.22572 3.32066 3.33319 3.37393 3.72301 3.80811 4.03857 4.32122 4.34061 4.78396 4.83013 4.96687 5.05380 5.12606 5.15051 5.17203 5.19476 5.21927 5.35071 5.44119 5.46875 5.51213 5.65267 5.98286 6.09627 6.29788 6.42730 6.50807 6.67151 6.77339 6.79941 7.08949 7.15042 7.34547 7.49271 7.70829 7.77689 8.10821 8.29556 8.66558 8.80761 9.46346 10.96031 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.016848 B = 0.002729 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.530530 B =10256.284355 C =10885.327453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.192 3.808 3 C -0.246 4.246 4 C 0.190 3.810 5 C -0.105 4.105 6 N -0.510 5.510 7 C 0.291 3.709 8 S 0.092 5.908 9 C -0.149 4.149 10 C 0.520 3.480 11 O -0.543 6.543 12 N -0.693 5.693 13 C 0.163 3.837 14 C 0.023 3.977 15 C -0.501 4.501 16 H 0.061 0.939 17 C 0.073 3.927 18 N -0.874 5.874 19 Si 0.890 3.110 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.211 4.211 24 C -0.141 4.141 25 N -0.534 5.534 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.145 0.855 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.404 0.596 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.262 0.738 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.269 22.813 -4.997 23.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.044 3.956 3 C -0.273 4.273 4 C 0.041 3.959 5 C -0.163 4.163 6 N -0.228 5.228 7 C -0.084 4.084 8 S 0.327 5.673 9 C -0.301 4.301 10 C 0.303 3.697 11 O -0.423 6.423 12 N -0.342 5.342 13 C 0.040 3.960 14 C 0.022 3.978 15 C -0.539 4.539 16 H 0.079 0.921 17 C -0.131 4.131 18 N -0.510 5.510 19 Si 0.718 3.282 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.248 4.248 24 C -0.179 4.179 25 N -0.254 5.254 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.163 0.837 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.238 0.762 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.408 21.296 -4.852 21.846 hybrid contribution -2.957 1.109 0.885 3.280 sum -2.549 22.406 -3.966 22.896 Atomic orbital electron populations 1.20805 0.87599 1.04243 1.03800 1.21747 0.97506 0.88159 0.88229 1.22432 0.95548 1.00312 1.08970 1.21768 0.91650 0.93900 0.88589 1.20785 1.00288 0.91450 1.03740 1.68356 1.40263 0.97330 1.16896 1.25611 0.89604 0.99313 0.93890 1.86649 1.04975 0.86735 1.88902 1.23785 1.01885 0.95390 1.09066 1.19560 0.86845 0.85541 0.77762 1.90713 1.15570 1.85026 1.50949 1.45882 1.09842 1.06412 1.72090 1.21081 0.96196 0.78169 1.00551 1.19044 0.94643 0.94077 0.90038 1.20388 1.06720 1.27576 0.99180 0.92103 1.24997 0.94856 0.95067 0.98190 1.69993 1.27737 1.21692 1.31536 0.86576 0.80626 0.77955 0.83082 1.19692 1.21012 1.20902 1.23025 0.98684 1.06050 0.97032 1.22473 0.98210 0.94057 1.03203 1.68732 1.07870 1.30559 1.18200 0.89537 0.89663 0.90067 0.83717 0.89582 0.90063 0.89764 0.86157 0.85993 0.76157 0.91167 0.93868 0.92858 0.90351 0.91690 0.91767 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.22 36.01 0.37 -0.36 16 2 C 0.19 2.00 6.82 -82.27 -0.56 1.44 16 3 C -0.25 -2.21 9.53 -39.30 -0.37 -2.58 16 4 C 0.19 1.99 6.82 -82.27 -0.56 1.43 16 5 C -0.11 -0.68 10.22 36.01 0.37 -0.31 16 6 N -0.51 -7.04 10.34 -9.67 -0.10 -7.14 16 7 C 0.29 4.20 7.85 -90.83 -0.71 3.49 16 8 S 0.09 1.40 21.38 -107.50 -2.30 -0.90 16 9 C -0.15 -2.16 5.29 36.01 0.19 -1.97 16 10 C 0.52 9.49 7.85 -10.98 -0.09 9.40 16 11 O -0.54 -11.80 15.86 5.56 0.09 -11.72 16 12 N -0.69 -13.00 5.48 -60.29 -0.33 -13.33 16 13 C 0.16 3.61 5.50 -4.04 -0.02 3.58 16 14 C 0.02 0.52 1.47 -155.66 -0.23 0.29 16 15 C -0.50 -12.63 8.59 -34.44 -0.30 -12.92 16 16 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16 17 C 0.07 1.91 5.43 -17.82 -0.10 1.82 16 18 N -0.87 -23.96 12.65 55.43 0.70 -23.26 16 19 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 C -0.21 -4.30 9.96 -26.69 -0.27 -4.57 16 24 C -0.14 -3.19 9.14 -26.69 -0.24 -3.44 16 25 N -0.53 -7.04 9.07 -9.67 -0.09 -7.13 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 29 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.12 1.53 8.11 -51.91 -0.42 1.11 16 34 H 0.12 1.64 8.11 -51.92 -0.42 1.22 16 35 H 0.40 6.85 8.33 -40.82 -0.34 6.51 16 36 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 37 H 0.04 0.95 8.09 -51.93 -0.42 0.53 16 38 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 39 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.09 2.12 8.14 -51.93 -0.42 1.69 16 LS Contribution 376.65 15.07 5.68 5.68 Total: -1.00 -31.34 376.65 -10.11 -41.46 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.22 Total: 5.72 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -2.52 Total: -4.69 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: 0.18 Total: -50.85 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.30 Total: -0.90 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.34 -10.11 -41.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435954918.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.344 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds