Wall clock time and date at job start Sat Apr 11 2020 00:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47293 * 33.95953 * 3 2 1 5 5 C 1.36848 * 120.00386 * 83.29492 * 4 3 2 6 6 H 1.07995 * 120.00468 * 166.17189 * 5 4 3 7 7 C 1.39069 * 119.99962 * 346.17531 * 5 4 3 8 8 N 1.31357 * 119.99549 * 359.69865 * 7 5 4 9 9 Si 1.86796 * 120.00021 * 179.69694 * 7 5 4 10 10 H 1.48497 * 109.47343 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46708 * 120.00533 * 9 7 5 12 12 H 1.48501 * 109.47229 * 239.99814 * 9 7 5 13 13 C 1.34775 * 119.99793 * 263.29832 * 4 3 2 14 14 O 1.21622 * 119.99590 * 184.38049 * 13 4 3 15 15 C 1.47556 * 120.00386 * 4.38147 * 13 4 3 16 16 C 1.40195 * 120.86484 * 300.97838 * 15 13 4 17 17 N 1.31918 * 119.00936 * 180.02562 * 16 15 13 18 18 C 1.32751 * 120.89569 * 359.97438 * 17 16 15 19 19 C 1.48169 * 119.03849 * 180.02562 * 18 17 16 20 20 C 1.39462 * 120.12935 * 179.72294 * 19 18 17 21 21 C 1.37986 * 119.86206 * 179.69538 * 20 19 18 22 22 C 1.38344 * 120.13434 * 0.58486 * 21 20 19 23 23 C 1.38347 * 120.26556 * 359.71424 * 22 21 20 24 24 C 1.37983 * 120.13509 * 359.97438 * 23 22 21 25 25 N 1.32716 * 121.91625 * 0.02562 * 18 17 16 26 26 C 1.31948 * 120.90099 * 359.66068 * 25 18 17 27 27 C 1.50695 * 120.49644 * 180.30810 * 26 25 18 28 28 H 4.40637 * 5.51414 * 179.97438 * 4 1 2 29 29 H 1.09005 * 109.47592 * 273.95733 * 3 2 1 30 30 H 1.09000 * 109.46983 * 153.95539 * 3 2 1 31 31 H 0.97001 * 119.99713 * 179.97438 * 8 7 5 32 32 H 1.07997 * 120.49341 * 0.02562 * 16 15 13 33 33 H 1.08001 * 120.06505 * 0.02562 * 20 19 18 34 34 H 1.07994 * 119.93009 * 180.32087 * 21 20 19 35 35 H 1.07997 * 119.86591 * 179.74164 * 22 21 20 36 36 H 1.08003 * 119.93651 * 180.02562 * 23 22 21 37 37 H 1.07999 * 120.07147 * 180.02562 * 24 23 22 38 38 H 1.09003 * 109.47050 * 274.80819 * 27 26 25 39 39 H 1.09006 * 109.47078 * 34.80957 * 27 26 25 40 40 H 1.09000 * 109.47272 * 154.80913 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1447 -0.7715 5 6 3.2325 -1.0606 -2.1339 6 1 3.7928 -1.8035 -2.6821 7 6 2.6102 -0.0184 -2.8126 8 7 1.9238 0.8818 -2.1464 9 14 2.7505 0.1012 -4.6715 10 1 3.5713 -1.0272 -5.1796 11 1 1.3952 0.0381 -5.2752 12 1 3.3959 1.3876 -5.0374 13 6 3.4884 -2.2814 -0.1395 14 8 3.9689 -3.2036 -0.7703 15 6 3.2926 -2.4070 1.3176 16 6 3.9067 -1.5127 2.2055 17 7 3.7070 -1.6592 3.5012 18 6 2.9371 -2.6357 3.9662 19 6 2.7406 -2.7618 5.4293 20 6 1.9318 -3.7756 5.9422 21 6 1.7576 -3.8919 7.3060 22 6 2.3735 -2.9979 8.1636 23 6 3.1720 -1.9863 7.6604 24 6 3.3589 -1.8637 6.2988 25 7 2.3385 -3.5021 3.1585 26 6 2.4829 -3.4197 1.8496 27 6 1.7934 -4.4043 0.9406 28 1 -1.0498 -0.0004 0.0000 29 1 3.0094 -0.0701 1.0252 30 1 3.0089 0.9241 -0.4512 31 1 1.4900 1.6090 -2.6197 32 1 4.5340 -0.7158 1.8343 33 1 1.4472 -4.4716 5.2734 34 1 1.1357 -4.6797 7.7046 35 1 2.2308 -3.0904 9.2301 36 1 3.6506 -1.2916 8.3347 37 1 3.9828 -1.0739 5.9072 38 1 2.4080 -5.2990 0.8411 39 1 0.8257 -4.6735 1.3640 40 1 1.6478 -3.9525 -0.0406 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490975428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:41 Heat of formation + Delta-G solvation = 104.820333 kcal Electronic energy + Delta-G solvation = -25898.928681 eV Core-core repulsion = 22259.866836 eV Total energy + Delta-G solvation = -3639.061845 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.122 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.42609 -40.47945 -39.61460 -37.32313 -35.58842 -34.61163 -33.66750 -33.19427 -31.87033 -31.36375 -29.86281 -28.33490 -27.12592 -25.70774 -24.54292 -23.06932 -22.64560 -21.43356 -19.88253 -19.01952 -18.68919 -18.40582 -18.05409 -16.90551 -16.83987 -16.43270 -15.86547 -15.77804 -15.75282 -15.44071 -14.95638 -14.73815 -14.35189 -14.30678 -14.24868 -14.14363 -13.95912 -13.54571 -13.34751 -13.22385 -12.92688 -12.74096 -12.52644 -12.20366 -12.15539 -11.96217 -11.71215 -11.46814 -11.14821 -10.90794 -10.67640 -10.46344 -10.42265 -9.98004 -9.84850 -9.47058 -8.30884 -6.01018 -0.81811 -0.12365 0.51787 0.55809 1.32685 1.41904 1.54210 1.74164 2.01308 2.27347 2.40014 2.48460 2.58513 2.86639 2.96725 3.01861 3.07736 3.29926 3.70254 3.86898 3.91954 4.04056 4.08596 4.17260 4.33117 4.36726 4.48287 4.54263 4.58384 4.60795 4.75717 4.87132 4.99124 5.04906 5.17649 5.18824 5.37422 5.39369 5.53476 5.57716 5.62326 5.75427 5.94074 6.05948 6.33582 6.85103 7.01272 7.11221 7.26038 7.79375 8.57935 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.023718 B = 0.003282 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.271741 B = 8529.655867 C = 8843.771982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.131 4.131 3 C 0.231 3.769 4 N -0.431 5.431 5 C -0.339 4.339 6 H 0.087 0.913 7 C 0.003 3.997 8 N -0.872 5.872 9 Si 0.995 3.005 10 H -0.273 1.273 11 H -0.278 1.278 12 H -0.266 1.266 13 C 0.488 3.512 14 O -0.612 6.612 15 C -0.222 4.222 16 C 0.175 3.825 17 N -0.517 5.517 18 C 0.350 3.650 19 C -0.074 4.074 20 C -0.083 4.083 21 C -0.131 4.131 22 C -0.093 4.093 23 C -0.131 4.131 24 C -0.082 4.082 25 N -0.516 5.516 26 C 0.208 3.792 27 C -0.095 4.095 28 H 0.229 0.771 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.275 0.725 32 H 0.192 0.808 33 H 0.130 0.870 34 H 0.153 0.847 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.132 0.868 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.862 -2.535 17.610 17.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.133 4.133 3 C 0.109 3.891 4 N -0.147 5.147 5 C -0.466 4.466 6 H 0.105 0.895 7 C -0.200 4.200 8 N -0.510 5.510 9 Si 0.818 3.182 10 H -0.198 1.198 11 H -0.203 1.203 12 H -0.191 1.191 13 C 0.277 3.723 14 O -0.499 6.499 15 C -0.230 4.230 16 C 0.008 3.992 17 N -0.231 5.231 18 C 0.087 3.913 19 C -0.076 4.076 20 C -0.103 4.103 21 C -0.149 4.149 22 C -0.111 4.111 23 C -0.148 4.148 24 C -0.101 4.101 25 N -0.230 5.230 26 C 0.061 3.939 27 C -0.152 4.152 28 H 0.245 0.755 29 H 0.095 0.905 30 H 0.133 0.867 31 H 0.086 0.914 32 H 0.209 0.791 33 H 0.148 0.852 34 H 0.171 0.829 35 H 0.177 0.823 36 H 0.172 0.828 37 H 0.150 0.850 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.832 -2.845 18.143 18.455 hybrid contribution 0.007 0.387 -2.480 2.510 sum -1.826 -2.459 15.662 15.959 Atomic orbital electron populations 1.25028 0.96323 1.01798 1.05504 1.23284 0.94878 0.98971 0.96198 1.18750 0.84940 0.91459 0.93953 1.43816 1.53688 1.10383 1.06816 1.19800 1.32808 1.12347 0.81630 0.89510 1.26076 0.94338 0.94970 1.04590 1.70028 1.31014 1.13509 1.36428 0.84841 0.78035 0.78494 0.76804 1.19775 1.20328 1.19142 1.17724 0.85495 0.82912 0.86191 1.90609 1.50950 1.40387 1.67960 1.21715 1.04107 1.00911 0.96232 1.23653 0.93028 0.95004 0.87508 1.68357 1.17655 1.21967 1.15087 1.21954 0.87906 0.86075 0.95346 1.18257 1.02929 1.00012 0.86401 1.21453 0.95852 0.96206 0.96751 1.21450 1.00798 1.00671 0.91937 1.21780 0.94487 0.93276 1.01555 1.21463 0.99567 0.99625 0.94168 1.21465 0.97437 0.97431 0.93794 1.68204 1.24076 1.27231 1.03527 1.21945 0.89525 0.91941 0.90528 1.20725 1.01179 0.97031 0.96296 0.75462 0.90455 0.86739 0.91437 0.79144 0.85235 0.82885 0.82333 0.82800 0.84975 0.88472 0.87947 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -11.23 19.24 74.32 1.43 -9.80 16 2 C -0.13 -6.02 10.99 31.12 0.34 -5.68 16 3 C 0.23 10.36 5.10 84.57 0.43 10.79 16 4 N -0.43 -21.65 2.60 -649.02 -1.69 -23.33 16 5 C -0.34 -18.25 9.46 84.11 0.80 -17.45 16 6 H 0.09 4.99 7.22 -2.91 -0.02 4.96 16 7 C 0.00 0.15 5.36 84.96 0.46 0.61 16 8 N -0.87 -43.02 7.98 21.68 0.17 -42.85 16 9 Si 0.99 40.75 29.55 68.60 2.03 42.78 16 10 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.28 -11.23 7.11 99.48 0.71 -10.53 16 12 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 13 C 0.49 23.99 5.93 86.70 0.51 24.50 16 14 O -0.61 -33.89 16.08 -4.10 -0.07 -33.96 16 15 C -0.22 -9.24 4.99 -19.88 -0.10 -9.34 16 16 C 0.18 6.37 8.87 85.16 0.76 7.12 16 17 N -0.52 -17.93 9.42 -188.09 -1.77 -19.70 16 18 C 0.35 12.06 7.55 137.41 1.04 13.10 16 19 C -0.07 -2.08 5.88 -20.05 -0.12 -2.20 16 20 C -0.08 -1.97 9.56 22.51 0.22 -1.76 16 21 C -0.13 -2.20 10.03 22.24 0.22 -1.98 16 22 C -0.09 -1.31 10.04 22.32 0.22 -1.09 16 23 C -0.13 -2.17 10.03 22.24 0.22 -1.95 16 24 C -0.08 -1.92 9.56 22.50 0.22 -1.70 16 25 N -0.52 -18.56 9.36 -176.32 -1.65 -20.21 16 26 C 0.21 8.07 6.87 43.00 0.30 8.37 16 27 C -0.10 -3.34 9.65 71.23 0.69 -2.65 16 28 H 0.23 7.60 7.80 -4.43 -0.03 7.56 16 29 H 0.08 3.05 4.18 -2.38 -0.01 3.04 16 30 H 0.12 5.37 6.35 -2.39 -0.02 5.35 16 31 H 0.27 12.87 8.31 -92.71 -0.77 12.10 16 32 H 0.19 6.04 7.35 -2.91 -0.02 6.02 16 33 H 0.13 3.17 7.50 -2.91 -0.02 3.15 16 34 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 36 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.13 3.14 7.50 -2.91 -0.02 3.12 16 38 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.10 2.99 8.14 -2.38 -0.02 2.97 16 40 H 0.06 2.45 6.85 -2.39 -0.02 2.43 16 Total: -1.00 -66.69 348.96 5.73 -60.95 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 1.08 Total: 27.42 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 7.63 Total: 8.89 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -4.93 Total: -106.09 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.07 Total: -33.96 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -66.69 5.73 -60.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490975428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.774 kcal (2) G-P(sol) polarization free energy of solvation -66.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds