Wall clock time and date at job start Sat Apr 11 2020 00:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 119.99821 * 2 1 4 4 H 1.07998 * 120.00216 * 321.76408 * 3 2 1 5 5 C 1.38809 * 119.99970 * 141.76091 * 3 2 1 6 6 N 1.31619 * 119.99931 * 157.46007 * 5 3 2 7 7 Si 1.86800 * 120.00121 * 337.46750 * 5 3 2 8 8 H 1.48500 * 109.47364 * 95.65614 * 7 5 3 9 9 H 1.48499 * 109.46898 * 215.65785 * 7 5 3 10 10 H 1.48504 * 109.46921 * 335.65390 * 7 5 3 11 11 C 1.46493 * 119.99750 * 179.97438 * 2 1 3 12 12 N 1.46498 * 109.47351 * 90.00386 * 11 2 1 13 13 C 1.33790 * 124.18075 * 89.96730 * 12 11 2 14 14 O 1.21542 * 123.77206 * 0.04489 * 13 12 11 15 15 N 1.34526 * 112.46223 * 180.02562 * 13 12 11 16 16 C 1.47319 * 106.61701 * 0.02562 * 15 13 12 17 17 C 1.52996 * 110.59863 * 118.67708 * 16 15 13 18 18 C 1.50701 * 110.59742 * 241.47361 * 16 15 13 19 19 C 1.38213 * 120.01269 * 356.46123 * 18 16 15 20 20 C 1.38226 * 120.02528 * 180.02562 * 19 18 16 21 21 C 1.38266 * 120.05099 * 359.97438 * 20 19 18 22 22 C 1.38177 * 120.02460 * 359.97438 * 21 20 19 23 23 C 1.38432 * 120.01000 * 176.74610 * 18 16 15 24 24 F 1.35096 * 120.03150 * 359.97438 * 23 18 16 25 25 C 1.35117 * 124.13454 * 270.11702 * 12 11 2 26 26 O 1.21241 * 127.33553 * 359.97049 * 25 12 11 27 27 H 1.09004 * 109.47494 * 265.02598 * 1 2 3 28 28 H 1.08997 * 109.47375 * 25.02455 * 1 2 3 29 29 H 1.08999 * 109.47292 * 145.02491 * 1 2 3 30 30 H 0.97001 * 119.99627 * 180.02562 * 6 5 3 31 31 H 1.08999 * 109.47404 * 329.99869 * 11 2 1 32 32 H 1.09002 * 109.46803 * 209.99850 * 11 2 1 33 33 H 0.96999 * 126.69615 * 180.02562 * 15 13 12 34 34 H 1.09004 * 109.46939 * 182.83102 * 17 16 15 35 35 H 1.09001 * 109.47335 * 302.82941 * 17 16 15 36 36 H 1.09001 * 109.47235 * 62.83641 * 17 16 15 37 37 H 1.08003 * 119.99062 * 0.05451 * 19 18 16 38 38 H 1.08007 * 119.97277 * 179.97438 * 20 19 18 39 39 H 1.08001 * 119.98569 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.00756 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7835 2.0209 -0.5788 5 6 3.3144 1.3149 0.7440 6 7 4.1986 2.2372 0.4278 7 14 3.6270 0.1795 2.1940 8 1 4.4705 -0.9617 1.7563 9 1 4.3271 0.9292 3.2678 10 1 2.3320 -0.3316 2.7107 11 6 2.1974 -1.2687 0.0006 12 7 2.4417 -1.6922 -1.3804 13 6 3.5253 -1.3557 -2.0893 14 8 4.4249 -0.6607 -1.6594 15 7 3.5081 -1.8727 -3.3311 16 6 2.2578 -2.6428 -3.4496 17 6 1.3737 -2.0667 -4.5574 18 6 2.5536 -4.0971 -3.7117 19 6 3.8594 -4.5175 -3.8802 20 6 4.1310 -5.8512 -4.1211 21 6 3.0970 -6.7663 -4.1934 22 6 1.7908 -6.3484 -4.0242 23 6 1.5170 -5.0113 -3.7897 24 9 0.2399 -4.6007 -3.6304 25 6 1.5985 -2.4687 -2.0957 26 8 0.5378 -2.9305 -1.7330 27 1 -0.3634 -0.0891 1.0238 28 1 -0.3634 0.9312 -0.4347 29 1 -0.3634 -0.8421 -0.5891 30 1 5.0126 2.3270 0.9476 31 1 1.6084 -2.0281 0.5147 32 1 3.1499 -1.1381 0.5143 33 1 4.1865 -1.7605 -4.0152 34 1 0.4338 -2.6175 -4.5956 35 1 1.1707 -1.0158 -4.3508 36 1 1.8864 -2.1564 -5.5151 37 1 4.6679 -3.8038 -3.8231 38 1 5.1517 -6.1788 -4.2531 39 1 3.3104 -7.8082 -4.3813 40 1 0.9834 -7.0635 -4.0803 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725771676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:35 Heat of formation + Delta-G solvation = -36.829856 kcal Electronic energy + Delta-G solvation = -28626.401724 eV Core-core repulsion = 24550.428242 eV Total energy + Delta-G solvation = -4075.973483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.128 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -49.86490 -43.50365 -40.05467 -39.54546 -38.03098 -37.28018 -35.37086 -33.70358 -32.58477 -31.64716 -30.36425 -28.80424 -27.88864 -25.83960 -24.20829 -23.81805 -23.46147 -22.36475 -21.44604 -19.47564 -18.80639 -18.60759 -17.97026 -17.76922 -17.36575 -17.01542 -16.58887 -16.48781 -16.37225 -16.16575 -15.76258 -15.30759 -15.11980 -15.00044 -14.87861 -14.78636 -14.44084 -13.96445 -13.93256 -13.57106 -13.42430 -13.33724 -13.15343 -12.76878 -12.63915 -12.60761 -12.28473 -12.05268 -11.84831 -11.82696 -11.21637 -10.93300 -10.70233 -10.58115 -10.00841 -9.66031 -9.12792 -8.26574 -5.72497 0.03323 0.21407 0.61750 1.23182 1.27185 1.32403 1.43365 2.04774 2.12052 2.35351 2.57721 2.88932 3.01061 3.14834 3.30043 3.31428 3.63947 3.84049 3.84960 4.11515 4.17815 4.35517 4.37561 4.43099 4.51946 4.56619 4.63175 4.68910 4.81554 4.91511 4.96769 4.99266 5.07742 5.15385 5.32370 5.43410 5.80370 5.85947 5.89579 6.05253 6.19191 6.38766 6.75493 7.23287 7.45139 7.83226 8.91755 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.019545 B = 0.004846 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.265846 B = 5776.548677 C = 6209.328453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.600 5.600 3 C -0.286 4.286 4 H 0.040 0.960 5 C 0.017 3.983 6 N -0.921 5.921 7 Si 0.919 3.081 8 H -0.280 1.280 9 H -0.293 1.293 10 H -0.246 1.246 11 C 0.340 3.660 12 N -0.585 5.585 13 C 0.693 3.307 14 O -0.559 6.559 15 N -0.705 5.705 16 C 0.174 3.826 17 C -0.141 4.141 18 C -0.145 4.145 19 C -0.081 4.081 20 C -0.125 4.125 21 C -0.075 4.075 22 C -0.157 4.157 23 C 0.099 3.901 24 F -0.137 7.137 25 C 0.525 3.475 26 O -0.480 6.480 27 H 0.035 0.965 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.264 0.736 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.447 0.553 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.107 0.893 37 H 0.140 0.860 38 H 0.161 0.839 39 H 0.170 0.830 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.361 -21.506 -13.182 25.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.323 5.323 3 C -0.415 4.415 4 H 0.058 0.942 5 C -0.183 4.183 6 N -0.561 5.561 7 Si 0.746 3.254 8 H -0.207 1.207 9 H -0.220 1.220 10 H -0.170 1.170 11 C 0.133 3.867 12 N -0.337 5.337 13 C 0.393 3.607 14 O -0.432 6.432 15 N -0.372 5.372 16 C 0.082 3.918 17 C -0.199 4.199 18 C -0.147 4.147 19 C -0.099 4.099 20 C -0.143 4.143 21 C -0.093 4.093 22 C -0.176 4.176 23 C 0.079 3.921 24 F -0.115 7.115 25 C 0.312 3.688 26 O -0.351 6.351 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.295 0.705 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.125 0.875 37 H 0.157 0.843 38 H 0.179 0.821 39 H 0.187 0.813 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.449 -21.170 -12.523 24.719 hybrid contribution 0.421 0.581 0.587 0.927 sum -2.028 -20.590 -11.936 23.885 Atomic orbital electron populations 1.21311 0.81415 1.00287 0.99478 1.44674 1.02925 1.01590 1.83158 1.18444 1.07407 0.90774 1.24880 0.94226 1.25869 0.95702 0.97456 0.99310 1.69966 1.08749 1.37674 1.39705 0.86208 0.78979 0.79112 0.81057 1.20734 1.21993 1.16972 1.21893 0.97162 0.87803 0.79829 1.48566 1.20566 1.47078 1.17450 1.16301 0.82504 0.79559 0.82322 1.91083 1.38669 1.40009 1.73447 1.45508 1.23833 1.54005 1.13858 1.20033 0.85933 0.90905 0.94903 1.22043 0.99702 1.01230 0.96951 1.19551 0.95085 0.91773 1.08307 1.21106 0.94165 0.97829 0.96849 1.21583 1.01516 0.91812 0.99416 1.21530 0.90596 1.01774 0.95360 1.21474 1.00096 0.92944 1.03037 1.17793 0.78279 0.93860 1.02134 1.91534 1.36166 1.91035 1.92786 1.21257 0.83889 0.76496 0.87174 1.90722 1.19725 1.48965 1.75660 0.94645 0.93391 0.93361 0.92684 0.88167 0.91392 0.70525 0.89514 0.92117 0.87456 0.84260 0.82127 0.81293 0.82587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.96 10.70 127.77 1.37 6.33 16 2 N -0.60 -29.98 2.70 -738.78 -2.00 -31.98 16 3 C -0.29 -16.89 9.88 84.03 0.83 -16.06 16 4 H 0.04 2.60 8.06 -2.91 -0.02 2.58 16 5 C 0.02 1.03 5.29 84.86 0.45 1.48 16 6 N -0.92 -59.37 13.97 21.65 0.30 -59.07 16 7 Si 0.92 46.83 25.08 68.60 1.72 48.55 16 8 H -0.28 -14.12 6.68 99.48 0.66 -13.46 16 9 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 10 H -0.25 -11.59 7.11 99.48 0.71 -10.89 16 11 C 0.34 15.76 5.09 170.96 0.87 16.63 16 12 N -0.59 -24.75 2.85 -783.70 -2.23 -26.98 16 13 C 0.69 29.30 8.62 179.44 1.55 30.85 16 14 O -0.56 -29.39 17.48 -3.85 -0.07 -29.46 16 15 N -0.70 -20.87 4.65 -443.23 -2.06 -22.93 16 16 C 0.17 4.87 1.03 2.24 0.00 4.87 16 17 C -0.14 -3.36 8.77 71.98 0.63 -2.73 16 18 C -0.14 -3.37 4.83 -19.82 -0.10 -3.47 16 19 C -0.08 -1.48 9.38 22.26 0.21 -1.27 16 20 C -0.13 -1.59 10.04 22.27 0.22 -1.37 16 21 C -0.07 -0.85 10.04 22.26 0.22 -0.63 16 22 C -0.16 -2.50 10.03 22.31 0.22 -2.27 16 23 C 0.10 2.26 6.82 22.38 0.15 2.42 16 24 F -0.14 -3.74 13.28 44.97 0.60 -3.15 16 25 C 0.53 19.21 6.79 87.89 0.60 19.80 16 26 O -0.48 -18.57 15.12 -2.91 -0.04 -18.62 16 27 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.05 1.98 8.00 -2.39 -0.02 1.96 16 29 H 0.05 1.89 7.37 -2.39 -0.02 1.87 16 30 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 31 H 0.10 4.11 7.95 -2.39 -0.02 4.10 16 32 H 0.07 3.47 3.10 -2.39 -0.01 3.46 16 33 H 0.45 10.14 8.45 -92.71 -0.78 9.36 16 34 H 0.09 2.07 6.44 -2.38 -0.02 2.06 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.11 1.85 8.14 -2.39 -0.02 1.84 16 37 H 0.14 2.36 6.65 -2.91 -0.02 2.34 16 38 H 0.16 1.12 8.06 -2.91 -0.02 1.09 16 39 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 40 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -79.59 336.28 3.72 -75.87 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.27 Total: 13.19 kcal Atomic # 6 Polarization: 47.34 SS G_CDS: 7.23 Total: 54.57 kcal Atomic # 7 Polarization: -134.97 SS G_CDS: -5.99 Total: -140.96 kcal Atomic # 8 Polarization: -47.97 SS G_CDS: -0.11 Total: -48.08 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.60 Total: -3.15 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.72 Total: 48.55 kcal Total: -79.59 3.72 -75.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725771676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.037 kcal (2) G-P(sol) polarization free energy of solvation -79.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds