Wall clock time and date at job start Sat Apr 11 2020 00:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81396 * 109.47218 * 2 1 4 4 C 1.76206 * 103.00070 * 180.02562 * 3 2 1 5 5 C 1.38997 * 120.07660 * 0.02562 * 4 3 2 6 6 C 1.38056 * 119.91689 * 179.97438 * 5 4 3 7 7 C 1.38324 * 120.07923 * 0.25653 * 6 5 4 8 8 C 1.38283 * 120.16493 * 359.48315 * 7 6 5 9 9 C 1.50689 * 119.96467 * 180.26030 * 8 7 6 10 10 N 1.46902 * 109.47023 * 257.97742 * 9 8 7 11 11 C 1.46902 * 110.99842 * 154.16315 * 10 9 8 12 12 C 1.50699 * 109.47174 * 207.30951 * 11 10 9 13 13 H 1.08005 * 120.00098 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00363 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99770 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00226 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47300 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47048 * 119.99921 * 16 14 12 19 19 H 1.48495 * 109.47155 * 240.00292 * 16 14 12 20 20 C 1.46905 * 111.00097 * 278.11618 * 10 9 8 21 21 C 1.53001 * 109.46920 * 311.28574 * 20 10 9 22 22 C 1.52998 * 109.46830 * 89.79886 * 21 20 10 23 23 C 1.53004 * 109.46661 * 209.79368 * 21 20 10 24 24 C 1.52999 * 109.47221 * 329.79738 * 21 20 10 25 25 C 1.38106 * 120.07296 * 0.51850 * 8 7 6 26 26 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46822 * 299.99913 * 1 2 3 28 28 H 1.08998 * 109.47303 * 59.99286 * 1 2 3 29 29 H 1.08999 * 109.46678 * 240.00617 * 2 1 3 30 30 H 1.08998 * 109.47303 * 120.00714 * 2 1 3 31 31 H 1.07997 * 120.03969 * 359.97438 * 5 4 3 32 32 H 1.08003 * 119.96024 * 179.97438 * 6 5 4 33 33 H 1.08001 * 119.91864 * 179.74925 * 7 6 5 34 34 H 1.09000 * 109.47010 * 17.97284 * 9 8 7 35 35 H 1.09002 * 109.47599 * 137.97971 * 9 8 7 36 36 H 1.08994 * 109.47340 * 327.31053 * 11 10 9 37 37 H 1.09006 * 109.47207 * 87.31573 * 11 10 9 38 38 H 0.97001 * 120.00224 * 179.97438 * 15 14 12 39 39 H 1.08999 * 109.46476 * 71.28372 * 20 10 9 40 40 H 1.08999 * 109.47019 * 191.28493 * 20 10 9 41 41 H 1.08996 * 109.47587 * 53.04231 * 22 21 20 42 42 H 1.09004 * 109.46854 * 173.04289 * 22 21 20 43 43 H 1.09008 * 109.47067 * 293.03278 * 22 21 20 44 44 H 1.08996 * 109.46917 * 60.00561 * 23 21 20 45 45 H 1.08999 * 109.46678 * 179.97438 * 23 21 20 46 46 H 1.08994 * 109.47350 * 300.00113 * 23 21 20 47 47 H 1.08997 * 109.47069 * 37.25967 * 24 21 20 48 48 H 1.08998 * 109.46776 * 157.26594 * 24 21 20 49 49 H 1.08999 * 109.46669 * 277.26309 * 24 21 20 50 50 H 1.08008 * 120.03897 * 179.76729 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.8855 1.5116 -0.0008 5 6 4.4421 0.2379 -0.0017 6 6 5.8143 0.0862 -0.0029 7 6 6.6350 1.1996 0.0023 8 6 6.0849 2.4683 -0.0021 9 6 6.9831 3.6782 -0.0024 10 7 7.0396 4.2464 1.3511 11 6 8.2926 4.9842 1.5604 12 6 8.6443 4.9713 3.0257 13 1 8.0012 4.4660 3.7311 14 6 9.7866 5.6056 3.4662 15 7 10.5689 6.2222 2.6076 16 14 10.2230 5.5890 5.2824 17 1 9.1884 4.8332 6.0332 18 1 11.5441 4.9366 5.4681 19 1 10.2836 6.9833 5.7897 20 6 5.8747 5.1026 1.6117 21 6 5.6852 6.0747 0.4454 22 6 4.7739 5.4382 -0.6060 23 6 5.0473 7.3676 0.9578 24 6 7.0446 6.3902 -0.1816 25 6 4.7130 2.6278 -0.0010 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8019 -0.6318 -0.0016 32 1 6.2475 -0.9032 -0.0032 33 1 7.7081 1.0779 0.0055 34 1 7.9855 3.3865 -0.3160 35 1 6.5888 4.4235 -0.6931 36 1 9.0923 4.5112 0.9906 37 1 8.1680 6.0142 1.2258 38 1 11.3724 6.6688 2.9174 39 1 4.9843 4.4826 1.7163 40 1 6.0357 5.6653 2.5312 41 1 3.8522 5.1012 -0.1319 42 1 4.5388 6.1733 -1.3758 43 1 5.2817 4.5870 -1.0595 44 1 5.6965 7.8210 1.7068 45 1 4.9127 8.0603 0.1270 46 1 4.0788 7.1428 1.4044 47 1 7.6638 5.4932 -0.1771 48 1 6.9017 6.7280 -1.2080 49 1 7.5369 7.1743 0.3938 50 1 4.2839 3.6190 -0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180030142.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:36:28 Heat of formation + Delta-G solvation = 78.404399 kcal Electronic energy + Delta-G solvation = -26018.779448 eV Core-core repulsion = 22753.389511 eV Total energy + Delta-G solvation = -3265.389936 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.182 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.26530 -38.27678 -34.04629 -33.27417 -32.61894 -31.30443 -30.85577 -27.80065 -27.51907 -26.73762 -25.92850 -24.16077 -23.53910 -22.26685 -21.33083 -20.22029 -18.54506 -17.05645 -16.38577 -16.32770 -15.60748 -15.16645 -15.10882 -15.01393 -14.49612 -14.39844 -14.07222 -13.73339 -13.56167 -13.16968 -12.92711 -12.66485 -12.59047 -12.28938 -12.19227 -11.94718 -11.76827 -11.47470 -11.27175 -11.19882 -11.08183 -11.01244 -10.83942 -10.74660 -10.63245 -10.42911 -10.36786 -10.14516 -9.91507 -9.74976 -9.65381 -9.47286 -9.07487 -8.55715 -8.31629 -7.33540 -7.01302 -5.95691 -3.95263 1.44176 1.47724 1.58998 2.40061 3.33696 3.41485 3.47246 3.90066 4.48440 4.59898 4.63558 4.94226 5.02960 5.06118 5.10912 5.20675 5.22799 5.33448 5.37555 5.39915 5.41865 5.45193 5.57357 5.67374 5.73020 5.75112 5.83968 5.85580 5.96599 6.02192 6.05107 6.12808 6.19385 6.27764 6.30037 6.40487 6.41056 6.49743 6.60966 6.62277 6.72172 6.83628 6.90315 6.95915 7.14846 7.26139 7.47849 7.90305 8.17196 8.26719 8.61902 9.12320 9.67453 11.13469 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.014791 B = 0.003547 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.563996 B = 7891.038016 C = 8604.084320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 S -0.131 6.131 4 C -0.086 4.086 5 C -0.145 4.145 6 C -0.105 4.105 7 C -0.109 4.109 8 C -0.036 4.036 9 C 0.051 3.949 10 N -0.523 5.523 11 C 0.160 3.840 12 C -0.496 4.496 13 H 0.061 0.939 14 C 0.053 3.947 15 N -0.902 5.902 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.286 1.286 20 C 0.068 3.932 21 C -0.102 4.102 22 C -0.163 4.163 23 C -0.135 4.135 24 C -0.168 4.168 25 C -0.117 4.117 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.023 0.977 37 H 0.039 0.961 38 H 0.259 0.741 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.046 0.954 46 H 0.049 0.951 47 H 0.091 0.909 48 H 0.036 0.964 49 H 0.067 0.933 50 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.284 -8.938 -8.865 20.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.258 4.258 3 S 0.110 5.890 4 C -0.198 4.198 5 C -0.169 4.169 6 C -0.125 4.125 7 C -0.130 4.130 8 C -0.038 4.038 9 C -0.076 4.076 10 N -0.245 5.245 11 C 0.036 3.964 12 C -0.535 4.535 13 H 0.079 0.921 14 C -0.147 4.147 15 N -0.542 5.542 16 Si 0.721 3.279 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.213 1.213 20 C -0.061 4.061 21 C -0.103 4.103 22 C -0.219 4.219 23 C -0.192 4.192 24 C -0.225 4.225 25 C -0.140 4.140 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.041 0.959 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.110 0.890 48 H 0.055 0.945 49 H 0.086 0.914 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.885 -8.270 -8.515 20.640 hybrid contribution 1.262 -0.582 0.561 1.499 sum -15.623 -8.852 -7.954 19.639 Atomic orbital electron populations 1.21513 0.92015 1.02719 1.03283 1.23544 1.00219 0.96633 1.05413 1.85424 0.99013 1.11288 1.93250 1.21598 0.95872 0.96534 1.05808 1.20995 0.95775 0.95148 1.04982 1.20956 0.92935 0.98610 0.99957 1.21153 1.00002 0.91950 0.99881 1.20004 0.93229 0.95317 0.95299 1.21956 0.98213 0.93875 0.93571 1.62223 1.04206 1.36160 1.21916 1.20630 0.84261 0.94116 0.97363 1.21289 1.07050 1.32213 0.92993 0.92113 1.24946 0.96445 0.95787 0.97548 1.69953 1.14379 1.36178 1.33722 0.86520 0.78250 0.77506 0.85620 1.19752 1.21211 1.21252 1.22312 0.93832 0.92857 0.97054 1.21197 0.95632 0.96538 0.96969 1.22785 0.99145 1.01198 0.98806 1.21850 1.00242 0.96544 1.00607 1.22941 0.96770 1.04040 0.98732 1.21584 0.92962 0.98740 1.00710 0.90961 0.91531 0.91617 0.89653 0.89557 0.86725 0.86249 0.85872 0.90836 0.90235 0.95945 0.94375 0.93183 0.92338 0.90210 0.92422 0.93154 0.90387 0.92232 0.93463 0.93173 0.89049 0.94482 0.91415 0.83357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.92 37.16 0.37 -0.57 16 2 C -0.11 -0.96 5.05 37.16 0.19 -0.77 16 3 S -0.13 -1.59 21.92 -107.50 -2.36 -3.95 16 4 C -0.09 -1.22 6.11 -39.04 -0.24 -1.46 16 5 C -0.15 -1.90 9.36 -39.37 -0.37 -2.27 16 6 C -0.10 -1.40 10.04 -39.62 -0.40 -1.80 16 7 C -0.11 -1.66 9.66 -39.53 -0.38 -2.04 16 8 C -0.04 -0.58 5.30 -104.66 -0.55 -1.14 16 9 C 0.05 0.89 3.71 -4.98 -0.02 0.88 16 10 N -0.52 -10.81 4.46 -237.52 -1.06 -11.87 16 11 C 0.16 3.94 3.40 -4.98 -0.02 3.92 16 12 C -0.50 -13.78 8.94 -34.44 -0.31 -14.08 16 13 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 14 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 15 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 16 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 20 C 0.07 1.28 4.85 -3.82 -0.02 1.26 16 21 C -0.10 -1.62 0.77 -154.51 -0.12 -1.74 16 22 C -0.16 -2.25 6.39 37.16 0.24 -2.01 16 23 C -0.13 -1.98 8.19 37.16 0.30 -1.68 16 24 C -0.17 -2.96 6.20 37.16 0.23 -2.73 16 25 C -0.12 -1.80 7.42 -39.37 -0.29 -2.09 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.69 7.75 -51.92 -0.40 0.28 16 30 H 0.09 0.73 7.75 -51.92 -0.40 0.33 16 31 H 0.11 1.23 5.88 -52.49 -0.31 0.92 16 32 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 33 H 0.12 1.79 8.02 -52.49 -0.42 1.37 16 34 H 0.07 1.32 7.22 -51.93 -0.38 0.95 16 35 H 0.08 1.30 2.35 -51.93 -0.12 1.18 16 36 H 0.02 0.60 7.37 -51.93 -0.38 0.22 16 37 H 0.04 0.96 3.84 -51.93 -0.20 0.76 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 39 H 0.06 1.04 6.10 -51.93 -0.32 0.73 16 40 H 0.08 1.66 7.36 -51.93 -0.38 1.27 16 41 H 0.06 0.77 6.41 -51.93 -0.33 0.43 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 1.10 3.59 -51.92 -0.19 0.92 16 44 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.09 1.74 2.69 -51.93 -0.14 1.60 16 48 H 0.04 0.57 7.94 -51.93 -0.41 0.16 16 49 H 0.07 1.33 6.75 -51.93 -0.35 0.98 16 50 H 0.15 2.21 2.66 -52.48 -0.14 2.07 16 LS Contribution 376.14 15.07 5.67 5.67 Total: -1.00 -29.43 376.14 -11.32 -40.75 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -7.80 Total: 5.13 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: -1.48 Total: -26.93 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: -0.32 Total: -37.43 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.36 Total: -3.95 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.43 -11.32 -40.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180030142.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.153 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds