Wall clock time and date at job start Sat Apr 11 2020 00:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32592 * 123.42793 * 2 1 4 4 S 1.75468 * 110.78461 * 180.23944 * 3 2 1 5 5 C 1.70443 * 92.52617 * 359.75826 * 4 3 2 6 6 N 1.38807 * 124.64856 * 180.02562 * 5 4 3 7 7 C 1.34777 * 120.00339 * 359.94980 * 6 5 4 8 8 O 1.21592 * 119.99557 * 0.02562 * 7 6 5 9 9 N 1.34768 * 120.00480 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00450 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47529 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46982 * 300.00198 * 11 10 9 13 13 C 1.53003 * 109.47066 * 59.99830 * 11 10 9 14 14 C 1.52992 * 109.47305 * 180.02562 * 11 10 9 15 15 C 1.50700 * 109.47241 * 179.97438 * 14 11 10 16 16 H 1.07999 * 119.99737 * 0.02562 * 15 14 11 17 17 C 1.37879 * 120.00081 * 179.97438 * 15 14 11 18 18 N 1.31509 * 119.99969 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 120.00056 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.46670 * 89.99848 * 19 17 15 21 21 H 1.48492 * 109.47278 * 209.99936 * 19 17 15 22 22 H 1.48498 * 109.46806 * 330.00106 * 19 17 15 23 23 C 1.36989 * 110.70375 * 359.97438 * 5 4 3 24 24 C 1.43205 * 123.58379 * 179.97438 * 23 5 4 25 25 N 3.57695 * 86.68867 * 179.81451 * 2 1 3 26 26 H 1.09003 * 109.46973 * 270.19692 * 1 2 3 27 27 H 1.09003 * 109.47197 * 30.19200 * 1 2 3 28 28 H 1.08999 * 109.47338 * 150.19148 * 1 2 3 29 29 H 1.07996 * 124.60664 * 359.97438 * 3 2 1 30 30 H 0.96998 * 120.00172 * 179.97438 * 6 5 4 31 31 H 0.97008 * 119.99939 * 0.02562 * 9 7 6 32 32 H 1.09003 * 109.46777 * 300.00191 * 10 9 7 33 33 H 1.08998 * 109.46544 * 59.99792 * 10 9 7 34 34 H 1.09003 * 109.47043 * 59.99802 * 12 11 10 35 35 H 1.08996 * 109.46985 * 179.97438 * 12 11 10 36 36 H 1.09004 * 109.46624 * 300.00266 * 12 11 10 37 37 H 1.08994 * 109.46844 * 60.00549 * 13 11 10 38 38 H 1.08996 * 109.46742 * 180.02562 * 13 11 10 39 39 H 1.09003 * 109.46871 * 300.00149 * 13 11 10 40 40 H 1.09008 * 109.47347 * 299.99938 * 14 11 10 41 41 H 1.09004 * 109.47566 * 59.99534 * 14 11 10 42 42 H 0.97003 * 119.99793 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2374 1.1066 0.0000 4 16 3.9495 0.7225 -0.0069 5 6 3.6501 -0.9554 -0.0025 6 7 4.6357 -1.9329 -0.0046 7 6 5.9361 -1.5788 -0.0114 8 8 6.2459 -0.4030 -0.0153 9 7 6.8930 -2.5278 -0.0139 10 6 8.3065 -2.1429 -0.0220 11 6 9.1776 -3.4007 -0.0240 12 6 8.8814 -4.2282 1.2285 13 6 8.8686 -4.2331 -1.2700 14 6 10.6538 -2.9987 -0.0317 15 6 11.5118 -4.2376 -0.0330 16 1 11.0503 -5.2140 -0.0292 17 6 12.8859 -4.1245 -0.0402 18 7 13.6347 -5.2056 -0.0419 19 14 13.6841 -2.4355 -0.0475 20 1 13.9026 -1.9853 1.3507 21 1 14.9882 -2.5074 -0.7540 22 1 12.7958 -1.4713 -0.7449 23 6 2.3036 -1.2071 0.0045 24 6 1.7441 -2.5253 0.0089 25 7 1.3004 -3.5710 0.0116 26 1 -0.3633 0.0035 1.0277 27 1 -0.3634 0.8883 -0.5168 28 1 -0.3634 -0.8917 -0.5108 29 1 1.8335 2.1082 -0.0004 30 1 4.3885 -2.8708 -0.0014 31 1 6.6457 -3.4659 -0.0112 32 1 8.5175 -1.5538 -0.9144 33 1 8.5264 -1.5496 0.8655 34 1 7.8297 -4.5146 1.2344 35 1 9.5017 -5.1245 1.2268 36 1 9.1015 -3.6351 2.1162 37 1 9.0796 -3.6436 -2.1622 38 1 9.4889 -5.1293 -1.2711 39 1 7.8169 -4.5195 -1.2640 40 1 10.8651 -2.4090 -0.9238 41 1 10.8736 -2.4058 0.8562 42 1 14.6014 -5.1260 -0.0465 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568171581.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:43 Heat of formation + Delta-G solvation = 14.988547 kcal Electronic energy + Delta-G solvation = -23843.933625 eV Core-core repulsion = 20336.420333 eV Total energy + Delta-G solvation = -3507.513292 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.125 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.87379 -38.86047 -37.61315 -36.19360 -35.26111 -34.02455 -32.22582 -30.46589 -28.08393 -27.84941 -26.67755 -26.49216 -24.24498 -22.73326 -21.68174 -20.46301 -19.45002 -18.86541 -17.86926 -16.96374 -16.56589 -16.17945 -16.03181 -15.16339 -14.76526 -14.62705 -14.13445 -14.07612 -14.03992 -13.60567 -13.48726 -13.41295 -13.08321 -12.85608 -12.83830 -12.47038 -12.36355 -12.32065 -12.02908 -11.47615 -11.36667 -11.24793 -11.08068 -10.98656 -10.70805 -10.61734 -10.21459 -10.08900 -9.82228 -9.65664 -9.24087 -9.08418 -8.59440 -8.53883 -8.32789 -6.09824 -4.07890 0.50721 1.00449 1.67502 1.70800 2.20875 2.47027 2.73843 3.25750 3.27101 3.35658 3.38273 3.80270 3.91828 4.40139 4.49802 4.80005 5.13114 5.14825 5.21540 5.24197 5.28796 5.38638 5.45879 5.49084 5.66251 5.90704 5.95072 5.96209 5.99454 6.04332 6.17528 6.20294 6.33802 6.48482 6.51327 6.76825 6.91619 6.94998 7.09754 7.26419 7.30474 7.46520 7.71378 8.03052 8.45995 8.93621 9.52280 11.02759 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.026826 B = 0.002522 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.510965 B =11097.915153 C =11939.754012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.039 4.039 3 C -0.298 4.298 4 S 0.331 5.669 5 C 0.095 3.905 6 N -0.648 5.648 7 C 0.694 3.306 8 O -0.555 6.555 9 N -0.718 5.718 10 C 0.140 3.860 11 C -0.063 4.063 12 C -0.130 4.130 13 C -0.130 4.130 14 C -0.001 4.001 15 C -0.513 4.513 16 H 0.078 0.922 17 C 0.067 3.933 18 N -0.902 5.902 19 Si 0.875 3.125 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.265 1.265 23 C -0.140 4.140 24 C 0.280 3.720 25 N -0.432 5.432 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.170 0.830 30 H 0.415 0.585 31 H 0.402 0.598 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.029 0.971 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.029 0.971 40 H 0.019 0.981 41 H 0.015 0.985 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.299 11.843 0.077 26.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.051 4.051 3 C -0.433 4.433 4 S 0.594 5.406 5 C -0.129 4.129 6 N -0.293 5.293 7 C 0.393 3.607 8 O -0.433 6.433 9 N -0.372 5.372 10 C 0.018 3.982 11 C -0.064 4.064 12 C -0.187 4.187 13 C -0.187 4.187 14 C -0.039 4.039 15 C -0.551 4.551 16 H 0.096 0.904 17 C -0.134 4.134 18 N -0.541 5.541 19 Si 0.703 3.297 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.190 1.190 23 C -0.162 4.162 24 C -0.036 4.036 25 N -0.109 5.109 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.187 0.813 30 H 0.252 0.748 31 H 0.238 0.762 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.048 0.952 40 H 0.038 0.962 41 H 0.033 0.967 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.029 12.049 0.064 25.109 hybrid contribution -0.795 -0.759 0.031 1.100 sum -22.824 11.290 0.095 25.463 Atomic orbital electron populations 1.20524 0.89430 1.02972 1.02703 1.19244 0.96356 0.89140 1.00388 1.25820 1.00502 1.02487 1.14504 1.84554 0.99212 0.89071 1.67776 1.21886 0.89908 0.98488 1.02626 1.42056 1.03688 1.09006 1.74566 1.16031 0.79841 0.86147 0.78645 1.90859 1.79501 1.15925 1.57017 1.45342 1.06520 1.08415 1.76948 1.21727 0.75898 0.98254 1.02366 1.20727 0.96957 0.92778 0.95889 1.21797 0.98768 1.01392 0.96780 1.21790 0.98739 1.01361 0.96823 1.19589 0.89774 0.97859 0.96669 1.21046 0.90479 0.92820 1.50749 0.90407 1.25006 0.97480 0.96295 0.94663 1.69897 1.05104 1.28063 1.51048 0.86852 0.78946 0.85404 0.78525 1.20344 1.21478 1.18953 1.15786 0.89156 0.87739 1.23494 1.24918 0.93840 0.91931 0.92889 1.81287 1.07282 1.11063 1.11275 0.90745 0.90723 0.91718 0.81290 0.74842 0.76249 0.91215 0.91211 0.95171 0.90679 0.93214 0.93209 0.90680 0.95163 0.96231 0.96675 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.60 9.95 36.00 0.36 -0.24 16 2 C -0.04 -0.32 6.00 -104.01 -0.62 -0.94 16 3 C -0.30 -2.17 10.89 28.83 0.31 -1.85 16 4 S 0.33 3.11 19.96 -107.50 -2.15 0.97 16 5 C 0.09 0.97 6.98 -14.84 -0.10 0.86 16 6 N -0.65 -6.58 5.37 -16.00 -0.09 -6.66 16 7 C 0.69 8.59 8.53 -86.93 -0.74 7.85 16 8 O -0.56 -8.22 13.77 5.28 0.07 -8.14 16 9 N -0.72 -8.58 4.96 -65.23 -0.32 -8.91 16 10 C 0.14 2.05 4.56 -4.04 -0.02 2.03 16 11 C -0.06 -1.05 0.54 -154.51 -0.08 -1.13 16 12 C -0.13 -2.08 8.05 37.16 0.30 -1.78 16 13 C -0.13 -2.08 8.05 37.16 0.30 -1.78 16 14 C 0.00 -0.02 3.11 -27.89 -0.09 -0.11 16 15 C -0.51 -13.21 8.21 -34.44 -0.28 -13.49 16 16 H 0.08 2.13 5.92 -52.49 -0.31 1.82 16 17 C 0.07 1.84 5.47 -17.82 -0.10 1.74 16 18 N -0.90 -26.60 13.96 55.43 0.77 -25.83 16 19 Si 0.88 20.83 27.47 -169.99 -4.67 16.16 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 23 C -0.14 -1.37 5.88 -105.90 -0.62 -1.99 16 24 C 0.28 3.08 14.23 -22.47 -0.32 2.76 16 25 N -0.43 -5.51 18.54 41.83 0.78 -4.73 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 28 H 0.06 0.44 7.68 -51.93 -0.40 0.04 16 29 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.41 3.47 8.16 -40.82 -0.33 3.13 16 31 H 0.40 4.04 6.18 -40.82 -0.25 3.79 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 35 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 39 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 40 H 0.02 0.43 7.20 -51.92 -0.37 0.05 16 41 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 360.09 15.07 5.43 5.43 Total: -1.00 -30.46 360.09 -7.47 -37.93 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -5.59 Total: 1.87 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -1.71 Total: -8.08 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 1.14 Total: -46.13 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.07 Total: -8.14 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -2.15 Total: 0.97 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.46 -7.47 -37.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568171581.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.918 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds