Wall clock time and date at job start Sat Apr 11 2020 00:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30168 * 126.80401 * 2 1 4 4 O 1.20924 * 111.60238 * 180.02562 * 3 2 1 5 5 C 1.34042 * 111.56790 * 359.76007 * 4 3 2 6 6 C 1.50695 * 126.77669 * 180.28822 * 5 4 3 7 7 C 1.35447 * 106.44365 * 0.38168 * 5 4 3 8 8 C 1.50700 * 128.00340 * 179.91617 * 7 5 4 9 9 C 1.50702 * 109.46869 * 269.67430 * 8 7 5 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 8 7 12 12 C 1.46506 * 120.00264 * 0.28128 * 11 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 11 9 8 14 14 H 1.09005 * 109.47049 * 0.02562 * 13 11 9 15 15 C 1.53000 * 109.47359 * 240.00361 * 13 11 9 16 16 N 1.46498 * 109.46946 * 55.00072 * 15 13 11 17 17 C 1.36941 * 119.99685 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00213 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99909 * 179.97438 * 17 16 15 20 20 N 1.31612 * 120.00284 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99958 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.46961 * 89.99799 * 21 19 17 23 23 H 1.48505 * 109.46819 * 210.00013 * 21 19 17 24 24 H 1.48498 * 109.46990 * 329.99858 * 21 19 17 25 25 C 1.53000 * 109.47264 * 120.00374 * 13 11 9 26 26 C 1.53008 * 117.49676 * 248.75357 * 25 13 11 27 27 C 1.52998 * 117.50195 * 180.09217 * 25 13 11 28 28 H 1.09004 * 109.47090 * 269.98043 * 1 2 3 29 29 H 1.08999 * 109.46961 * 29.97541 * 1 2 3 30 30 H 1.08995 * 109.47869 * 149.97719 * 1 2 3 31 31 H 1.08996 * 109.47367 * 270.11051 * 6 5 4 32 32 H 1.09006 * 109.47007 * 30.11161 * 6 5 4 33 33 H 1.09004 * 109.47444 * 150.11055 * 6 5 4 34 34 H 1.09004 * 109.47210 * 149.67723 * 8 7 5 35 35 H 1.08994 * 109.47551 * 29.67375 * 8 7 5 36 36 H 1.08998 * 109.46921 * 89.99095 * 12 11 9 37 37 H 1.08994 * 109.46996 * 209.99677 * 12 11 9 38 38 H 1.09001 * 109.46578 * 329.99540 * 12 11 9 39 39 H 1.09002 * 109.46979 * 174.99802 * 15 13 11 40 40 H 1.09001 * 109.47089 * 294.99626 * 15 13 11 41 41 H 0.96994 * 120.00525 * 359.97438 * 16 15 13 42 42 H 0.97001 * 120.00468 * 179.97438 * 20 19 17 43 43 H 1.09000 * 115.55199 * 34.41452 * 25 13 11 44 44 H 1.08994 * 117.49848 * 359.97438 * 26 25 13 45 45 H 1.08999 * 117.49691 * 145.01827 * 26 25 13 46 46 H 1.09000 * 117.49983 * 214.97775 * 27 25 13 47 47 H 1.09005 * 117.49613 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0422 0.0000 4 8 3.4537 0.7252 -0.0005 5 6 3.6024 -0.6070 0.0043 6 6 4.9020 -1.3698 0.0114 7 6 2.3539 -1.1321 -0.0005 8 6 1.9589 -2.5864 0.0001 9 6 1.8260 -3.0714 -1.4206 10 8 2.0322 -2.3112 -2.3427 11 7 1.4840 -4.3517 -1.6663 12 6 1.2354 -5.2703 -0.5524 13 6 1.3607 -4.8248 -3.0473 14 1 1.5817 -4.0066 -3.7328 15 6 -0.0653 -5.3231 -3.2903 16 7 -1.0177 -4.2637 -2.9486 17 6 -2.3626 -4.4817 -3.0860 18 1 -2.7212 -5.4344 -3.4467 19 6 -3.2651 -3.4780 -2.7617 20 7 -4.5577 -3.6873 -2.8942 21 14 -2.6449 -1.8303 -2.1372 22 1 -2.4229 -0.9170 -3.2868 23 1 -3.6521 -1.2373 -1.2210 24 1 -1.3667 -2.0270 -1.4071 25 6 2.3481 -5.9692 -3.2845 26 6 3.5267 -5.7021 -4.2230 27 6 2.3748 -6.6021 -4.6772 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3635 -0.8897 -0.5141 31 1 5.2200 -1.5553 -1.0145 32 1 5.6635 -0.7853 0.5278 33 1 4.7626 -2.3205 0.5261 34 1 1.0052 -2.7037 0.5148 35 1 2.7230 -3.1702 0.5133 36 1 0.1810 -5.2323 -0.2786 37 1 1.4964 -6.2849 -0.8531 38 1 1.8438 -4.9769 0.3031 39 1 -0.1823 -5.5920 -4.3402 40 1 -0.2557 -6.1975 -2.6680 41 1 -0.6957 -3.4082 -2.6243 42 1 -5.1884 -2.9861 -2.6672 43 1 2.5230 -6.6238 -2.4307 44 1 3.5984 -4.7114 -4.6716 45 1 4.4767 -6.1815 -3.9868 46 1 2.5674 -7.6731 -4.7397 47 1 1.6884 -6.2035 -5.4244 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755571432.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:34:37 Heat of formation + Delta-G solvation = 44.382699 kcal Electronic energy + Delta-G solvation = -28741.912020 eV Core-core repulsion = 24928.753578 eV Total energy + Delta-G solvation = -3813.158442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -45.97705 -41.23919 -38.88692 -36.71185 -36.31257 -35.80568 -34.66057 -33.52272 -31.38833 -29.95355 -29.63326 -28.07426 -27.64415 -25.87367 -23.81793 -23.17352 -22.80157 -21.53403 -21.06275 -20.27465 -19.54121 -18.85166 -18.25309 -17.93353 -17.34408 -16.76751 -16.64379 -15.98280 -15.63307 -15.48129 -15.11583 -14.97834 -14.89422 -14.51696 -14.41632 -14.06211 -14.00145 -13.86365 -13.74001 -13.59369 -13.53494 -13.18671 -13.02187 -13.01097 -12.97328 -12.79530 -12.35029 -12.18201 -12.08258 -11.89554 -11.81270 -11.32790 -11.07894 -11.05647 -10.91502 -10.71575 -10.09869 -9.58788 -9.33181 -8.07409 -5.39339 0.46808 1.07230 1.22229 1.32969 1.35727 1.62240 2.04337 2.21972 2.39629 2.90321 3.12036 3.24223 3.44776 3.46257 3.68179 3.76156 3.93867 3.97490 4.00020 4.09449 4.26627 4.27156 4.32689 4.41174 4.42632 4.45142 4.51630 4.54744 4.66493 4.70077 4.71408 4.78798 4.81726 4.88631 4.89402 5.02733 5.03014 5.08102 5.09144 5.23933 5.27852 5.30962 5.61977 5.72735 6.16022 6.43496 7.02580 7.19077 7.27064 7.80036 7.97763 9.13227 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.009199 B = 0.006235 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.073888 B = 4489.617102 C = 6920.882656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.016 3.984 3 N -0.399 5.399 4 O 0.087 5.913 5 C -0.012 4.012 6 C -0.071 4.071 7 C -0.199 4.199 8 C -0.055 4.055 9 C 0.509 3.491 10 O -0.584 6.584 11 N -0.596 5.596 12 C 0.067 3.933 13 C 0.168 3.832 14 H 0.068 0.932 15 C 0.150 3.850 16 N -0.754 5.754 17 C -0.224 4.224 18 H 0.064 0.936 19 C -0.055 4.055 20 N -0.979 5.979 21 Si 0.935 3.065 22 H -0.302 1.302 23 H -0.286 1.286 24 H -0.241 1.241 25 C -0.160 4.160 26 C -0.169 4.169 27 C -0.170 4.170 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.153 0.847 36 H 0.047 0.953 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.030 0.970 40 H 0.043 0.957 41 H 0.361 0.639 42 H 0.257 0.743 43 H 0.133 0.867 44 H 0.075 0.925 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.726 -4.634 10.067 26.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.142 4.142 3 N -0.108 5.108 4 O 0.025 5.975 5 C -0.076 4.076 6 C -0.128 4.128 7 C -0.203 4.203 8 C -0.095 4.095 9 C 0.298 3.702 10 O -0.464 6.464 11 N -0.328 5.328 12 C -0.075 4.075 13 C 0.064 3.936 14 H 0.086 0.914 15 C 0.023 3.977 16 N -0.399 5.399 17 C -0.355 4.355 18 H 0.082 0.918 19 C -0.247 4.247 20 N -0.630 5.630 21 Si 0.765 3.235 22 H -0.229 1.229 23 H -0.213 1.213 24 H -0.166 1.166 25 C -0.179 4.179 26 C -0.205 4.205 27 C -0.207 4.207 28 H 0.124 0.876 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.171 0.829 36 H 0.065 0.935 37 H 0.112 0.888 38 H 0.125 0.875 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.193 0.807 42 H 0.066 0.934 43 H 0.151 0.849 44 H 0.094 0.906 45 H 0.135 0.865 46 H 0.137 0.863 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 23.441 -3.066 9.553 25.497 hybrid contribution -0.980 0.721 -0.281 1.249 sum 22.461 -2.345 9.272 24.412 Atomic orbital electron populations 1.20499 0.86450 1.03592 1.04618 1.23648 0.99137 0.89432 1.01974 1.73774 0.89938 1.24688 1.22363 1.84717 1.21024 1.23741 1.68046 1.24963 0.99444 0.83084 1.00103 1.20600 0.88099 0.99181 1.04929 1.20515 0.92040 0.96567 1.11221 1.20045 1.06348 0.89572 0.93518 1.21029 0.75811 0.81394 0.91965 1.90690 1.52300 1.55569 1.47815 1.47783 1.67402 1.10301 1.07284 1.22104 1.01911 0.94653 0.88783 1.20676 0.93556 0.95884 0.83529 0.91424 1.21100 0.87431 0.91116 0.98012 1.42674 1.02299 1.14387 1.80586 1.19043 0.82479 0.99091 1.34934 0.91799 1.25305 0.95200 1.01196 1.03020 1.69840 1.01484 1.34698 1.56968 0.85812 0.78339 0.81135 0.78240 1.22942 1.21260 1.16636 1.22442 0.99517 0.99947 0.95984 1.23031 0.93974 1.00660 1.02882 1.23017 1.01398 1.00173 0.96141 0.87631 0.91152 0.91019 0.89216 0.87655 0.86482 0.86786 0.82919 0.93455 0.88804 0.87463 0.95210 0.93894 0.80658 0.93397 0.84884 0.90597 0.86479 0.86323 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.96 10.39 71.24 0.74 -2.22 16 2 C 0.02 0.53 7.33 43.58 0.32 0.85 16 3 N -0.40 -13.44 12.07 -49.57 -0.60 -14.04 16 4 O 0.09 2.54 11.20 71.61 0.80 3.34 16 5 C -0.01 -0.28 7.49 25.04 0.19 -0.10 16 6 C -0.07 -0.85 10.30 71.23 0.73 -0.11 16 7 C -0.20 -5.33 4.81 -19.74 -0.10 -5.43 16 8 C -0.06 -1.18 4.58 29.10 0.13 -1.05 16 9 C 0.51 15.05 7.37 87.66 0.65 15.70 16 10 O -0.58 -22.98 15.36 -3.04 -0.05 -23.03 16 11 N -0.60 -15.68 2.24 -822.58 -1.85 -17.52 16 12 C 0.07 1.20 9.38 127.77 1.20 2.39 16 13 C 0.17 5.00 2.42 44.99 0.11 5.10 16 14 H 0.07 2.49 6.66 -2.38 -0.02 2.47 16 15 C 0.15 5.55 5.32 86.38 0.46 6.01 16 16 N -0.75 -35.83 5.24 -343.45 -1.80 -37.63 16 17 C -0.22 -12.86 10.47 84.03 0.88 -11.98 16 18 H 0.06 3.94 8.06 -2.91 -0.02 3.92 16 19 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 20 N -0.98 -63.25 13.97 21.65 0.30 -62.95 16 21 Si 0.94 47.47 27.22 68.60 1.87 49.34 16 22 H -0.30 -16.09 7.11 99.48 0.71 -15.38 16 23 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 24 H -0.24 -10.91 4.42 99.48 0.44 -10.48 16 25 C -0.16 -3.33 5.15 -10.79 -0.06 -3.38 16 26 C -0.17 -3.21 10.18 30.62 0.31 -2.90 16 27 C -0.17 -3.34 9.80 30.62 0.30 -3.04 16 28 H 0.11 2.68 8.14 -2.38 -0.02 2.66 16 29 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.07 2.51 5.34 -2.39 -0.01 2.50 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.12 0.73 7.44 -2.38 -0.02 0.72 16 34 H 0.11 2.33 8.11 -2.38 -0.02 2.31 16 35 H 0.15 1.67 6.69 -2.39 -0.02 1.66 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.30 6.43 -2.39 -0.02 1.28 16 38 H 0.11 1.03 6.43 -2.39 -0.02 1.02 16 39 H 0.03 1.15 7.48 -2.39 -0.02 1.14 16 40 H 0.04 1.50 7.84 -2.39 -0.02 1.48 16 41 H 0.36 17.39 4.93 -92.71 -0.46 16.93 16 42 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 43 H 0.13 2.10 6.59 -2.39 -0.02 2.09 16 44 H 0.08 1.75 8.05 -2.39 -0.02 1.73 16 45 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.08 1.90 7.67 -2.38 -0.02 1.88 16 Total: -1.00 -82.72 379.42 5.28 -77.44 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.26 Total: 28.05 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 6.34 Total: -3.01 kcal Atomic # 7 Polarization: -128.19 SS G_CDS: -3.94 Total: -132.13 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: 0.76 Total: -19.69 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.87 Total: 49.34 kcal Total: -82.72 5.28 -77.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755571432.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.826 kcal (2) G-P(sol) polarization free energy of solvation -82.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds