Wall clock time and date at job start Sat Apr 11 2020 00:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81396 * 109.47218 * 2 1 4 4 C 1.76206 * 103.00070 * 180.02562 * 3 2 1 5 5 C 1.38997 * 120.07660 * 0.02562 * 4 3 2 6 6 C 1.38056 * 119.91689 * 179.97438 * 5 4 3 7 7 C 1.38324 * 120.07923 * 0.25653 * 6 5 4 8 8 C 1.38283 * 120.16493 * 359.48315 * 7 6 5 9 9 C 1.50689 * 119.96467 * 180.26030 * 8 7 6 10 10 N 1.46902 * 109.47023 * 257.97742 * 9 8 7 11 11 C 1.46902 * 110.99842 * 154.16315 * 10 9 8 12 12 C 1.50699 * 109.47174 * 207.30951 * 11 10 9 13 13 H 1.08005 * 120.00098 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00363 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99770 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00226 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47300 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47048 * 119.99921 * 16 14 12 19 19 H 1.48495 * 109.47155 * 240.00292 * 16 14 12 20 20 C 1.46905 * 111.00097 * 278.11618 * 10 9 8 21 21 C 1.53001 * 109.46920 * 311.28574 * 20 10 9 22 22 C 1.52998 * 109.46830 * 89.79886 * 21 20 10 23 23 C 1.53004 * 109.46661 * 209.79368 * 21 20 10 24 24 C 1.52999 * 109.47221 * 329.79738 * 21 20 10 25 25 C 1.38106 * 120.07296 * 0.51850 * 8 7 6 26 26 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46822 * 299.99913 * 1 2 3 28 28 H 1.08998 * 109.47303 * 59.99286 * 1 2 3 29 29 H 1.08999 * 109.46678 * 240.00617 * 2 1 3 30 30 H 1.08998 * 109.47303 * 120.00714 * 2 1 3 31 31 H 1.07997 * 120.03969 * 359.97438 * 5 4 3 32 32 H 1.08003 * 119.96024 * 179.97438 * 6 5 4 33 33 H 1.08001 * 119.91864 * 179.74925 * 7 6 5 34 34 H 1.09000 * 109.47010 * 17.97284 * 9 8 7 35 35 H 1.09002 * 109.47599 * 137.97971 * 9 8 7 36 36 H 1.08994 * 109.47340 * 327.31053 * 11 10 9 37 37 H 1.09006 * 109.47207 * 87.31573 * 11 10 9 38 38 H 0.97001 * 120.00224 * 179.97438 * 15 14 12 39 39 H 1.08999 * 109.46476 * 71.28372 * 20 10 9 40 40 H 1.08999 * 109.47019 * 191.28493 * 20 10 9 41 41 H 1.08996 * 109.47587 * 53.04231 * 22 21 20 42 42 H 1.09004 * 109.46854 * 173.04289 * 22 21 20 43 43 H 1.09008 * 109.47067 * 293.03278 * 22 21 20 44 44 H 1.08996 * 109.46917 * 60.00561 * 23 21 20 45 45 H 1.08999 * 109.46678 * 179.97438 * 23 21 20 46 46 H 1.08994 * 109.47350 * 300.00113 * 23 21 20 47 47 H 1.08997 * 109.47069 * 37.25967 * 24 21 20 48 48 H 1.08998 * 109.46776 * 157.26594 * 24 21 20 49 49 H 1.08999 * 109.46669 * 277.26309 * 24 21 20 50 50 H 1.08008 * 120.03897 * 179.76729 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.8855 1.5116 -0.0008 5 6 4.4421 0.2379 -0.0017 6 6 5.8143 0.0862 -0.0029 7 6 6.6350 1.1996 0.0023 8 6 6.0849 2.4683 -0.0021 9 6 6.9831 3.6782 -0.0024 10 7 7.0396 4.2464 1.3511 11 6 8.2926 4.9842 1.5604 12 6 8.6443 4.9713 3.0257 13 1 8.0012 4.4660 3.7311 14 6 9.7866 5.6056 3.4662 15 7 10.5689 6.2222 2.6076 16 14 10.2230 5.5890 5.2824 17 1 9.1884 4.8332 6.0332 18 1 11.5441 4.9366 5.4681 19 1 10.2836 6.9833 5.7897 20 6 5.8747 5.1026 1.6117 21 6 5.6852 6.0747 0.4454 22 6 4.7739 5.4382 -0.6060 23 6 5.0473 7.3676 0.9578 24 6 7.0446 6.3902 -0.1816 25 6 4.7130 2.6278 -0.0010 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8019 -0.6318 -0.0016 32 1 6.2475 -0.9032 -0.0032 33 1 7.7081 1.0779 0.0055 34 1 7.9855 3.3865 -0.3160 35 1 6.5888 4.4235 -0.6931 36 1 9.0923 4.5112 0.9906 37 1 8.1680 6.0142 1.2258 38 1 11.3724 6.6688 2.9174 39 1 4.9843 4.4826 1.7163 40 1 6.0357 5.6653 2.5312 41 1 3.8522 5.1012 -0.1319 42 1 4.5388 6.1733 -1.3758 43 1 5.2817 4.5870 -1.0595 44 1 5.6965 7.8210 1.7068 45 1 4.9127 8.0603 0.1270 46 1 4.0788 7.1428 1.4044 47 1 7.6638 5.4932 -0.1771 48 1 6.9017 6.7280 -1.2080 49 1 7.5369 7.1743 0.3938 50 1 4.2839 3.6190 -0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180030142.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:36:27 Heat of formation + Delta-G solvation = 63.895212 kcal Electronic energy + Delta-G solvation = -26019.408613 eV Core-core repulsion = 22753.389511 eV Total energy + Delta-G solvation = -3266.019102 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.182 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.66341 -39.47057 -35.64562 -34.54361 -33.83604 -32.69184 -31.96070 -29.42895 -28.93553 -28.23605 -27.26494 -25.49582 -24.67754 -23.30356 -22.78784 -21.68551 -19.88780 -18.61609 -17.91505 -17.37078 -16.91019 -16.80188 -16.38725 -15.90685 -15.74203 -15.66925 -15.45434 -15.19684 -14.80826 -14.46550 -14.20125 -14.00814 -13.80002 -13.38374 -13.18168 -13.01237 -12.99767 -12.88316 -12.73523 -12.63565 -12.45502 -12.35429 -12.32906 -12.18639 -12.07835 -11.94427 -11.78305 -11.51121 -11.44642 -11.17449 -11.06533 -10.89581 -10.57303 -10.46620 -9.69761 -8.68514 -8.30486 -8.10413 -6.19776 0.32218 0.47421 0.60418 1.38558 1.39958 1.52648 1.52802 2.42371 2.75350 3.17762 3.55249 3.86205 3.89976 3.93326 3.98412 4.00379 4.03348 4.06950 4.17749 4.31765 4.45687 4.51567 4.54313 4.56265 4.65220 4.68189 4.71396 4.78185 4.87097 4.89819 4.91054 4.92528 4.97901 5.07569 5.13123 5.16470 5.21808 5.23650 5.27575 5.30680 5.35979 5.46621 5.48263 5.51571 5.58005 5.75387 5.78968 6.03183 6.20237 6.51929 6.72362 6.95357 7.47371 8.95734 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.014791 B = 0.003547 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.563996 B = 7891.038016 C = 8604.084320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.103 4.103 3 S -0.151 6.151 4 C -0.094 4.094 5 C -0.143 4.143 6 C -0.102 4.102 7 C -0.129 4.129 8 C -0.054 4.054 9 C 0.057 3.943 10 N -0.535 5.535 11 C 0.177 3.823 12 C -0.513 4.513 13 H 0.048 0.952 14 C 0.004 3.996 15 N -0.932 5.932 16 Si 0.957 3.043 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.278 1.278 20 C 0.073 3.927 21 C -0.096 4.096 22 C -0.155 4.155 23 C -0.131 4.131 24 C -0.164 4.164 25 C -0.128 4.128 26 H 0.095 0.905 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.119 0.881 34 H 0.057 0.943 35 H 0.094 0.906 36 H -0.007 1.007 37 H 0.033 0.967 38 H 0.261 0.739 39 H 0.069 0.931 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.060 0.940 49 H 0.038 0.962 50 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.732 -10.399 -9.186 23.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.251 4.251 3 S 0.091 5.909 4 C -0.206 4.206 5 C -0.167 4.167 6 C -0.121 4.121 7 C -0.150 4.150 8 C -0.057 4.057 9 C -0.069 4.069 10 N -0.258 5.258 11 C 0.052 3.948 12 C -0.552 4.552 13 H 0.066 0.934 14 C -0.193 4.193 15 N -0.573 5.573 16 Si 0.783 3.217 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.204 1.204 20 C -0.056 4.056 21 C -0.098 4.098 22 C -0.211 4.211 23 C -0.189 4.189 24 C -0.221 4.221 25 C -0.151 4.151 26 H 0.113 0.887 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.161 0.839 32 H 0.165 0.835 33 H 0.137 0.863 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.011 0.989 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.057 0.943 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.091 0.909 48 H 0.079 0.921 49 H 0.057 0.943 50 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -19.353 -9.734 -8.842 23.398 hybrid contribution 1.936 -0.214 0.623 2.045 sum -17.417 -9.949 -8.220 21.677 Atomic orbital electron populations 1.21541 0.90552 1.04111 1.03136 1.23693 1.01278 0.93885 1.06232 1.85500 0.97484 1.14961 1.92956 1.21830 0.97169 0.96610 1.05004 1.21363 0.96009 0.95740 1.03569 1.21259 0.93083 0.99158 0.98643 1.21287 1.00320 0.92462 1.00902 1.19881 0.93598 0.94915 0.97264 1.21895 0.98068 0.94907 0.92041 1.62094 1.03188 1.36074 1.24396 1.20294 0.85367 0.93893 0.95228 1.21587 1.07149 1.32068 0.94422 0.93369 1.25727 0.96344 0.95402 1.01853 1.70059 1.14792 1.36835 1.35618 0.85515 0.77956 0.77765 0.80463 1.19481 1.20606 1.20426 1.22247 0.93187 0.93118 0.97043 1.21119 0.95406 0.96742 0.96530 1.22672 0.98693 1.01333 0.98400 1.21809 1.00331 0.95937 1.00799 1.22814 0.97238 1.02222 0.99794 1.21615 0.92631 0.99500 1.01335 0.88683 0.91907 0.91585 0.88495 0.88988 0.83922 0.83502 0.86251 0.92401 0.88866 0.98908 0.94968 0.92969 0.91297 0.93083 0.91449 0.91126 0.90838 0.94330 0.91580 0.91565 0.90937 0.92077 0.94274 0.83213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 9.92 71.98 0.71 -0.71 16 2 C -0.10 -1.46 5.05 71.98 0.36 -1.10 16 3 S -0.15 -3.33 21.92 -56.49 -1.24 -4.57 16 4 C -0.09 -2.50 6.11 22.62 0.14 -2.36 16 5 C -0.14 -3.39 9.36 22.41 0.21 -3.18 16 6 C -0.10 -2.54 10.04 22.25 0.22 -2.31 16 7 C -0.13 -3.92 9.66 22.30 0.22 -3.71 16 8 C -0.05 -1.78 5.30 -19.89 -0.11 -1.88 16 9 C 0.06 2.10 3.71 85.55 0.32 2.42 16 10 N -0.53 -23.15 4.46 -905.36 -4.04 -27.19 16 11 C 0.18 9.22 3.40 85.56 0.29 9.52 16 12 C -0.51 -29.69 8.94 25.60 0.23 -29.46 16 13 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 14 C 0.00 0.24 5.46 84.66 0.46 0.70 16 15 N -0.93 -55.97 13.29 21.45 0.28 -55.69 16 16 Si 0.96 45.57 29.54 68.60 2.03 47.60 16 17 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 20 C 0.07 2.78 4.85 86.30 0.42 3.20 16 21 C -0.10 -3.06 0.77 -52.18 -0.04 -3.10 16 22 C -0.16 -4.02 6.39 71.98 0.46 -3.56 16 23 C -0.13 -3.76 8.19 71.98 0.59 -3.17 16 24 C -0.16 -5.91 6.20 71.98 0.45 -5.46 16 25 C -0.13 -3.84 7.42 22.41 0.17 -3.67 16 26 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.10 1.19 7.75 -2.39 -0.02 1.17 16 30 H 0.09 1.24 7.75 -2.39 -0.02 1.22 16 31 H 0.14 2.51 5.88 -2.91 -0.02 2.49 16 32 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 33 H 0.12 3.59 8.02 -2.91 -0.02 3.57 16 34 H 0.06 2.24 7.22 -2.39 -0.02 2.22 16 35 H 0.09 3.11 2.35 -2.39 -0.01 3.10 16 36 H -0.01 -0.41 7.37 -2.39 -0.02 -0.42 16 37 H 0.03 1.73 3.84 -2.38 -0.01 1.72 16 38 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 39 H 0.07 2.48 6.10 -2.39 -0.01 2.46 16 40 H 0.05 2.22 7.36 -2.39 -0.02 2.20 16 41 H 0.07 1.65 6.41 -2.39 -0.02 1.63 16 42 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.07 2.00 3.59 -2.38 -0.01 1.99 16 44 H 0.04 1.25 8.09 -2.39 -0.02 1.23 16 45 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.07 2.90 2.69 -2.39 -0.01 2.89 16 48 H 0.06 1.86 7.94 -2.39 -0.02 1.84 16 49 H 0.04 1.61 6.75 -2.39 -0.02 1.60 16 50 H 0.15 4.32 2.66 -2.91 -0.01 4.31 16 Total: -1.00 -65.48 376.14 3.07 -62.41 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.94 Total: 25.28 kcal Atomic # 6 Polarization: -52.95 SS G_CDS: 5.10 Total: -47.85 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -3.76 Total: -82.88 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 16 Polarization: -3.33 SS G_CDS: -1.24 Total: -4.57 kcal Total: -65.48 3.07 -62.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180030142.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.308 kcal (2) G-P(sol) polarization free energy of solvation -65.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds