Wall clock time and date at job start Sat Apr 11 2020 00:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.06030 * 2 1 4 4 C 1.54266 * 110.03212 * 238.58010 * 2 1 3 5 5 C 1.54891 * 104.19804 * 217.10545 * 4 2 1 6 6 C 1.54887 * 102.74722 * 37.94498 * 5 4 2 7 7 C 1.53878 * 110.03284 * 121.41813 * 2 1 3 8 8 C 1.53000 * 110.03368 * 359.97438 * 7 2 1 9 9 C 1.50699 * 110.02785 * 238.56993 * 7 2 1 10 10 O 1.21283 * 120.00430 * 1.37384 * 9 7 2 11 11 N 1.34783 * 119.99865 * 181.38169 * 9 7 2 12 12 C 1.39264 * 120.00268 * 174.43146 * 11 9 7 13 13 C 1.39473 * 119.83855 * 335.08480 * 12 11 9 14 14 C 1.36372 * 120.18123 * 179.97438 * 13 12 11 15 15 C 1.40886 * 119.84779 * 0.02562 * 14 13 12 16 16 C 1.41151 * 120.15930 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99840 * 34.92612 * 16 15 14 18 18 C 1.39906 * 120.00372 * 214.92999 * 16 15 14 19 19 N 1.30869 * 119.99411 * 355.18789 * 18 16 15 20 20 Si 1.86795 * 120.00160 * 175.19191 * 18 16 15 21 21 H 1.48501 * 109.46922 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47318 * 119.99659 * 20 18 16 23 23 H 1.48499 * 109.46951 * 239.99807 * 20 18 16 24 24 C 1.40840 * 119.68575 * 359.97438 * 15 14 13 25 25 C 1.36471 * 119.81851 * 359.73831 * 24 15 14 26 26 Cl 1.73604 * 119.93316 * 180.27492 * 25 24 15 27 27 H 1.08999 * 109.46899 * 298.58378 * 1 2 3 28 28 H 1.09000 * 109.47177 * 58.58249 * 1 2 3 29 29 H 1.09002 * 109.46879 * 178.58817 * 1 2 3 30 30 H 1.09002 * 110.48482 * 98.42448 * 4 2 1 31 31 H 1.09002 * 110.59804 * 335.83934 * 4 2 1 32 32 H 1.09001 * 110.75434 * 279.62926 * 5 4 2 33 33 H 1.09003 * 110.75194 * 156.25696 * 5 4 2 34 34 H 1.09002 * 110.48281 * 203.38129 * 6 5 4 35 35 H 1.08995 * 110.48826 * 80.73726 * 6 5 4 36 36 H 1.08998 * 109.47170 * 178.62235 * 8 7 2 37 37 H 1.08998 * 109.47019 * 298.62908 * 8 7 2 38 38 H 1.09001 * 109.47095 * 58.62101 * 8 7 2 39 39 H 0.96999 * 119.99747 * 354.42874 * 11 9 7 40 40 H 1.08004 * 119.90958 * 0.02562 * 13 12 11 41 41 H 1.07997 * 120.07754 * 180.02562 * 14 13 12 42 42 H 0.97004 * 119.99855 * 179.97438 * 19 18 16 43 43 H 1.08001 * 120.09380 * 179.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0584 -0.7555 -1.2368 5 6 3.3137 -1.5008 -0.7191 6 6 2.8874 -1.9407 0.7035 7 6 2.0571 -0.7536 1.2337 8 6 0.8862 -1.2664 2.0745 9 6 2.9275 0.1565 2.0614 10 8 3.0959 1.3086 1.7219 11 7 3.5191 -0.3100 3.1791 12 6 4.4145 0.4937 3.8803 13 6 5.0961 1.5146 3.2182 14 6 5.9741 2.3061 3.8982 15 6 6.1927 2.0905 5.2732 16 6 7.1004 2.9055 5.9833 17 1 7.1999 3.9506 5.7299 18 6 7.8712 2.3594 7.0153 19 7 7.6840 1.1182 7.3853 20 14 9.1674 3.4021 7.8650 21 1 9.1815 4.7604 7.2649 22 1 8.8507 3.5031 9.3124 23 1 10.5008 2.7714 7.6929 24 6 5.5012 1.0579 5.9358 25 6 4.6211 0.2775 5.2438 26 17 3.7618 -0.9915 6.0592 27 1 -0.3633 0.4917 0.9024 28 1 -0.3633 0.5357 -0.8770 29 1 -0.3633 -1.0274 -0.0253 30 1 2.3296 -0.0537 -2.0255 31 1 1.3151 -1.4660 -1.5987 32 1 4.1710 -0.8291 -0.6751 33 1 3.5324 -2.3680 -1.3423 34 1 3.7637 -2.1037 1.3309 35 1 2.2772 -2.8426 0.6572 36 1 1.2694 -1.8193 2.9321 37 1 0.2916 -0.4219 2.4227 38 1 0.2633 -1.9235 1.4675 39 1 3.3212 -1.2054 3.4950 40 1 4.9275 1.6793 2.1642 41 1 6.5007 3.0964 3.3838 42 1 8.2186 0.7394 8.1006 43 1 5.6640 0.8866 6.9897 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411019689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:05 Heat of formation + Delta-G solvation = -42.293682 kcal Electronic energy + Delta-G solvation = -25087.171977 eV Core-core repulsion = 21542.838284 eV Total energy + Delta-G solvation = -3544.333693 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.67482 -38.42721 -36.97164 -35.54426 -34.50772 -33.12578 -31.89972 -31.02385 -29.44798 -28.85531 -25.67776 -25.52348 -24.76096 -22.25823 -21.43672 -20.91672 -19.95316 -18.31868 -17.55592 -17.20679 -16.20270 -15.52661 -15.33450 -15.11502 -14.39082 -14.13679 -14.00662 -13.74000 -13.63560 -13.35492 -12.98206 -12.85962 -12.58370 -12.31707 -11.94753 -11.82641 -11.67226 -11.40532 -11.28930 -11.09047 -11.07855 -10.95370 -10.81248 -10.74062 -10.68087 -10.48662 -10.36848 -10.32041 -10.08885 -9.88489 -9.46889 -9.16174 -8.79585 -7.56708 -6.97242 -6.72604 -4.45429 2.33774 2.82285 2.97144 3.06121 3.11151 3.13367 3.30191 3.65520 3.91235 4.38460 4.49108 4.58421 4.71438 5.08801 5.15216 5.22704 5.28035 5.37747 5.41516 5.44665 5.47532 5.67194 5.72882 5.80919 5.84582 5.87372 5.94196 6.00552 6.16072 6.18689 6.23296 6.26798 6.47515 6.52275 6.64448 6.87069 7.01060 7.14619 7.31458 7.57020 7.65866 7.87667 8.08717 8.15903 8.43262 8.66814 8.78614 8.81988 10.18257 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.022514 B = 0.003374 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.385015 B = 8296.057624 C = 8933.552605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.098 0.902 4 C -0.117 4.117 5 C -0.126 4.126 6 C -0.114 4.114 7 C -0.079 4.079 8 C -0.140 4.140 9 C 0.514 3.486 10 O -0.529 6.529 11 N -0.647 5.647 12 C 0.020 3.980 13 C -0.086 4.086 14 C -0.198 4.198 15 C 0.105 3.895 16 C -0.456 4.456 17 H 0.081 0.919 18 C 0.069 3.931 19 N -0.806 5.806 20 Si 0.918 3.082 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.133 4.133 25 C -0.028 4.028 26 Cl -0.121 7.121 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.398 0.602 40 H 0.125 0.875 41 H 0.103 0.897 42 H 0.280 0.720 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.585 -7.338 -9.927 15.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 H 0.116 0.884 4 C -0.154 4.154 5 C -0.163 4.163 6 C -0.152 4.152 7 C -0.083 4.083 8 C -0.197 4.197 9 C 0.301 3.699 10 O -0.406 6.406 11 N -0.289 5.289 12 C -0.074 4.074 13 C -0.106 4.106 14 C -0.218 4.218 15 C 0.102 3.898 16 C -0.487 4.487 17 H 0.099 0.901 18 C -0.147 4.147 19 N -0.433 5.433 20 Si 0.742 3.258 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.153 4.153 25 C -0.056 4.056 26 Cl -0.092 7.092 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.234 0.766 40 H 0.143 0.857 41 H 0.121 0.879 42 H 0.091 0.909 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.458 -6.813 -9.941 15.320 hybrid contribution 0.529 -0.303 0.799 1.004 sum -8.929 -7.115 -9.143 14.627 Atomic orbital electron populations 1.21967 0.95055 1.01412 1.01631 1.21801 0.95499 1.01297 0.92041 0.88358 1.22419 0.97044 0.98743 0.97200 1.22487 0.98208 0.99943 0.95664 1.22497 0.99358 0.96461 0.96883 1.21405 0.95509 0.95508 0.95842 1.21996 0.97081 1.01420 0.99233 1.20349 0.80159 0.88102 0.81331 1.90600 1.61669 1.18187 1.70110 1.43009 1.42674 1.17451 1.25812 1.16999 1.00606 1.00566 0.89237 1.20524 0.95450 0.95026 0.99613 1.20932 1.03340 1.03091 0.94436 1.17606 0.90087 0.91539 0.90606 1.19532 1.18119 0.97432 1.13584 0.90112 1.25918 0.98095 0.95168 0.95488 1.69744 1.35856 1.13313 1.24380 0.86100 0.79931 0.80625 0.79107 1.18482 1.19887 1.19892 1.21211 0.95436 0.97493 1.01163 1.20401 1.00676 0.94338 0.90158 1.98248 1.77667 1.53351 1.79983 0.92383 0.92944 0.92564 0.91687 0.91703 0.91255 0.91449 0.91121 0.90585 0.92495 0.91712 0.91175 0.76643 0.85724 0.87902 0.90892 0.83805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 7.89 37.16 0.29 -1.11 16 2 C -0.09 -1.04 3.10 -89.50 -0.28 -1.32 16 3 H 0.10 1.45 6.39 -51.93 -0.33 1.12 16 4 C -0.12 -1.17 6.36 -25.07 -0.16 -1.33 16 5 C -0.13 -1.32 6.91 -24.74 -0.17 -1.49 16 6 C -0.11 -1.25 5.88 -25.07 -0.15 -1.39 16 7 C -0.08 -0.99 0.78 -154.54 -0.12 -1.11 16 8 C -0.14 -1.49 7.09 37.16 0.26 -1.22 16 9 C 0.51 8.83 6.24 -10.98 -0.07 8.76 16 10 O -0.53 -10.89 12.34 5.55 0.07 -10.83 16 11 N -0.65 -11.65 4.72 -9.71 -0.05 -11.69 16 12 C 0.02 0.44 6.44 -83.52 -0.54 -0.10 16 13 C -0.09 -2.00 8.64 -39.79 -0.34 -2.34 16 14 C -0.20 -4.82 9.74 -39.25 -0.38 -5.20 16 15 C 0.10 2.72 5.55 -106.81 -0.59 2.12 16 16 C -0.46 -11.76 9.02 -37.85 -0.34 -12.10 16 17 H 0.08 2.00 7.85 -52.49 -0.41 1.59 16 18 C 0.07 1.69 5.42 -17.34 -0.09 1.60 16 19 N -0.81 -20.31 10.59 55.55 0.59 -19.73 16 20 Si 0.92 18.46 29.56 -169.99 -5.03 13.44 16 21 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 23 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 24 C -0.13 -3.35 8.38 -39.24 -0.33 -3.68 16 25 C -0.03 -0.63 6.30 -39.72 -0.25 -0.88 16 26 Cl -0.12 -2.32 27.75 -51.86 -1.44 -3.76 16 27 H 0.06 0.60 6.78 -51.93 -0.35 0.25 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.47 6.68 -51.93 -0.35 0.12 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.55 7.84 -51.93 -0.41 0.15 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.84 7.53 -51.93 -0.39 0.45 16 35 H 0.08 0.68 7.85 -51.93 -0.41 0.27 16 36 H 0.06 0.59 7.50 -51.93 -0.39 0.20 16 37 H 0.06 0.73 6.82 -51.93 -0.35 0.38 16 38 H 0.07 0.60 6.65 -51.93 -0.35 0.25 16 39 H 0.40 6.30 7.02 -40.82 -0.29 6.01 16 40 H 0.13 2.85 5.76 -52.48 -0.30 2.55 16 41 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 42 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 43 H 0.14 3.80 6.13 -52.49 -0.32 3.48 16 LS Contribution 349.74 15.07 5.27 5.27 Total: -1.00 -27.52 349.74 -9.74 -37.26 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -5.90 Total: 10.85 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -3.26 Total: -20.81 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 0.54 Total: -31.42 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.07 Total: -10.83 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.44 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -1.44 Total: -3.76 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.52 -9.74 -37.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411019689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.036 kcal (2) G-P(sol) polarization free energy of solvation -27.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds