Wall clock time and date at job start Sat Apr 11 2020 00:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47067 * 2 1 4 4 C 1.52994 * 109.47676 * 120.00079 * 2 1 3 5 5 C 1.52998 * 109.47676 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47039 * 300.00398 * 5 4 2 7 7 C 1.53000 * 109.47305 * 59.99830 * 6 5 4 8 8 C 1.52998 * 109.47412 * 240.00504 * 2 1 3 9 9 H 1.09004 * 109.47000 * 299.99705 * 8 2 1 10 10 C 1.50704 * 109.47295 * 59.99477 * 8 2 1 11 11 O 1.21277 * 119.99716 * 0.02562 * 10 8 2 12 12 N 1.34777 * 119.99831 * 180.02562 * 10 8 2 13 13 C 1.39153 * 119.99629 * 185.15658 * 12 10 8 14 14 C 1.38616 * 120.21113 * 21.08048 * 13 12 10 15 15 C 1.38185 * 120.17055 * 180.02562 * 14 13 12 16 16 C 1.39003 * 120.60549 * 359.97438 * 15 14 13 17 17 Cl 1.73599 * 119.78985 * 180.02562 * 16 15 14 18 18 C 1.37550 * 120.41974 * 359.97438 * 16 15 14 19 19 C 1.40738 * 119.81118 * 0.02562 * 18 16 15 20 20 C 1.41067 * 120.29211 * 179.72146 * 19 18 16 21 21 H 1.08002 * 119.99874 * 211.80086 * 20 19 18 22 22 C 1.39950 * 119.99734 * 31.81190 * 20 19 18 23 23 N 1.30852 * 120.00492 * 14.98346 * 22 20 19 24 24 Si 1.86802 * 119.99830 * 194.98853 * 22 20 19 25 25 H 1.48495 * 109.46946 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47218 * 119.99554 * 24 22 20 27 27 H 1.48495 * 109.47110 * 239.99485 * 24 22 20 28 28 H 1.09004 * 109.46798 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47159 * 299.99575 * 1 2 3 30 30 H 1.08993 * 109.47288 * 59.99986 * 1 2 3 31 31 H 1.09004 * 109.46958 * 300.00262 * 4 2 1 32 32 H 1.08997 * 109.46937 * 59.99841 * 4 2 1 33 33 H 1.09004 * 109.46798 * 60.00255 * 5 4 2 34 34 H 1.08993 * 109.47288 * 179.97438 * 5 4 2 35 35 H 1.09000 * 109.47330 * 180.02562 * 6 5 4 36 36 H 1.09004 * 109.47209 * 299.99605 * 6 5 4 37 37 H 1.09004 * 109.47052 * 180.02562 * 7 6 5 38 38 H 1.08997 * 109.47308 * 60.00166 * 7 6 5 39 39 H 0.96994 * 120.00242 * 5.16162 * 12 10 8 40 40 H 1.07994 * 119.91308 * 359.97438 * 14 13 12 41 41 H 1.08004 * 119.69795 * 179.97438 * 15 14 13 42 42 H 1.08001 * 120.09450 * 180.02562 * 18 16 15 43 43 H 0.96996 * 120.00933 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 3.5701 -0.7207 1.2495 6 6 4.0806 -1.4414 0.0002 7 6 3.5706 -0.7201 -1.2490 8 6 2.0400 -0.7211 -1.2493 9 1 1.6768 -1.7488 -1.2493 10 6 1.5377 -0.0107 -2.4797 11 8 0.8407 0.9755 -2.3684 12 7 1.8629 -0.4714 -3.7038 13 6 1.4900 0.2435 -4.8380 14 6 1.1895 1.5934 -4.7440 15 6 0.8187 2.3024 -5.8707 16 6 0.7429 1.6748 -7.1087 17 17 0.2755 2.5860 -8.5104 18 6 1.0368 0.3365 -7.2302 19 6 1.4162 -0.4025 -6.0942 20 6 1.7142 -1.7768 -6.2062 21 1 1.5057 -2.4434 -5.3825 22 6 2.2802 -2.2762 -7.3847 23 7 2.8013 -1.4546 -8.2598 24 14 2.2915 -4.1159 -7.7088 25 1 1.6462 -4.8224 -6.5732 26 1 1.5444 -4.4029 -8.9597 27 1 3.6933 -4.5848 -7.8508 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6768 -0.2074 2.1392 32 1 1.6768 -1.7489 1.2491 33 1 3.9330 0.3072 1.2498 34 1 3.9334 -1.2341 2.1396 35 1 5.1706 -1.4414 0.0006 36 1 3.7177 -2.4693 -0.0001 37 1 3.9339 -1.2339 -2.1391 38 1 3.9335 0.3077 -1.2488 39 1 2.3568 -1.3013 -3.7943 40 1 1.2444 2.0921 -3.7877 41 1 0.5858 3.3538 -5.7887 42 1 0.9765 -0.1457 -8.1947 43 1 3.1932 -1.8007 -9.0767 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425599922.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:33 Heat of formation + Delta-G solvation = -66.440857 kcal Electronic energy + Delta-G solvation = -25083.934736 eV Core-core repulsion = 21538.553943 eV Total energy + Delta-G solvation = -3545.380793 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.69671 -39.73900 -38.40106 -37.18770 -35.56237 -35.35776 -33.30761 -32.22977 -31.64893 -29.87078 -27.55736 -27.07385 -24.63041 -23.57643 -22.74169 -21.97623 -21.08465 -20.51371 -19.33115 -18.47318 -17.73363 -17.15208 -16.38262 -16.17400 -15.93170 -15.41393 -15.30697 -15.01190 -14.97484 -14.70638 -14.36815 -14.13874 -13.77247 -13.50375 -13.43067 -13.24946 -13.12959 -12.85586 -12.74378 -12.54824 -12.41018 -12.26262 -12.16036 -12.04233 -11.93380 -11.74475 -11.47040 -11.33405 -11.28784 -11.07209 -10.94967 -10.84954 -10.09956 -9.44141 -8.79466 -8.50068 -6.37067 0.63643 0.91926 1.43164 1.48473 1.53464 1.56726 1.82501 2.21017 2.42956 2.70473 3.56167 3.63281 3.74532 3.82756 4.19047 4.26226 4.32792 4.46446 4.50821 4.52902 4.54575 4.60815 4.64289 4.82550 4.94735 4.96371 5.00027 5.04998 5.10114 5.19377 5.23223 5.23744 5.27486 5.35664 5.38871 5.43062 5.54188 5.58199 5.62843 5.69641 5.87720 5.96740 6.13359 6.46697 6.72403 6.83677 6.94772 7.41519 8.33516 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.011549 B = 0.004302 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.876282 B = 6507.081236 C = 8357.075385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.065 4.065 3 H 0.057 0.943 4 C -0.108 4.108 5 C -0.120 4.120 6 C -0.112 4.112 7 C -0.111 4.111 8 C -0.090 4.090 9 H 0.110 0.890 10 C 0.499 3.501 11 O -0.559 6.559 12 N -0.636 5.636 13 C 0.031 3.969 14 C -0.106 4.106 15 C -0.215 4.215 16 C -0.027 4.027 17 Cl -0.104 7.104 18 C -0.159 4.159 19 C 0.084 3.916 20 C -0.488 4.488 21 H 0.090 0.910 22 C 0.042 3.958 23 N -0.823 5.823 24 Si 0.979 3.021 25 H -0.252 1.252 26 H -0.273 1.273 27 H -0.267 1.267 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.413 0.587 40 H 0.135 0.865 41 H 0.118 0.882 42 H 0.109 0.891 43 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.830 -4.142 14.048 14.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.084 4.084 3 H 0.076 0.924 4 C -0.145 4.145 5 C -0.157 4.157 6 C -0.149 4.149 7 C -0.149 4.149 8 C -0.112 4.112 9 H 0.128 0.872 10 C 0.289 3.711 11 O -0.440 6.440 12 N -0.278 5.278 13 C -0.065 4.065 14 C -0.127 4.127 15 C -0.235 4.235 16 C -0.053 4.053 17 Cl -0.076 7.076 18 C -0.179 4.179 19 C 0.079 3.921 20 C -0.517 4.517 21 H 0.108 0.892 22 C -0.174 4.174 23 N -0.448 5.448 24 Si 0.800 3.200 25 H -0.175 1.175 26 H -0.199 1.199 27 H -0.191 1.191 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.251 0.749 40 H 0.152 0.848 41 H 0.136 0.864 42 H 0.127 0.873 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.465 -3.383 13.835 14.455 hybrid contribution 0.068 -0.554 -1.151 1.279 sum 2.533 -3.937 12.685 13.521 Atomic orbital electron populations 1.22009 0.95484 1.01624 1.02301 1.20855 0.95561 0.98828 0.93135 0.92446 1.21590 0.95859 1.00899 0.96198 1.21569 0.95168 1.00789 0.98214 1.21515 1.00930 0.99573 0.92929 1.21561 0.91742 1.01467 1.00096 1.21421 0.97804 1.00921 0.91013 0.87183 1.21466 0.79557 0.85065 0.85031 1.90501 1.38650 1.28199 1.86604 1.43082 1.54607 1.26134 1.03966 1.18054 1.09568 0.90973 0.87859 1.21073 1.00527 0.92669 0.98425 1.20435 1.12590 0.99730 0.90736 1.20838 1.04949 0.92502 0.87062 1.98245 1.91254 1.75067 1.43012 1.20871 1.05638 0.91847 0.99593 1.17521 0.91091 0.94076 0.89367 1.19516 1.37862 0.92803 1.01526 0.89250 1.26664 0.91729 1.04585 0.94448 1.69864 1.26634 1.39245 1.09097 0.85195 0.78903 0.76653 0.79272 1.17536 1.19862 1.19136 0.92689 0.92144 0.92973 0.90968 0.90939 0.92518 0.90235 0.90700 0.90654 0.91259 0.92612 0.74922 0.84752 0.86357 0.87325 0.90053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 8.87 71.98 0.64 -3.33 16 2 C -0.06 -1.50 1.89 -10.80 -0.02 -1.52 16 3 H 0.06 1.53 8.10 -2.39 -0.02 1.51 16 4 C -0.11 -1.77 5.20 30.59 0.16 -1.62 16 5 C -0.12 -1.76 5.92 30.59 0.18 -1.58 16 6 C -0.11 -1.74 5.92 30.59 0.18 -1.56 16 7 C -0.11 -2.37 5.11 30.61 0.16 -2.21 16 8 C -0.09 -2.24 2.06 -11.52 -0.02 -2.26 16 9 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 10 C 0.50 17.45 6.70 87.66 0.59 18.04 16 11 O -0.56 -22.97 10.60 -3.02 -0.03 -23.01 16 12 N -0.64 -24.41 5.01 -302.29 -1.52 -25.92 16 13 C 0.03 1.45 6.51 38.86 0.25 1.70 16 14 C -0.11 -4.99 8.75 22.35 0.20 -4.79 16 15 C -0.21 -9.90 9.82 22.44 0.22 -9.68 16 16 C -0.03 -1.27 6.31 22.29 0.14 -1.13 16 17 Cl -0.10 -4.31 28.94 -2.72 -0.08 -4.39 16 18 C -0.16 -8.15 8.41 22.72 0.19 -7.96 16 19 C 0.08 4.21 5.50 -21.18 -0.12 4.10 16 20 C -0.49 -23.28 8.23 23.38 0.19 -23.08 16 21 H 0.09 3.95 7.29 -2.91 -0.02 3.93 16 22 C 0.04 1.92 5.15 85.25 0.44 2.36 16 23 N -0.82 -40.55 11.29 21.83 0.25 -40.30 16 24 Si 0.98 34.96 29.59 68.60 2.03 36.99 16 25 H -0.25 -8.59 7.11 99.48 0.71 -7.88 16 26 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 27 H -0.27 -9.15 7.11 99.48 0.71 -8.45 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.71 5.51 -2.39 -0.01 1.69 16 31 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.50 7.69 -2.38 -0.02 1.48 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.41 14.29 7.09 -92.71 -0.66 13.63 16 40 H 0.14 6.23 5.49 -2.91 -0.02 6.21 16 41 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 42 H 0.11 5.85 6.61 -2.91 -0.02 5.83 16 43 H 0.29 12.99 8.30 -92.71 -0.77 12.23 16 Total: -1.00 -57.43 352.66 4.39 -53.04 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: 0.37 Total: 38.14 kcal Atomic # 6 Polarization: -37.91 SS G_CDS: 3.37 Total: -34.53 kcal Atomic # 7 Polarization: -64.96 SS G_CDS: -1.27 Total: -66.23 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.03 Total: -23.01 kcal Atomic # 14 Polarization: 34.96 SS G_CDS: 2.03 Total: 36.99 kcal Atomic # 17 Polarization: -4.31 SS G_CDS: -0.08 Total: -4.39 kcal Total: -57.43 4.39 -53.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425599922.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.402 kcal (2) G-P(sol) polarization free energy of solvation -57.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds