Wall clock time and date at job start Sat Apr 11 2020 00:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46723 * 2 1 4 4 C 1.50704 * 109.46981 * 240.00408 * 2 1 3 5 5 C 1.38229 * 120.00733 * 14.12462 * 4 2 1 6 6 C 1.38222 * 120.01239 * 180.02562 * 5 4 2 7 7 C 1.38265 * 120.02537 * 0.02562 * 6 5 4 8 8 C 1.38193 * 120.01430 * 359.97245 * 7 6 5 9 9 C 1.38331 * 120.00382 * 193.84645 * 4 2 1 10 10 Cl 1.73607 * 120.01236 * 359.97438 * 9 4 2 11 11 N 1.46500 * 109.47167 * 120.00102 * 2 1 3 12 12 C 1.34777 * 120.00048 * 245.78332 * 11 2 1 13 13 O 1.21276 * 119.99677 * 4.50846 * 12 11 2 14 14 C 1.50696 * 119.99611 * 184.23053 * 12 11 2 15 15 C 1.53003 * 109.46520 * 175.31807 * 14 12 11 16 16 C 1.50704 * 109.46691 * 180.02562 * 15 14 12 17 17 H 1.07997 * 120.00626 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99809 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00071 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99767 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47302 * 60.00396 * 20 18 16 22 22 H 1.48507 * 109.46921 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47443 * 299.99990 * 20 18 16 24 24 C 1.46501 * 119.99618 * 65.78588 * 11 2 1 25 25 C 1.53001 * 117.50226 * 2.75570 * 24 11 2 26 26 C 1.52993 * 117.49991 * 294.12970 * 24 11 2 27 27 H 1.09004 * 109.46846 * 179.48221 * 1 2 3 28 28 H 1.08997 * 109.47118 * 299.48690 * 1 2 3 29 29 H 1.09001 * 109.47046 * 59.48736 * 1 2 3 30 30 H 1.07999 * 119.99753 * 359.97438 * 5 4 2 31 31 H 1.08000 * 119.99012 * 179.97438 * 6 5 4 32 32 H 1.08005 * 119.99058 * 179.97438 * 7 6 5 33 33 H 1.07994 * 120.00699 * 180.02562 * 8 7 6 34 34 H 1.08993 * 109.47557 * 295.32156 * 14 12 11 35 35 H 1.09005 * 109.47379 * 55.32559 * 14 12 11 36 36 H 1.08995 * 109.47855 * 299.99998 * 15 14 12 37 37 H 1.08997 * 109.46861 * 60.00928 * 15 14 12 38 38 H 0.97002 * 120.00193 * 180.02562 * 19 18 16 39 39 H 1.09003 * 115.54483 * 148.46282 * 24 11 2 40 40 H 1.08998 * 117.49687 * 359.97438 * 25 24 11 41 41 H 1.09001 * 117.50020 * 145.01997 * 25 24 11 42 42 H 1.08998 * 117.50353 * 214.98143 * 26 24 11 43 43 H 1.09002 * 117.50436 * 0.02562 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 6 1.1683 -0.9766 -2.2762 6 6 1.6288 -1.6286 -3.4046 7 6 2.9537 -2.0153 -3.4880 8 6 3.8184 -1.7495 -2.4434 9 6 3.3595 -1.0909 -1.3163 10 17 4.4470 -0.7497 -0.0068 11 7 2.0184 -0.6906 1.1962 12 6 2.6944 -0.0067 2.1404 13 8 2.8277 1.1946 2.0403 14 6 3.2791 -0.7337 3.3238 15 6 4.0878 0.2466 4.1759 16 6 4.6731 -0.4806 5.3590 17 1 4.4873 -1.5364 5.4899 18 6 5.4458 0.2020 6.2744 19 7 5.6717 1.4878 6.1154 20 14 6.1707 -0.6992 7.7412 21 1 7.0595 -1.7886 7.2631 22 1 6.9547 0.2525 8.5689 23 1 5.0739 -1.2778 8.5582 24 6 1.7719 -2.1248 1.3658 25 6 1.0557 -2.8578 0.2297 26 6 0.3207 -2.5762 1.5417 27 1 -0.3633 -1.0277 -0.0093 28 1 -0.3633 0.5058 0.8945 29 1 -0.3633 0.5218 -0.8854 30 1 0.1331 -0.6760 -2.2111 31 1 0.9533 -1.8369 -4.2212 32 1 3.3128 -2.5250 -4.3699 33 1 4.8533 -2.0512 -2.5088 34 1 2.4741 -1.1581 3.9236 35 1 3.9313 -1.5336 2.9729 36 1 4.8929 0.6710 3.5761 37 1 3.4357 1.0464 4.5269 38 1 6.2156 1.9680 6.7592 39 1 2.5392 -2.6720 1.9135 40 1 0.7676 -2.2729 -0.6438 41 1 1.3518 -3.8876 0.0297 42 1 0.1331 -3.4207 2.2048 43 1 -0.4508 -1.8063 1.5308 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291800600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:22 Heat of formation + Delta-G solvation = 4.663909 kcal Electronic energy + Delta-G solvation = -25614.618222 eV Core-core repulsion = 22072.320763 eV Total energy + Delta-G solvation = -3542.297459 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.86839 -40.08501 -38.43250 -37.32502 -35.71193 -35.07600 -33.53362 -32.58996 -31.53829 -30.13431 -27.80065 -25.37767 -23.82721 -23.56355 -23.26993 -22.96590 -21.64099 -20.07829 -18.99454 -18.27996 -17.81141 -16.99076 -16.83426 -16.47415 -16.05090 -15.86632 -15.61723 -15.13776 -14.86967 -14.65153 -14.61715 -14.28991 -14.18103 -14.01712 -13.51151 -13.17967 -12.85971 -12.80618 -12.70957 -12.53307 -12.41619 -12.27961 -12.16059 -11.97772 -11.96494 -11.90160 -11.71466 -11.48827 -11.38311 -11.33786 -10.60880 -10.57976 -9.79373 -9.56982 -9.34841 -8.19683 -6.34335 0.19974 0.28633 1.29650 1.39120 1.44304 1.52008 1.72855 1.96776 2.41062 2.71878 2.98500 3.12650 3.45588 3.72609 3.79909 3.89653 4.02693 4.10659 4.18167 4.22899 4.29912 4.42553 4.44771 4.47660 4.51180 4.62252 4.69856 4.82777 4.83539 4.88270 4.99693 5.03435 5.11842 5.24395 5.27774 5.35852 5.37797 5.44943 5.50580 5.59112 5.67763 5.81996 5.90350 6.15467 6.44105 6.82923 7.29621 7.35926 8.92866 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.020166 B = 0.003743 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.159975 B = 7479.090275 C = 7868.869035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.169 3.831 3 H 0.076 0.924 4 C -0.088 4.088 5 C -0.107 4.107 6 C -0.106 4.106 7 C -0.104 4.104 8 C -0.121 4.121 9 C -0.046 4.046 10 Cl -0.089 7.089 11 N -0.571 5.571 12 C 0.527 3.473 13 O -0.582 6.582 14 C -0.112 4.112 15 C 0.050 3.950 16 C -0.545 4.545 17 H 0.073 0.927 18 C -0.005 4.005 19 N -0.937 5.937 20 Si 0.974 3.026 21 H -0.263 1.263 22 H -0.285 1.285 23 H -0.261 1.261 24 C 0.047 3.953 25 C -0.175 4.175 26 C -0.186 4.186 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.161 0.839 31 H 0.164 0.836 32 H 0.159 0.841 33 H 0.134 0.866 34 H 0.096 0.904 35 H 0.088 0.912 36 H -0.024 1.024 37 H -0.018 1.018 38 H 0.263 0.737 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.454 -13.387 -22.821 29.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.066 3.934 3 H 0.094 0.906 4 C -0.090 4.090 5 C -0.125 4.125 6 C -0.123 4.123 7 C -0.122 4.122 8 C -0.139 4.139 9 C -0.072 4.072 10 Cl -0.060 7.060 11 N -0.301 5.301 12 C 0.318 3.682 13 O -0.462 6.462 14 C -0.152 4.152 15 C 0.013 3.987 16 C -0.583 4.583 17 H 0.091 0.909 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.797 3.203 21 H -0.188 1.188 22 H -0.211 1.211 23 H -0.185 1.185 24 C -0.057 4.057 25 C -0.212 4.212 26 C -0.224 4.224 27 H 0.111 0.889 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.178 0.822 31 H 0.182 0.818 32 H 0.176 0.824 33 H 0.151 0.849 34 H 0.114 0.886 35 H 0.106 0.894 36 H -0.005 1.005 37 H 0.001 0.999 38 H 0.072 0.928 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.194 -12.561 -22.671 29.083 hybrid contribution 1.179 0.436 1.300 1.808 sum -12.015 -12.125 -21.370 27.351 Atomic orbital electron populations 1.22549 0.91954 1.04597 1.03336 1.19859 0.95988 0.95775 0.81805 0.90578 1.19943 0.92171 1.00011 0.96873 1.21385 1.00492 0.98486 0.92137 1.21625 0.96081 0.96539 0.98081 1.21484 0.93494 0.99031 0.98167 1.21262 1.01517 0.98782 0.92363 1.21097 0.91367 1.03596 0.91181 1.98444 1.64346 1.93880 1.49297 1.47358 1.55210 1.08466 1.19106 1.20973 0.76358 0.86979 0.83875 1.90621 1.60498 1.16825 1.78219 1.21576 1.00316 0.99374 0.93950 1.18614 0.93151 0.93520 0.93453 1.21646 1.31610 0.96356 1.08655 0.90924 1.26138 0.96741 0.95627 1.01741 1.70176 1.39688 1.09966 1.37812 0.85376 0.78667 0.78132 0.78099 1.18759 1.21087 1.18535 1.21789 0.97072 0.80599 1.06249 1.23829 1.02028 1.01876 0.93503 1.23687 0.94363 1.03957 1.00442 0.88858 0.93073 0.88738 0.82202 0.81821 0.82372 0.84852 0.88556 0.89368 1.00517 0.99933 0.92809 0.86110 0.85973 0.87034 0.86817 0.87825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 7.08 71.98 0.51 -2.67 16 2 C 0.17 4.56 2.52 44.25 0.11 4.67 16 3 H 0.08 2.65 6.95 -2.38 -0.02 2.64 16 4 C -0.09 -1.94 3.26 -19.84 -0.06 -2.00 16 5 C -0.11 -1.48 7.31 22.26 0.16 -1.32 16 6 C -0.11 -1.09 10.05 22.27 0.22 -0.87 16 7 C -0.10 -1.29 10.05 22.27 0.22 -1.07 16 8 C -0.12 -2.32 9.83 22.29 0.22 -2.10 16 9 C -0.05 -1.15 5.95 22.32 0.13 -1.02 16 10 Cl -0.09 -3.03 24.36 -2.72 -0.07 -3.10 16 11 N -0.57 -17.83 1.34 -778.17 -1.04 -18.87 16 12 C 0.53 22.50 5.44 87.66 0.48 22.98 16 13 O -0.58 -30.30 15.34 -3.02 -0.05 -30.35 16 14 C -0.11 -5.06 4.28 29.85 0.13 -4.93 16 15 C 0.05 2.97 4.28 29.85 0.13 3.10 16 16 C -0.54 -32.49 9.11 25.60 0.23 -32.26 16 17 H 0.07 3.97 7.74 -2.91 -0.02 3.95 16 18 C 0.00 -0.30 5.46 84.66 0.46 0.17 16 19 N -0.94 -61.21 13.29 21.45 0.28 -60.93 16 20 Si 0.97 45.65 29.54 68.60 2.03 47.68 16 21 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 22 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 24 C 0.05 1.15 5.29 44.99 0.24 1.39 16 25 C -0.18 -2.98 8.56 30.60 0.26 -2.72 16 26 C -0.19 -3.37 9.64 30.59 0.29 -3.08 16 27 H 0.09 1.40 3.90 -2.38 -0.01 1.39 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.27 6.92 -2.39 -0.02 1.26 16 30 H 0.16 1.40 5.97 -2.91 -0.02 1.38 16 31 H 0.16 0.58 8.06 -2.91 -0.02 0.55 16 32 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 33 H 0.13 2.40 8.06 -2.91 -0.02 2.37 16 34 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 35 H 0.09 3.69 7.47 -2.38 -0.02 3.68 16 36 H -0.02 -1.58 8.14 -2.39 -0.02 -1.60 16 37 H -0.02 -1.18 8.05 -2.39 -0.02 -1.20 16 38 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 39 H 0.12 3.13 6.85 -2.39 -0.02 3.11 16 40 H 0.12 1.90 2.68 -2.39 -0.01 1.89 16 41 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.10 1.87 5.99 -2.39 -0.01 1.85 16 Total: -1.00 -81.44 348.99 5.93 -75.52 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 1.03 Total: 11.76 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 3.74 Total: -21.72 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -0.75 Total: -79.80 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.05 Total: -30.35 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Atomic # 17 Polarization: -3.03 SS G_CDS: -0.07 Total: -3.10 kcal Total: -81.44 5.93 -75.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291800600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.182 kcal (2) G-P(sol) polarization free energy of solvation -81.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds