Wall clock time and date at job start Sat Apr 11 2020 00:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.62456 * 2 1 4 4 C 1.53230 * 109.78199 * 120.47320 * 2 1 3 5 5 C 1.52959 * 109.40415 * 65.18310 * 4 2 1 6 6 H 1.08997 * 109.40994 * 303.48740 * 5 4 2 7 7 C 1.50703 * 109.35679 * 183.66547 * 5 4 2 8 8 O 1.21285 * 119.99857 * 333.66301 * 7 5 4 9 9 N 1.34777 * 120.00116 * 153.65726 * 7 5 4 10 10 C 1.46499 * 119.99554 * 5.28048 * 9 7 5 11 11 C 1.50695 * 109.47224 * 93.22129 * 10 9 7 12 12 H 1.07995 * 120.00250 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00171 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00034 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99834 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47345 * 89.99721 * 15 13 11 17 17 H 1.48500 * 109.46934 * 209.99735 * 15 13 11 18 18 H 1.48496 * 109.47267 * 329.99910 * 15 13 11 19 19 C 1.46497 * 120.00338 * 185.27545 * 9 7 5 20 20 C 1.53002 * 109.46963 * 91.16986 * 19 9 7 21 21 F 1.39899 * 109.47053 * 63.65462 * 20 19 9 22 22 F 1.39896 * 109.47068 * 183.65986 * 20 19 9 23 23 F 1.39907 * 109.47065 * 303.65724 * 20 19 9 24 24 C 1.52957 * 109.81777 * 63.59560 * 5 4 2 25 25 C 1.53229 * 109.40393 * 296.40223 * 24 5 4 26 26 C 1.51267 * 108.53688 * 54.63171 * 25 24 5 27 27 O 1.20759 * 120.85453 * 128.67484 * 26 25 24 28 28 H 1.08996 * 109.47493 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47112 * 300.00548 * 1 2 3 30 30 H 1.09006 * 109.47087 * 59.99970 * 1 2 3 31 31 H 1.09008 * 109.48152 * 185.16285 * 4 2 1 32 32 H 1.08996 * 109.48611 * 305.19969 * 4 2 1 33 33 H 1.09006 * 109.46759 * 213.22050 * 10 9 7 34 34 H 1.08998 * 109.47664 * 333.21855 * 10 9 7 35 35 H 0.97005 * 120.00024 * 180.02562 * 14 13 11 36 36 H 1.08996 * 109.47406 * 211.16895 * 19 9 7 37 37 H 1.09004 * 109.46900 * 331.17341 * 19 9 7 38 38 H 1.08997 * 109.47988 * 176.42170 * 24 5 4 39 39 H 1.08999 * 109.48141 * 56.38582 * 24 5 4 40 40 H 1.08997 * 109.62569 * 294.91363 * 25 24 5 41 41 H 1.09002 * 109.62774 * 174.34057 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0486 -0.7312 1.2427 5 6 1.6508 -2.2063 1.1674 6 1 0.5688 -2.2847 1.0615 7 6 2.0823 -2.9052 2.4309 8 8 3.0208 -2.4783 3.0697 9 7 1.4254 -4.0044 2.8510 10 6 0.3678 -4.5873 2.0217 11 6 0.9529 -5.6646 1.1453 12 1 2.0072 -5.8921 1.2003 13 6 0.1422 -6.3600 0.2733 14 7 0.6530 -7.2998 -0.4919 15 14 -1.6813 -5.9661 0.1777 16 1 -1.9072 -4.9122 -0.8439 17 1 -2.4329 -7.1901 -0.1992 18 1 -2.1533 -5.4828 1.5000 19 6 1.7690 -4.6164 4.1369 20 6 0.8926 -4.0158 5.2379 21 9 -0.4475 -4.3341 4.9929 22 9 1.2771 -4.5387 6.4772 23 9 1.0470 -2.6253 5.2503 24 6 2.3285 -2.8654 -0.0351 25 6 1.8203 -2.2144 -1.3258 26 6 2.0381 -0.7207 -1.2291 27 8 2.6027 -0.1187 -2.1107 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.1347 -0.6493 1.2859 32 1 1.6143 -0.2827 2.1362 33 1 -0.4009 -5.0184 2.6632 34 1 -0.0738 -3.8108 1.3970 35 1 0.0827 -7.7887 -1.1056 36 1 1.5999 -5.6919 4.0842 37 1 2.8180 -4.4241 4.3621 38 1 2.0925 -3.9294 -0.0472 39 1 3.4079 -2.7331 0.0384 40 1 0.7573 -2.4224 -1.4468 41 1 2.3730 -2.6105 -2.1778 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330522904.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:31:07 Heat of formation + Delta-G solvation = -258.395781 kcal Electronic energy + Delta-G solvation = -29438.454083 eV Core-core repulsion = 24902.183594 eV Total energy + Delta-G solvation = -4536.270488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.06823 -48.59352 -48.55146 -41.75316 -40.48247 -37.55316 -37.01806 -34.59561 -33.53823 -31.74241 -30.55757 -29.12160 -27.09296 -24.87096 -24.53667 -23.74522 -23.09781 -20.46583 -19.60206 -19.51621 -19.39743 -19.00273 -18.35210 -18.03342 -17.35152 -16.69341 -16.37250 -16.22746 -15.76525 -15.54997 -15.46123 -15.42120 -15.28001 -15.00462 -14.74264 -14.72381 -14.62654 -14.51358 -14.23539 -13.86753 -13.76745 -13.49074 -13.41763 -13.22744 -13.02783 -12.86747 -12.67032 -12.50402 -12.40453 -12.07700 -12.02476 -11.86900 -11.63097 -11.38182 -10.78584 -10.66317 -10.31122 -9.74200 -8.23233 -6.29441 0.90106 1.41012 1.44067 1.49843 1.55553 1.76661 2.02524 2.39749 2.86406 3.04663 3.07390 3.11103 3.28964 3.49368 3.63244 3.72146 3.97811 4.04842 4.15688 4.25681 4.28669 4.38044 4.39104 4.48133 4.63540 4.65878 4.80992 4.89609 4.93163 4.98344 5.05362 5.10826 5.21480 5.33090 5.39639 5.45436 5.48908 6.14886 6.43951 6.44575 6.75764 7.09732 7.35152 8.91441 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.009744 B = 0.006683 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.830459 B = 4188.867654 C = 6029.926494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 H 0.105 0.895 4 C -0.086 4.086 5 C -0.104 4.104 6 H 0.117 0.883 7 C 0.526 3.474 8 O -0.570 6.570 9 N -0.595 5.595 10 C 0.208 3.792 11 C -0.530 4.530 12 H 0.043 0.957 13 C 0.032 3.968 14 N -0.935 5.935 15 Si 0.919 3.081 16 H -0.253 1.253 17 H -0.294 1.294 18 H -0.241 1.241 19 C 0.075 3.925 20 C 0.440 3.560 21 F -0.184 7.184 22 F -0.181 7.181 23 F -0.187 7.187 24 C -0.105 4.105 25 C -0.161 4.161 26 C 0.373 3.627 27 O -0.497 6.497 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.267 0.733 36 H 0.135 0.865 37 H 0.124 0.876 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.118 0.882 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.185 10.169 5.687 12.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.148 4.148 3 H 0.123 0.877 4 C -0.124 4.124 5 C -0.124 4.124 6 H 0.135 0.865 7 C 0.316 3.684 8 O -0.449 6.449 9 N -0.325 5.325 10 C 0.087 3.913 11 C -0.569 4.569 12 H 0.061 0.939 13 C -0.168 4.168 14 N -0.574 5.574 15 Si 0.742 3.258 16 H -0.177 1.177 17 H -0.221 1.221 18 H -0.164 1.164 19 C -0.052 4.052 20 C 0.384 3.616 21 F -0.166 7.166 22 F -0.162 7.162 23 F -0.168 7.168 24 C -0.143 4.143 25 C -0.199 4.199 26 C 0.251 3.749 27 O -0.372 6.372 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.153 0.847 37 H 0.142 0.858 38 H 0.112 0.888 39 H 0.075 0.925 40 H 0.136 0.864 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.467 10.593 5.440 12.403 hybrid contribution -0.592 -0.622 -0.054 0.860 sum -4.058 9.972 5.386 12.038 Atomic orbital electron populations 1.21865 0.90776 1.03648 1.04016 1.21906 0.99448 1.00625 0.92809 0.87674 1.21403 1.01663 0.91827 0.97469 1.21417 1.03629 0.95635 0.91754 0.86522 1.20996 0.81322 0.79514 0.86526 1.90626 1.29005 1.66564 1.58743 1.47847 1.38551 1.27657 1.18433 1.19947 0.86325 0.94254 0.90783 1.21312 0.95948 1.18451 1.21153 0.93895 1.25559 1.02619 0.94144 0.94524 1.70023 1.37907 1.24390 1.25088 0.86142 0.80304 0.78580 0.80789 1.17728 1.22067 1.16387 1.22544 1.00143 1.00871 0.81602 1.21339 0.80126 0.76528 0.83568 1.93173 1.36744 1.92516 1.94159 1.93166 1.90947 1.86467 1.45633 1.93175 1.95484 1.31512 1.96660 1.21485 0.99432 1.02247 0.91175 1.22250 1.05242 0.93068 0.99328 1.25307 0.72346 0.91596 0.85632 1.90367 1.34201 1.71279 1.41398 0.91308 0.89444 0.91392 0.91695 0.89321 0.93503 0.92224 0.92407 0.84744 0.85787 0.88843 0.92501 0.86443 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 8.90 71.98 0.64 -1.83 16 2 C -0.13 -2.76 3.16 -11.28 -0.04 -2.80 16 3 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 4 C -0.09 -2.10 4.17 30.66 0.13 -1.97 16 5 C -0.10 -2.95 1.52 -11.57 -0.02 -2.97 16 6 H 0.12 2.96 4.43 -2.39 -0.01 2.95 16 7 C 0.53 17.96 6.24 87.66 0.55 18.51 16 8 O -0.57 -21.72 15.54 -3.05 -0.05 -21.77 16 9 N -0.59 -20.33 2.37 -826.16 -1.96 -22.29 16 10 C 0.21 7.57 3.86 85.63 0.33 7.90 16 11 C -0.53 -24.13 7.87 25.60 0.20 -23.93 16 12 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 13 C 0.03 1.52 5.47 84.66 0.46 1.98 16 14 N -0.94 -50.53 13.96 21.45 0.30 -50.23 16 15 Si 0.92 35.48 27.47 68.60 1.88 37.36 16 16 H -0.25 -9.04 7.11 99.48 0.71 -8.33 16 17 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.24 -8.43 6.54 99.48 0.65 -7.78 16 19 C 0.07 2.26 5.50 86.38 0.48 2.74 16 20 C 0.44 12.78 3.30 71.98 0.24 13.02 16 21 F -0.18 -5.53 16.20 44.97 0.73 -4.80 16 22 F -0.18 -4.92 17.32 44.97 0.78 -4.15 16 23 F -0.19 -5.85 16.52 44.97 0.74 -5.11 16 24 C -0.11 -3.26 5.16 30.66 0.16 -3.10 16 25 C -0.16 -4.37 5.90 30.10 0.18 -4.19 16 26 C 0.37 10.07 6.06 29.46 0.18 10.25 16 27 O -0.50 -16.51 17.89 -1.45 -0.03 -16.54 16 28 H 0.07 1.17 6.00 -2.39 -0.01 1.16 16 29 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.06 1.77 7.98 -2.38 -0.02 1.75 16 32 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.05 1.70 6.20 -2.38 -0.01 1.68 16 34 H 0.06 1.97 5.11 -2.39 -0.01 1.95 16 35 H 0.27 13.71 8.31 -92.70 -0.77 12.94 16 36 H 0.13 3.84 8.08 -2.39 -0.02 3.82 16 37 H 0.12 3.68 7.32 -2.39 -0.02 3.66 16 38 H 0.09 3.48 5.73 -2.39 -0.01 3.47 16 39 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.12 2.81 7.81 -2.39 -0.02 2.79 16 41 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -59.27 339.00 6.90 -52.37 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 1.01 Total: 21.53 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 3.48 Total: 13.61 kcal Atomic # 7 Polarization: -70.86 SS G_CDS: -1.66 Total: -72.52 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.07 Total: -38.30 kcal Atomic # 9 Polarization: -16.30 SS G_CDS: 2.25 Total: -14.05 kcal Atomic # 14 Polarization: 35.48 SS G_CDS: 1.88 Total: 37.36 kcal Total: -59.27 6.90 -52.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330522904.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.025 kcal (2) G-P(sol) polarization free energy of solvation -59.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -258.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds