Wall clock time and date at job start Sat Apr 11 2020 00:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32592 * 123.42793 * 2 1 4 4 S 1.75468 * 110.78461 * 180.23944 * 3 2 1 5 5 C 1.70443 * 92.52617 * 359.75826 * 4 3 2 6 6 N 1.38807 * 124.64856 * 180.02562 * 5 4 3 7 7 C 1.34777 * 120.00339 * 359.94980 * 6 5 4 8 8 O 1.21592 * 119.99557 * 0.02562 * 7 6 5 9 9 N 1.34768 * 120.00480 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00450 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47529 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46982 * 300.00198 * 11 10 9 13 13 C 1.53003 * 109.47066 * 59.99830 * 11 10 9 14 14 C 1.52992 * 109.47305 * 180.02562 * 11 10 9 15 15 C 1.50700 * 109.47241 * 179.97438 * 14 11 10 16 16 H 1.07999 * 119.99737 * 0.02562 * 15 14 11 17 17 C 1.37879 * 120.00081 * 179.97438 * 15 14 11 18 18 N 1.31509 * 119.99969 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 120.00056 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.46670 * 89.99848 * 19 17 15 21 21 H 1.48492 * 109.47278 * 209.99936 * 19 17 15 22 22 H 1.48498 * 109.46806 * 330.00106 * 19 17 15 23 23 C 1.36989 * 110.70375 * 359.97438 * 5 4 3 24 24 C 1.43205 * 123.58379 * 179.97438 * 23 5 4 25 25 N 3.57695 * 86.68867 * 179.81451 * 2 1 3 26 26 H 1.09003 * 109.46973 * 270.19692 * 1 2 3 27 27 H 1.09003 * 109.47197 * 30.19200 * 1 2 3 28 28 H 1.08999 * 109.47338 * 150.19148 * 1 2 3 29 29 H 1.07996 * 124.60664 * 359.97438 * 3 2 1 30 30 H 0.96998 * 120.00172 * 179.97438 * 6 5 4 31 31 H 0.97008 * 119.99939 * 0.02562 * 9 7 6 32 32 H 1.09003 * 109.46777 * 300.00191 * 10 9 7 33 33 H 1.08998 * 109.46544 * 59.99792 * 10 9 7 34 34 H 1.09003 * 109.47043 * 59.99802 * 12 11 10 35 35 H 1.08996 * 109.46985 * 179.97438 * 12 11 10 36 36 H 1.09004 * 109.46624 * 300.00266 * 12 11 10 37 37 H 1.08994 * 109.46844 * 60.00549 * 13 11 10 38 38 H 1.08996 * 109.46742 * 180.02562 * 13 11 10 39 39 H 1.09003 * 109.46871 * 300.00149 * 13 11 10 40 40 H 1.09008 * 109.47347 * 299.99938 * 14 11 10 41 41 H 1.09004 * 109.47566 * 59.99534 * 14 11 10 42 42 H 0.97003 * 119.99793 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2374 1.1066 0.0000 4 16 3.9495 0.7225 -0.0069 5 6 3.6501 -0.9554 -0.0025 6 7 4.6357 -1.9329 -0.0046 7 6 5.9361 -1.5788 -0.0114 8 8 6.2459 -0.4030 -0.0153 9 7 6.8930 -2.5278 -0.0139 10 6 8.3065 -2.1429 -0.0220 11 6 9.1776 -3.4007 -0.0240 12 6 8.8814 -4.2282 1.2285 13 6 8.8686 -4.2331 -1.2700 14 6 10.6538 -2.9987 -0.0317 15 6 11.5118 -4.2376 -0.0330 16 1 11.0503 -5.2140 -0.0292 17 6 12.8859 -4.1245 -0.0402 18 7 13.6347 -5.2056 -0.0419 19 14 13.6841 -2.4355 -0.0475 20 1 13.9026 -1.9853 1.3507 21 1 14.9882 -2.5074 -0.7540 22 1 12.7958 -1.4713 -0.7449 23 6 2.3036 -1.2071 0.0045 24 6 1.7441 -2.5253 0.0089 25 7 1.3004 -3.5710 0.0116 26 1 -0.3633 0.0035 1.0277 27 1 -0.3634 0.8883 -0.5168 28 1 -0.3634 -0.8917 -0.5108 29 1 1.8335 2.1082 -0.0004 30 1 4.3885 -2.8708 -0.0014 31 1 6.6457 -3.4659 -0.0112 32 1 8.5175 -1.5538 -0.9144 33 1 8.5264 -1.5496 0.8655 34 1 7.8297 -4.5146 1.2344 35 1 9.5017 -5.1245 1.2268 36 1 9.1015 -3.6351 2.1162 37 1 9.0796 -3.6436 -2.1622 38 1 9.4889 -5.1293 -1.2711 39 1 7.8169 -4.5195 -1.2640 40 1 10.8651 -2.4090 -0.9238 41 1 10.8736 -2.4058 0.8562 42 1 14.6014 -5.1260 -0.0465 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568171581.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:43 Heat of formation + Delta-G solvation = -3.623384 kcal Electronic energy + Delta-G solvation = -23844.740698 eV Core-core repulsion = 20336.420333 eV Total energy + Delta-G solvation = -3508.320366 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.81316 -39.69215 -38.86232 -37.06827 -36.10132 -35.36987 -34.05597 -31.20572 -29.70767 -28.59779 -28.00558 -27.65013 -25.22721 -24.20932 -22.74542 -21.22995 -20.40071 -19.82572 -19.05887 -18.86087 -17.43463 -17.12011 -16.97251 -16.27937 -15.93178 -15.68819 -15.55041 -15.21587 -15.16378 -14.74007 -14.29826 -14.22040 -14.18657 -14.10357 -14.03804 -13.82009 -13.32393 -13.10073 -12.92161 -12.84749 -12.64807 -12.63011 -12.32819 -12.28923 -12.16873 -11.75708 -11.71239 -11.52555 -11.22893 -11.00336 -10.91776 -10.69464 -10.27010 -9.26783 -9.04842 -8.21219 -6.21740 -0.25856 0.29677 0.96601 1.03129 1.37794 1.38248 1.41039 1.50574 1.63894 1.79834 2.40507 2.43582 2.91717 3.09745 3.14587 3.84557 3.87338 4.05251 4.13921 4.21405 4.55433 4.59852 4.66923 4.70752 4.74598 4.85055 4.87200 4.93096 4.98687 5.07437 5.08898 5.24195 5.30172 5.37414 5.41352 5.42122 5.43674 5.52863 5.56694 5.68583 5.77655 6.38551 6.45512 6.58257 6.85806 7.10021 7.41138 8.94393 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.026826 B = 0.002522 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.510965 B =11097.915153 C =11939.754012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.050 4.050 3 C -0.276 4.276 4 S 0.315 5.685 5 C 0.078 3.922 6 N -0.640 5.640 7 C 0.697 3.303 8 O -0.580 6.580 9 N -0.712 5.712 10 C 0.155 3.845 11 C -0.057 4.057 12 C -0.126 4.126 13 C -0.126 4.126 14 C -0.003 4.003 15 C -0.502 4.502 16 H 0.049 0.951 17 C 0.002 3.998 18 N -0.953 5.953 19 Si 0.936 3.064 20 H -0.272 1.272 21 H -0.292 1.292 22 H -0.246 1.246 23 C -0.140 4.140 24 C 0.296 3.704 25 N -0.466 5.466 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.054 0.946 29 H 0.199 0.801 30 H 0.423 0.577 31 H 0.412 0.588 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.043 0.957 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.043 0.957 39 H 0.065 0.935 40 H 0.019 0.981 41 H 0.017 0.983 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.696 14.257 0.098 29.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.061 4.061 3 C -0.411 4.411 4 S 0.578 5.422 5 C -0.145 4.145 6 N -0.286 5.286 7 C 0.396 3.604 8 O -0.459 6.459 9 N -0.366 5.366 10 C 0.031 3.969 11 C -0.058 4.058 12 C -0.183 4.183 13 C -0.183 4.183 14 C -0.041 4.041 15 C -0.540 4.540 16 H 0.068 0.932 17 C -0.194 4.194 18 N -0.595 5.595 19 Si 0.761 3.239 20 H -0.197 1.197 21 H -0.218 1.218 22 H -0.170 1.170 23 C -0.163 4.163 24 C -0.019 4.019 25 N -0.144 5.144 26 H 0.100 0.900 27 H 0.114 0.886 28 H 0.074 0.926 29 H 0.216 0.784 30 H 0.261 0.739 31 H 0.250 0.750 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.477 14.459 0.085 28.429 hybrid contribution -0.169 -1.518 0.027 1.528 sum -24.647 12.940 0.112 27.838 Atomic orbital electron populations 1.20584 0.87941 1.03580 1.03420 1.19484 0.97389 0.88553 1.00678 1.26048 0.98803 1.03610 1.12639 1.84638 1.01178 0.88795 1.67630 1.22015 0.89924 0.98815 1.03698 1.41848 1.02961 1.09542 1.74233 1.15996 0.80353 0.85667 0.78362 1.90857 1.80177 1.16909 1.57946 1.45056 1.05474 1.08989 1.77130 1.21334 0.76868 0.96517 1.02144 1.20562 0.94576 0.94053 0.96601 1.21729 1.00429 0.99812 0.96358 1.21722 1.00399 0.99784 0.96406 1.19566 0.92327 0.95700 0.96537 1.21375 0.90822 0.93562 1.48234 0.93240 1.25881 0.98500 0.99889 0.95107 1.70051 1.05272 1.30454 1.53721 0.85869 0.77953 0.81254 0.78836 1.19726 1.21828 1.16980 1.15988 0.89258 0.87712 1.23319 1.25067 0.92977 0.91861 0.91947 1.81303 1.08444 1.12052 1.12557 0.89960 0.88613 0.92647 0.78371 0.73884 0.75031 0.91559 0.91485 0.91600 0.93820 0.93290 0.93319 0.93811 0.91591 0.96271 0.96423 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 9.95 71.24 0.71 -0.21 16 2 C -0.05 -0.67 6.00 -19.39 -0.12 -0.79 16 3 C -0.28 -3.15 10.89 66.66 0.73 -2.43 16 4 S 0.31 5.28 19.96 -56.49 -1.13 4.15 16 5 C 0.08 1.46 6.98 83.29 0.58 2.04 16 6 N -0.64 -11.75 5.37 -322.79 -1.73 -13.49 16 7 C 0.70 15.81 8.53 179.06 1.53 17.34 16 8 O -0.58 -16.12 13.77 -4.01 -0.06 -16.18 16 9 N -0.71 -15.24 4.96 -478.54 -2.37 -17.62 16 10 C 0.16 4.21 4.56 86.38 0.39 4.60 16 11 C -0.06 -1.85 0.54 -52.18 -0.03 -1.88 16 12 C -0.13 -3.89 8.05 71.98 0.58 -3.31 16 13 C -0.13 -3.89 8.05 71.98 0.58 -3.31 16 14 C 0.00 -0.14 3.11 29.85 0.09 -0.05 16 15 C -0.50 -26.37 8.21 25.60 0.21 -26.16 16 16 H 0.05 2.83 5.92 -2.91 -0.02 2.81 16 17 C 0.00 0.13 5.47 84.66 0.46 0.59 16 18 N -0.95 -58.10 13.96 21.45 0.30 -57.80 16 19 Si 0.94 43.07 27.47 68.60 1.88 44.95 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 22 H -0.25 -10.48 6.54 99.48 0.65 -9.83 16 23 C -0.14 -2.47 5.88 -20.70 -0.12 -2.60 16 24 C 0.30 6.11 14.23 88.33 1.26 7.37 16 25 N -0.47 -11.44 18.54 19.00 0.35 -11.08 16 26 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.10 0.51 8.13 -2.39 -0.02 0.49 16 28 H 0.05 0.64 7.68 -2.39 -0.02 0.63 16 29 H 0.20 1.06 8.06 -2.91 -0.02 1.03 16 30 H 0.42 6.22 8.16 -92.71 -0.76 5.47 16 31 H 0.41 7.03 6.18 -92.70 -0.57 6.46 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 1.54 6.86 -2.39 -0.02 1.52 16 35 H 0.04 1.62 6.62 -2.39 -0.02 1.61 16 36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.04 1.63 6.62 -2.39 -0.02 1.61 16 39 H 0.07 1.54 6.86 -2.39 -0.02 1.53 16 40 H 0.02 0.81 7.20 -2.38 -0.02 0.79 16 41 H 0.02 0.73 7.57 -2.39 -0.02 0.72 16 42 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -67.39 360.09 3.79 -63.60 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -0.31 Total: 12.27 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 6.85 Total: -8.80 kcal Atomic # 7 Polarization: -96.53 SS G_CDS: -3.46 Total: -99.99 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.06 Total: -16.18 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.95 kcal Atomic # 16 Polarization: 5.28 SS G_CDS: -1.13 Total: 4.15 kcal Total: -67.39 3.79 -63.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568171581.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.980 kcal (2) G-P(sol) polarization free energy of solvation -67.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds