Wall clock time and date at job start Sat Apr 11 2020 00:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47293 * 33.95953 * 3 2 1 5 5 C 1.36848 * 120.00386 * 83.29492 * 4 3 2 6 6 H 1.07995 * 120.00468 * 166.17189 * 5 4 3 7 7 C 1.39069 * 119.99962 * 346.17531 * 5 4 3 8 8 N 1.31357 * 119.99549 * 359.69865 * 7 5 4 9 9 Si 1.86796 * 120.00021 * 179.69694 * 7 5 4 10 10 H 1.48497 * 109.47343 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46708 * 120.00533 * 9 7 5 12 12 H 1.48501 * 109.47229 * 239.99814 * 9 7 5 13 13 C 1.34775 * 119.99793 * 263.29832 * 4 3 2 14 14 O 1.21622 * 119.99590 * 184.38049 * 13 4 3 15 15 C 1.47556 * 120.00386 * 4.38147 * 13 4 3 16 16 C 1.40195 * 120.86484 * 300.97838 * 15 13 4 17 17 N 1.31918 * 119.00936 * 180.02562 * 16 15 13 18 18 C 1.32751 * 120.89569 * 359.97438 * 17 16 15 19 19 C 1.48169 * 119.03849 * 180.02562 * 18 17 16 20 20 C 1.39462 * 120.12935 * 179.72294 * 19 18 17 21 21 C 1.37986 * 119.86206 * 179.69538 * 20 19 18 22 22 C 1.38344 * 120.13434 * 0.58486 * 21 20 19 23 23 C 1.38347 * 120.26556 * 359.71424 * 22 21 20 24 24 C 1.37983 * 120.13509 * 359.97438 * 23 22 21 25 25 N 1.32716 * 121.91625 * 0.02562 * 18 17 16 26 26 C 1.31948 * 120.90099 * 359.66068 * 25 18 17 27 27 C 1.50695 * 120.49644 * 180.30810 * 26 25 18 28 28 H 4.40637 * 5.51414 * 179.97438 * 4 1 2 29 29 H 1.09005 * 109.47592 * 273.95733 * 3 2 1 30 30 H 1.09000 * 109.46983 * 153.95539 * 3 2 1 31 31 H 0.97001 * 119.99713 * 179.97438 * 8 7 5 32 32 H 1.07997 * 120.49341 * 0.02562 * 16 15 13 33 33 H 1.08001 * 120.06505 * 0.02562 * 20 19 18 34 34 H 1.07994 * 119.93009 * 180.32087 * 21 20 19 35 35 H 1.07997 * 119.86591 * 179.74164 * 22 21 20 36 36 H 1.08003 * 119.93651 * 180.02562 * 23 22 21 37 37 H 1.07999 * 120.07147 * 180.02562 * 24 23 22 38 38 H 1.09003 * 109.47050 * 274.80819 * 27 26 25 39 39 H 1.09006 * 109.47078 * 34.80957 * 27 26 25 40 40 H 1.09000 * 109.47272 * 154.80913 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1447 -0.7715 5 6 3.2325 -1.0606 -2.1339 6 1 3.7928 -1.8035 -2.6821 7 6 2.6102 -0.0184 -2.8126 8 7 1.9238 0.8818 -2.1464 9 14 2.7505 0.1012 -4.6715 10 1 3.5713 -1.0272 -5.1796 11 1 1.3952 0.0381 -5.2752 12 1 3.3959 1.3876 -5.0374 13 6 3.4884 -2.2814 -0.1395 14 8 3.9689 -3.2036 -0.7703 15 6 3.2926 -2.4070 1.3176 16 6 3.9067 -1.5127 2.2055 17 7 3.7070 -1.6592 3.5012 18 6 2.9371 -2.6357 3.9662 19 6 2.7406 -2.7618 5.4293 20 6 1.9318 -3.7756 5.9422 21 6 1.7576 -3.8919 7.3060 22 6 2.3735 -2.9979 8.1636 23 6 3.1720 -1.9863 7.6604 24 6 3.3589 -1.8637 6.2988 25 7 2.3385 -3.5021 3.1585 26 6 2.4829 -3.4197 1.8496 27 6 1.7934 -4.4043 0.9406 28 1 -1.0498 -0.0004 0.0000 29 1 3.0094 -0.0701 1.0252 30 1 3.0089 0.9241 -0.4512 31 1 1.4900 1.6090 -2.6197 32 1 4.5340 -0.7158 1.8343 33 1 1.4472 -4.4716 5.2734 34 1 1.1357 -4.6797 7.7046 35 1 2.2308 -3.0904 9.2301 36 1 3.6506 -1.2916 8.3347 37 1 3.9828 -1.0739 5.9072 38 1 2.4080 -5.2990 0.8411 39 1 0.8257 -4.6735 1.3640 40 1 1.6478 -3.9525 -0.0406 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490975428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:41 Heat of formation + Delta-G solvation = 119.784168 kcal Electronic energy + Delta-G solvation = -25898.279801 eV Core-core repulsion = 22259.866836 eV Total energy + Delta-G solvation = -3638.412964 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.122 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.99753 -39.08913 -38.33177 -35.49216 -34.15736 -33.20011 -31.95666 -31.42209 -30.99642 -30.22621 -28.40747 -26.58225 -25.55905 -24.16208 -23.31339 -22.08543 -21.44372 -19.80539 -18.12008 -17.64720 -17.30451 -16.88172 -16.35509 -15.89855 -15.11174 -14.88979 -14.69843 -14.59052 -14.17434 -13.91443 -13.59629 -13.42041 -13.14959 -13.02577 -12.92976 -12.55541 -12.38161 -12.28723 -11.91307 -11.51126 -11.41899 -11.22762 -11.13444 -11.11016 -10.62393 -10.47507 -10.28061 -9.67496 -9.66127 -9.33158 -9.04166 -8.99588 -8.85465 -8.68021 -8.32824 -8.09775 -6.45179 -4.05490 0.45194 1.31897 1.36839 1.64891 3.01987 3.15207 3.21208 3.44225 3.60322 3.79468 3.84755 4.01696 4.14092 4.18648 4.24588 4.66056 4.74858 4.88103 4.91422 4.93925 5.03089 5.23195 5.35374 5.42446 5.46586 5.51343 5.64736 5.80893 5.85255 5.90702 5.97757 6.10577 6.15327 6.24654 6.38697 6.41670 6.56551 6.64936 6.81987 6.87006 7.03384 7.19682 7.35472 7.79664 8.21612 8.25442 8.83278 8.90603 9.11338 9.64370 10.46108 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.023718 B = 0.003282 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.271741 B = 8529.655867 C = 8843.771982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.093 4.093 3 C 0.224 3.776 4 N -0.423 5.423 5 C -0.302 4.302 6 H 0.111 0.889 7 C 0.030 3.970 8 N -0.865 5.865 9 Si 0.936 3.064 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.484 3.516 14 O -0.573 6.573 15 C -0.192 4.192 16 C 0.167 3.833 17 N -0.515 5.515 18 C 0.347 3.653 19 C -0.037 4.037 20 C -0.073 4.073 21 C -0.133 4.133 22 C -0.107 4.107 23 C -0.132 4.132 24 C -0.073 4.073 25 N -0.512 5.512 26 C 0.212 3.788 27 C -0.101 4.101 28 H 0.197 0.803 29 H 0.056 0.944 30 H 0.128 0.872 31 H 0.272 0.728 32 H 0.174 0.826 33 H 0.136 0.864 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.137 0.863 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 -2.795 14.718 15.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.095 4.095 3 C 0.102 3.898 4 N -0.139 5.139 5 C -0.429 4.429 6 H 0.129 0.871 7 C -0.174 4.174 8 N -0.504 5.504 9 Si 0.762 3.238 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.205 1.205 13 C 0.272 3.728 14 O -0.458 6.458 15 C -0.200 4.200 16 C 0.000 4.000 17 N -0.229 5.229 18 C 0.083 3.917 19 C -0.039 4.039 20 C -0.093 4.093 21 C -0.151 4.151 22 C -0.125 4.125 23 C -0.150 4.150 24 C -0.093 4.093 25 N -0.227 5.227 26 C 0.065 3.935 27 C -0.158 4.158 28 H 0.214 0.786 29 H 0.074 0.926 30 H 0.145 0.855 31 H 0.083 0.917 32 H 0.191 0.809 33 H 0.154 0.846 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.155 0.845 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.813 -3.129 15.217 15.557 hybrid contribution -0.264 0.507 -1.856 1.942 sum -1.077 -2.622 13.361 13.658 Atomic orbital electron populations 1.24190 0.95335 1.03222 1.06879 1.22890 0.94084 0.97650 0.94924 1.18812 0.84884 0.92812 0.93309 1.43733 1.53570 1.09524 1.07075 1.19902 1.30915 1.11610 0.80521 0.87086 1.25440 0.95095 0.95754 1.01127 1.69909 1.31421 1.13661 1.35393 0.85696 0.78264 0.78483 0.81371 1.19032 1.20564 1.20468 1.17346 0.86853 0.83650 0.84966 1.90662 1.49453 1.39159 1.66539 1.21969 1.01325 0.98647 0.98046 1.23397 0.93783 0.95421 0.87442 1.68218 1.17199 1.21621 1.15855 1.21203 0.89542 0.87117 0.93845 1.18114 1.00210 0.97724 0.87866 1.21361 0.95927 0.96667 0.95349 1.21094 1.00934 0.99929 0.93107 1.21294 0.96624 0.94884 0.99742 1.21099 0.99880 0.99025 0.95046 1.21361 0.97449 0.97817 0.92639 1.68088 1.23522 1.26792 1.04261 1.21677 0.89910 0.92220 0.89741 1.20759 0.99807 0.97345 0.97902 0.78607 0.92589 0.85498 0.91656 0.80864 0.84576 0.85714 0.86037 0.85681 0.84492 0.89415 0.90423 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.92 19.24 29.55 0.57 -5.35 16 2 C -0.09 -2.12 10.99 -37.12 -0.41 -2.53 16 3 C 0.22 4.91 5.10 -6.83 -0.03 4.87 16 4 N -0.42 -10.18 2.60 -119.11 -0.31 -10.49 16 5 C -0.30 -7.79 9.46 -15.00 -0.14 -7.94 16 6 H 0.11 2.99 7.22 -52.49 -0.38 2.62 16 7 C 0.03 0.72 5.36 -17.45 -0.09 0.63 16 8 N -0.87 -21.18 7.98 55.50 0.44 -20.74 16 9 Si 0.94 19.61 29.55 -169.99 -5.02 14.59 16 10 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 11 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 12 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 13 C 0.48 11.35 5.93 -12.46 -0.07 11.28 16 14 O -0.57 -15.03 16.08 5.26 0.08 -14.95 16 15 C -0.19 -3.88 4.99 -104.65 -0.52 -4.40 16 16 C 0.17 2.98 8.87 -16.78 -0.15 2.83 16 17 N -0.52 -8.95 9.42 -10.80 -0.10 -9.05 16 18 C 0.35 6.00 7.55 -156.77 -1.18 4.82 16 19 C -0.04 -0.54 5.88 -104.91 -0.62 -1.16 16 20 C -0.07 -0.93 9.56 -39.22 -0.38 -1.31 16 21 C -0.13 -1.35 10.03 -39.63 -0.40 -1.75 16 22 C -0.11 -1.00 10.04 -39.50 -0.40 -1.40 16 23 C -0.13 -1.34 10.03 -39.63 -0.40 -1.74 16 24 C -0.07 -0.92 9.56 -39.22 -0.38 -1.30 16 25 N -0.51 -9.20 9.36 -7.08 -0.07 -9.27 16 26 C 0.21 4.03 6.87 -81.83 -0.56 3.47 16 27 C -0.10 -1.73 9.65 36.00 0.35 -1.38 16 28 H 0.20 3.47 7.80 -54.10 -0.42 3.05 16 29 H 0.06 1.08 4.18 -51.93 -0.22 0.86 16 30 H 0.13 2.89 6.35 -51.93 -0.33 2.56 16 31 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 32 H 0.17 2.71 7.35 -52.49 -0.39 2.33 16 33 H 0.14 1.73 7.50 -52.49 -0.39 1.33 16 34 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 37 H 0.14 1.70 7.50 -52.49 -0.39 1.31 16 38 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.09 1.70 6.85 -51.93 -0.36 1.34 16 LS Contribution 348.96 15.07 5.26 5.26 Total: -1.00 -29.77 348.96 -8.65 -38.42 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -4.13 Total: 8.56 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -4.81 Total: -2.35 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -0.03 Total: -49.54 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.08 Total: -14.95 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.77 -8.65 -38.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490975428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.209 kcal (2) G-P(sol) polarization free energy of solvation -29.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds