Wall clock time and date at job start Sat Apr 11 2020 00:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29359 * 121.48923 * 2 1 4 4 S 1.69445 * 108.09131 * 180.02562 * 3 2 1 5 5 C 1.72011 * 96.10846 * 359.80030 * 4 3 2 6 6 N 1.38030 * 127.36720 * 180.21597 * 5 4 3 7 7 C 1.46494 * 119.99745 * 0.13633 * 6 5 4 8 8 C 1.52998 * 117.49763 * 223.74679 * 7 6 5 9 9 C 1.52998 * 117.49796 * 155.08849 * 7 6 5 10 10 C 1.39094 * 105.27030 * 0.32890 * 5 4 3 11 11 C 1.46718 * 123.24959 * 179.88489 * 10 5 4 12 12 O 1.21690 * 120.00483 * 274.66004 * 11 10 5 13 13 N 1.34779 * 119.99882 * 94.65579 * 11 10 5 14 14 C 1.46500 * 120.00056 * 185.02641 * 13 11 10 15 15 C 1.53000 * 109.47111 * 175.05093 * 14 13 11 16 16 C 1.50703 * 115.55157 * 65.21064 * 15 14 13 17 17 H 1.07998 * 120.00176 * 264.82105 * 16 15 14 18 18 C 1.37882 * 119.99907 * 84.80990 * 16 15 14 19 19 N 1.31508 * 119.99990 * 184.67265 * 18 16 15 20 20 Si 1.86799 * 120.00068 * 4.67952 * 18 16 15 21 21 H 1.48507 * 109.47194 * 94.52117 * 20 18 16 22 22 H 1.48493 * 109.47147 * 214.52381 * 20 18 16 23 23 H 1.48501 * 109.47057 * 334.52787 * 20 18 16 24 24 C 1.52994 * 117.49882 * 279.53923 * 15 14 13 25 25 C 1.52999 * 117.50030 * 210.88045 * 15 14 13 26 26 H 1.09001 * 109.47250 * 269.97357 * 1 2 3 27 27 H 1.08999 * 109.47141 * 29.97940 * 1 2 3 28 28 H 1.09003 * 109.46685 * 149.98167 * 1 2 3 29 29 H 0.96997 * 119.99664 * 180.13856 * 6 5 4 30 30 H 1.08998 * 115.55110 * 9.41859 * 7 6 5 31 31 H 1.08997 * 117.50259 * 359.97438 * 8 7 6 32 32 H 1.09004 * 117.50251 * 145.02358 * 8 7 6 33 33 H 1.09005 * 117.49842 * 214.97583 * 9 7 6 34 34 H 1.09003 * 117.49899 * 0.02562 * 9 7 6 35 35 H 0.97004 * 119.99894 * 4.74701 * 13 11 10 36 36 H 1.09004 * 109.47041 * 295.04899 * 14 13 11 37 37 H 1.08997 * 109.47229 * 55.05144 * 14 13 11 38 38 H 0.97000 * 120.00469 * 180.02562 * 19 18 16 39 39 H 1.08998 * 117.49875 * 0.02562 * 24 15 14 40 40 H 1.09003 * 117.49918 * 145.02095 * 24 15 14 41 41 H 1.08998 * 117.50196 * 214.98538 * 25 15 14 42 42 H 1.09004 * 117.49869 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1827 1.1031 0.0000 4 16 3.8310 0.7105 -0.0007 5 6 3.6128 -0.9957 0.0049 6 7 4.5946 -1.9659 0.0110 7 6 6.0073 -1.5782 0.0162 8 6 6.9520 -2.3385 -0.9168 9 6 7.0119 -2.5771 0.5940 10 6 2.2353 -1.1889 -0.0005 11 6 1.6091 -2.5157 -0.0007 12 8 1.4312 -3.1045 -1.0506 13 7 1.2308 -3.0824 1.1622 14 6 0.7073 -4.4506 1.1741 15 6 0.4711 -4.8938 2.6193 16 6 -0.5961 -4.1354 3.3656 17 1 -0.3255 -3.2993 3.9934 18 6 -1.9181 -4.5088 3.2468 19 7 -2.8581 -3.7924 3.8234 20 14 -2.3738 -6.0324 2.2668 21 1 -2.4855 -7.1955 3.1834 22 1 -3.6748 -5.8121 1.5857 23 1 -1.3231 -6.3010 1.2523 24 6 1.6840 -5.3761 3.4174 25 6 0.6342 -6.3814 2.9377 26 1 -0.3634 -0.0005 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8899 -0.5141 29 1 4.3492 -2.9043 0.0117 30 1 6.2033 -0.5179 0.1759 31 1 6.5225 -3.1274 -1.5342 32 1 7.7697 -1.7785 -1.3706 33 1 7.8690 -2.1739 1.1335 34 1 6.6217 -3.5229 0.9699 35 1 1.3091 -2.5858 1.9918 36 1 -0.2340 -4.4842 0.6254 37 1 1.4271 -5.1192 0.7021 38 1 -3.7881 -4.0553 3.7402 39 1 2.6503 -5.3773 2.9131 40 1 1.7099 -5.1452 4.4824 41 1 -0.0303 -6.8115 3.6871 42 1 0.9092 -7.0445 2.1174 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590359290.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:49 Heat of formation + Delta-G solvation = 51.341748 kcal Electronic energy + Delta-G solvation = -24836.048718 eV Core-core repulsion = 21330.111819 eV Total energy + Delta-G solvation = -3505.936899 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.00396 -38.48463 -37.92176 -36.91757 -34.34160 -33.40357 -32.17159 -29.71874 -29.41239 -26.77506 -25.32564 -23.35426 -22.82715 -22.62863 -21.81412 -20.74427 -19.51581 -19.20757 -18.23185 -17.30817 -16.54941 -16.32115 -15.65086 -15.24252 -15.00656 -14.87144 -14.51074 -14.25278 -13.88112 -13.41798 -13.18002 -13.06673 -12.91665 -12.74484 -12.45771 -12.27573 -12.02980 -12.00165 -11.88903 -11.21597 -11.18949 -11.04575 -10.89352 -10.59164 -10.50334 -10.40794 -10.25676 -9.71263 -9.46101 -9.24746 -8.75185 -8.56935 -8.51769 -8.35308 -7.89105 -6.19031 -4.23908 0.90507 1.13180 1.88580 2.39526 2.73198 2.98465 3.25418 3.36893 3.40124 3.41340 3.84166 4.27621 4.37000 4.42494 4.46561 4.75813 4.84991 5.09406 5.15742 5.21511 5.33719 5.42270 5.47392 5.49857 5.62278 5.64533 5.79976 5.80850 5.94547 6.01732 6.16561 6.27842 6.35447 6.43772 6.50784 6.64126 6.86360 6.92656 6.97689 7.00885 7.07733 7.63522 8.12561 8.37537 8.69845 8.81376 9.44005 10.92013 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.004205 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.931035 B = 6656.541072 C = 7874.604554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.199 3.801 3 N -0.490 5.490 4 S 0.230 5.770 5 C 0.159 3.841 6 N -0.654 5.654 7 C 0.074 3.926 8 C -0.190 4.190 9 C -0.183 4.183 10 C -0.318 4.318 11 C 0.587 3.413 12 O -0.551 6.551 13 N -0.691 5.691 14 C 0.156 3.844 15 C -0.014 4.014 16 C -0.492 4.492 17 H 0.078 0.922 18 C 0.082 3.918 19 N -0.892 5.892 20 Si 0.876 3.124 21 H -0.280 1.280 22 H -0.293 1.293 23 H -0.255 1.255 24 C -0.179 4.179 25 C -0.191 4.191 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.414 0.586 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.407 0.593 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.266 0.734 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.812 4.731 -6.623 19.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.023 3.977 3 N -0.312 5.312 4 S 0.375 5.625 5 C -0.077 4.077 6 N -0.282 5.282 7 C -0.033 4.033 8 C -0.229 4.229 9 C -0.221 4.221 10 C -0.342 4.342 11 C 0.369 3.631 12 O -0.430 6.430 13 N -0.340 5.340 14 C 0.033 3.967 15 C -0.015 4.015 16 C -0.529 4.529 17 H 0.096 0.904 18 C -0.121 4.121 19 N -0.528 5.528 20 Si 0.703 3.297 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.179 1.179 24 C -0.216 4.216 25 C -0.229 4.229 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.252 0.748 30 H 0.151 0.849 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.242 0.758 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 18.481 6.425 -7.319 20.890 hybrid contribution -1.291 -2.783 -0.011 3.068 sum 17.190 3.641 -7.330 19.039 Atomic orbital electron populations 1.20688 0.86062 1.04067 1.04603 1.20914 0.98503 0.86495 0.91812 1.76411 0.97775 1.24707 1.32298 1.83848 1.13270 0.91600 1.73744 1.23090 0.91144 0.97848 0.95640 1.43059 1.01750 1.06659 1.76758 1.21772 0.77868 0.97878 1.05753 1.23529 1.02125 1.03845 0.93384 1.23448 1.01083 1.01114 0.96457 1.19576 0.90471 0.96375 1.27779 1.17161 0.78226 0.83688 0.84015 1.90774 1.56275 1.64325 1.31585 1.45959 1.62447 1.16426 1.09140 1.21156 0.97464 0.80796 0.97298 1.19620 0.97055 0.93144 0.91693 1.20166 0.88922 1.15792 1.28052 0.90376 1.24950 0.96204 0.96425 0.94537 1.69886 1.00622 1.38494 1.43821 0.86893 0.78040 0.83579 0.81162 1.20593 1.21948 1.17889 1.22829 0.92680 1.05772 1.00315 1.22955 1.03513 0.93487 1.02932 0.88776 0.90053 0.89850 0.74838 0.84898 0.88067 0.87500 0.87317 0.87979 0.75822 0.91785 0.93759 0.92446 0.91134 0.89446 0.89248 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.36 9.96 36.01 0.36 -1.00 16 2 C 0.20 3.15 6.75 -83.19 -0.56 2.59 16 3 N -0.49 -7.55 11.95 32.62 0.39 -7.16 16 4 S 0.23 2.86 22.40 -107.50 -2.41 0.46 16 5 C 0.16 2.16 7.31 -14.44 -0.11 2.06 16 6 N -0.65 -7.31 5.70 -53.32 -0.30 -7.62 16 7 C 0.07 0.60 6.49 -67.94 -0.44 0.16 16 8 C -0.19 -1.27 10.46 -26.70 -0.28 -1.55 16 9 C -0.18 -1.18 10.46 -26.70 -0.28 -1.46 16 10 C -0.32 -5.10 5.63 -105.71 -0.60 -5.70 16 11 C 0.59 10.72 5.92 -12.83 -0.08 10.65 16 12 O -0.55 -11.80 17.12 5.20 0.09 -11.71 16 13 N -0.69 -12.71 5.47 -61.61 -0.34 -13.05 16 14 C 0.16 3.18 5.12 -4.04 -0.02 3.16 16 15 C -0.01 -0.30 0.81 -155.66 -0.13 -0.42 16 16 C -0.49 -12.56 9.19 -34.44 -0.32 -12.87 16 17 H 0.08 2.17 8.06 -52.49 -0.42 1.74 16 18 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 19 N -0.89 -25.81 13.96 55.43 0.77 -25.03 16 20 Si 0.88 20.86 24.95 -169.99 -4.24 16.62 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 23 H -0.25 -5.78 5.69 56.52 0.32 -5.45 16 24 C -0.18 -3.29 9.96 -26.70 -0.27 -3.56 16 25 C -0.19 -3.78 7.31 -26.70 -0.20 -3.98 16 26 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.08 1.31 7.40 -51.93 -0.38 0.93 16 29 H 0.41 4.81 8.56 -40.82 -0.35 4.46 16 30 H 0.13 0.96 7.12 -51.93 -0.37 0.59 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.41 7.31 8.32 -40.82 -0.34 6.97 16 36 H 0.06 1.45 7.06 -51.93 -0.37 1.08 16 37 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 41 H 0.09 1.86 7.13 -51.93 -0.37 1.49 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 365.61 15.07 5.51 5.51 Total: -1.00 -30.67 365.61 -9.57 -40.25 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -6.04 Total: 11.54 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -3.00 Total: -9.80 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.52 Total: -52.85 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.24 Total: 16.62 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.41 Total: 0.46 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.67 -9.57 -40.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590359290.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.587 kcal (2) G-P(sol) polarization free energy of solvation -30.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds