Wall clock time and date at job start Sat Apr 11 2020 00:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29359 * 121.48923 * 2 1 4 4 S 1.69445 * 108.09131 * 180.02562 * 3 2 1 5 5 C 1.72011 * 96.10846 * 359.80030 * 4 3 2 6 6 N 1.38030 * 127.36720 * 180.21597 * 5 4 3 7 7 C 1.46494 * 119.99745 * 0.13633 * 6 5 4 8 8 C 1.52998 * 117.49763 * 223.74679 * 7 6 5 9 9 C 1.52998 * 117.49796 * 155.08849 * 7 6 5 10 10 C 1.39094 * 105.27030 * 0.32890 * 5 4 3 11 11 C 1.46718 * 123.24959 * 179.88489 * 10 5 4 12 12 O 1.21690 * 120.00483 * 274.66004 * 11 10 5 13 13 N 1.34779 * 119.99882 * 94.65579 * 11 10 5 14 14 C 1.46500 * 120.00056 * 185.02641 * 13 11 10 15 15 C 1.53000 * 109.47111 * 175.05093 * 14 13 11 16 16 C 1.50703 * 115.55157 * 65.21064 * 15 14 13 17 17 H 1.07998 * 120.00176 * 264.82105 * 16 15 14 18 18 C 1.37882 * 119.99907 * 84.80990 * 16 15 14 19 19 N 1.31508 * 119.99990 * 184.67265 * 18 16 15 20 20 Si 1.86799 * 120.00068 * 4.67952 * 18 16 15 21 21 H 1.48507 * 109.47194 * 94.52117 * 20 18 16 22 22 H 1.48493 * 109.47147 * 214.52381 * 20 18 16 23 23 H 1.48501 * 109.47057 * 334.52787 * 20 18 16 24 24 C 1.52994 * 117.49882 * 279.53923 * 15 14 13 25 25 C 1.52999 * 117.50030 * 210.88045 * 15 14 13 26 26 H 1.09001 * 109.47250 * 269.97357 * 1 2 3 27 27 H 1.08999 * 109.47141 * 29.97940 * 1 2 3 28 28 H 1.09003 * 109.46685 * 149.98167 * 1 2 3 29 29 H 0.96997 * 119.99664 * 180.13856 * 6 5 4 30 30 H 1.08998 * 115.55110 * 9.41859 * 7 6 5 31 31 H 1.08997 * 117.50259 * 359.97438 * 8 7 6 32 32 H 1.09004 * 117.50251 * 145.02358 * 8 7 6 33 33 H 1.09005 * 117.49842 * 214.97583 * 9 7 6 34 34 H 1.09003 * 117.49899 * 0.02562 * 9 7 6 35 35 H 0.97004 * 119.99894 * 4.74701 * 13 11 10 36 36 H 1.09004 * 109.47041 * 295.04899 * 14 13 11 37 37 H 1.08997 * 109.47229 * 55.05144 * 14 13 11 38 38 H 0.97000 * 120.00469 * 180.02562 * 19 18 16 39 39 H 1.08998 * 117.49875 * 0.02562 * 24 15 14 40 40 H 1.09003 * 117.49918 * 145.02095 * 24 15 14 41 41 H 1.08998 * 117.50196 * 214.98538 * 25 15 14 42 42 H 1.09004 * 117.49869 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1827 1.1031 0.0000 4 16 3.8310 0.7105 -0.0007 5 6 3.6128 -0.9957 0.0049 6 7 4.5946 -1.9659 0.0110 7 6 6.0073 -1.5782 0.0162 8 6 6.9520 -2.3385 -0.9168 9 6 7.0119 -2.5771 0.5940 10 6 2.2353 -1.1889 -0.0005 11 6 1.6091 -2.5157 -0.0007 12 8 1.4312 -3.1045 -1.0506 13 7 1.2308 -3.0824 1.1622 14 6 0.7073 -4.4506 1.1741 15 6 0.4711 -4.8938 2.6193 16 6 -0.5961 -4.1354 3.3656 17 1 -0.3255 -3.2993 3.9934 18 6 -1.9181 -4.5088 3.2468 19 7 -2.8581 -3.7924 3.8234 20 14 -2.3738 -6.0324 2.2668 21 1 -2.4855 -7.1955 3.1834 22 1 -3.6748 -5.8121 1.5857 23 1 -1.3231 -6.3010 1.2523 24 6 1.6840 -5.3761 3.4174 25 6 0.6342 -6.3814 2.9377 26 1 -0.3634 -0.0005 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8899 -0.5141 29 1 4.3492 -2.9043 0.0117 30 1 6.2033 -0.5179 0.1759 31 1 6.5225 -3.1274 -1.5342 32 1 7.7697 -1.7785 -1.3706 33 1 7.8690 -2.1739 1.1335 34 1 6.6217 -3.5229 0.9699 35 1 1.3091 -2.5858 1.9918 36 1 -0.2340 -4.4842 0.6254 37 1 1.4271 -5.1192 0.7021 38 1 -3.7881 -4.0553 3.7402 39 1 2.6503 -5.3773 2.9131 40 1 1.7099 -5.1452 4.4824 41 1 -0.0303 -6.8115 3.6871 42 1 0.9092 -7.0445 2.1174 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590359290.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:49 Heat of formation + Delta-G solvation = 30.451623 kcal Electronic energy + Delta-G solvation = -24836.954582 eV Core-core repulsion = 21330.111819 eV Total energy + Delta-G solvation = -3506.842763 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.29937 -39.55479 -38.97657 -38.47826 -35.21839 -34.95584 -34.20472 -30.88870 -30.53667 -28.41731 -27.15954 -24.55169 -23.42500 -23.34526 -23.29768 -22.02041 -21.15692 -20.43860 -19.45098 -18.55317 -18.17087 -17.38818 -17.03806 -16.80353 -16.37049 -15.83941 -15.67432 -15.55075 -15.41770 -14.76568 -14.58728 -14.35093 -14.18601 -14.09269 -13.79831 -13.67883 -13.39965 -13.07582 -12.93336 -12.72622 -12.46424 -12.31439 -12.20733 -11.99386 -11.81879 -11.53374 -11.45265 -11.21720 -11.04699 -10.95904 -10.63934 -10.31855 -9.93607 -9.59890 -8.85783 -8.28074 -6.34449 -0.17548 0.07556 0.79938 1.19424 1.34588 1.41619 1.51319 1.57067 1.85970 2.37605 2.39280 2.84566 3.07301 3.27188 3.63268 3.67544 3.91328 3.94229 3.96273 4.06631 4.21661 4.33782 4.35465 4.42520 4.51605 4.52577 4.61403 4.65506 4.74994 4.83977 4.86538 4.99188 5.08699 5.10414 5.17347 5.29598 5.47418 5.53143 5.60136 5.70576 5.75416 6.02871 6.30029 6.63506 6.75026 7.23261 7.36261 8.86379 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.004205 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.931035 B = 6656.541072 C = 7874.604554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.192 3.808 3 N -0.520 5.520 4 S 0.288 5.712 5 C 0.167 3.833 6 N -0.645 5.645 7 C 0.047 3.953 8 C -0.181 4.181 9 C -0.170 4.170 10 C -0.353 4.353 11 C 0.598 3.402 12 O -0.585 6.585 13 N -0.688 5.688 14 C 0.165 3.835 15 C -0.039 4.039 16 C -0.479 4.479 17 H 0.043 0.957 18 C 0.029 3.971 19 N -0.942 5.942 20 Si 0.926 3.074 21 H -0.272 1.272 22 H -0.304 1.304 23 H -0.235 1.235 24 C -0.152 4.152 25 C -0.189 4.189 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.411 0.589 30 H 0.145 0.855 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.099 0.901 35 H 0.408 0.592 36 H 0.036 0.964 37 H 0.062 0.938 38 H 0.264 0.736 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.231 3.955 -7.324 22.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.016 3.984 3 N -0.342 5.342 4 S 0.434 5.566 5 C -0.073 4.073 6 N -0.271 5.271 7 C -0.058 4.058 8 C -0.220 4.220 9 C -0.208 4.208 10 C -0.377 4.377 11 C 0.382 3.618 12 O -0.466 6.466 13 N -0.336 5.336 14 C 0.041 3.959 15 C -0.041 4.041 16 C -0.516 4.516 17 H 0.061 0.939 18 C -0.169 4.169 19 N -0.581 5.581 20 Si 0.752 3.248 21 H -0.197 1.197 22 H -0.231 1.231 23 H -0.157 1.157 24 C -0.189 4.189 25 C -0.227 4.227 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.085 0.915 29 H 0.249 0.751 30 H 0.162 0.838 31 H 0.112 0.888 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.117 0.883 35 H 0.243 0.757 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.121 0.879 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 21.954 5.626 -8.010 24.038 hybrid contribution -2.145 -2.482 0.247 3.290 sum 19.810 3.144 -7.762 21.507 Atomic orbital electron populations 1.20635 0.86287 1.03953 1.04272 1.20887 0.98699 0.86626 0.92210 1.76225 0.99875 1.25033 1.33114 1.83557 1.10690 0.89692 1.72702 1.23264 0.90787 0.99210 0.94001 1.43358 1.02726 1.06209 1.74799 1.22139 0.76345 0.99092 1.08206 1.23597 1.01625 1.03181 0.93581 1.23540 1.00526 1.00209 0.96507 1.19383 0.91615 0.95152 1.31581 1.17361 0.77215 0.84100 0.83118 1.90743 1.57697 1.65550 1.32632 1.45933 1.62265 1.15973 1.09436 1.20932 0.96780 0.82037 0.96144 1.19448 0.98041 0.94332 0.92235 1.20317 0.89978 1.14600 1.26722 0.93893 1.25677 0.96422 0.99063 0.95765 1.70020 1.00921 1.40664 1.46503 0.86076 0.77657 0.80664 0.80427 1.19711 1.23135 1.15728 1.22858 0.92986 1.03079 0.99976 1.23021 1.03659 0.92580 1.03400 0.89216 0.88514 0.91547 0.75139 0.83800 0.88818 0.85531 0.85298 0.88300 0.75653 0.94541 0.91975 0.92713 0.87947 0.89790 0.90362 0.88297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.74 9.96 71.24 0.71 -2.03 16 2 C 0.19 6.09 6.75 43.21 0.29 6.38 16 3 N -0.52 -15.67 11.95 -50.71 -0.61 -16.28 16 4 S 0.29 6.65 22.40 -56.49 -1.27 5.39 16 5 C 0.17 4.28 7.31 83.92 0.61 4.89 16 6 N -0.64 -13.07 5.70 -322.62 -1.84 -14.91 16 7 C 0.05 0.63 6.49 44.99 0.29 0.92 16 8 C -0.18 -1.83 10.46 30.62 0.32 -1.51 16 9 C -0.17 -1.61 10.46 30.62 0.32 -1.29 16 10 C -0.35 -11.26 5.63 -20.57 -0.12 -11.37 16 11 C 0.60 21.88 5.92 86.46 0.51 22.39 16 12 O -0.59 -25.18 17.12 -4.32 -0.07 -25.26 16 13 N -0.69 -25.23 5.47 -467.04 -2.56 -27.79 16 14 C 0.17 6.55 5.12 86.38 0.44 7.00 16 15 C -0.04 -1.63 0.81 -52.93 -0.04 -1.67 16 16 C -0.48 -24.86 9.19 25.60 0.24 -24.62 16 17 H 0.04 2.48 8.06 -2.91 -0.02 2.45 16 18 C 0.03 1.61 5.47 84.66 0.46 2.07 16 19 N -0.94 -56.56 13.96 21.45 0.30 -56.26 16 20 Si 0.93 43.21 24.95 68.60 1.71 44.92 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 23 H -0.23 -10.05 5.69 99.48 0.57 -9.49 16 24 C -0.15 -5.17 9.96 30.61 0.30 -4.86 16 25 C -0.19 -6.95 7.31 30.62 0.22 -6.72 16 26 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.07 2.20 7.40 -2.39 -0.02 2.19 16 29 H 0.41 8.79 8.56 -92.71 -0.79 7.99 16 30 H 0.14 1.59 7.12 -2.39 -0.02 1.57 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.13 0.80 8.14 -2.38 -0.02 0.79 16 33 H 0.13 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.41 14.77 8.32 -92.71 -0.77 14.00 16 36 H 0.04 1.64 7.06 -2.38 -0.02 1.62 16 37 H 0.06 2.25 8.09 -2.39 -0.02 2.23 16 38 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 40 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 41 H 0.08 3.07 7.13 -2.39 -0.02 3.06 16 42 H 0.10 3.17 8.14 -2.38 -0.02 3.15 16 Total: -1.00 -67.87 365.61 -0.40 -68.27 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: -0.64 Total: 32.35 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 4.57 Total: -10.42 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -4.70 Total: -115.24 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.07 Total: -25.26 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.71 Total: 44.92 kcal Atomic # 16 Polarization: 6.65 SS G_CDS: -1.27 Total: 5.39 kcal Total: -67.87 -0.40 -68.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590359290.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.723 kcal (2) G-P(sol) polarization free energy of solvation -67.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds