Wall clock time and date at job start Sat Apr 11 2020 00:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.52993 * 109.46976 * 240.00373 * 2 1 3 5 5 C 1.53004 * 109.47148 * 174.99788 * 4 2 1 6 6 C 1.53003 * 109.47286 * 179.97438 * 5 4 2 7 7 C 1.54263 * 110.03376 * 292.90841 * 6 5 4 8 8 C 1.54958 * 104.16009 * 217.13570 * 7 6 5 9 9 C 1.54883 * 102.77961 * 37.89024 * 8 7 6 10 10 C 1.53875 * 110.03041 * 175.69271 * 6 5 4 11 11 N 1.46497 * 109.47086 * 119.99739 * 2 1 3 12 12 C 1.39927 * 120.00466 * 275.00117 * 11 2 1 13 13 C 1.38717 * 120.07586 * 359.97438 * 12 11 2 14 14 C 1.38214 * 120.01425 * 179.97438 * 13 12 11 15 15 C 1.38529 * 120.17823 * 0.02562 * 14 13 12 16 16 F 1.35103 * 119.92136 * 179.97438 * 15 14 13 17 17 C 1.38356 * 120.15827 * 0.02562 * 15 14 13 18 18 C 1.38722 * 119.98082 * 359.69943 * 17 15 14 19 19 O 1.35786 * 120.09084 * 180.29890 * 18 17 15 20 20 C 1.34806 * 116.99963 * 354.39911 * 19 18 17 21 21 H 1.08004 * 119.99819 * 5.06223 * 20 19 18 22 22 C 1.38630 * 120.00306 * 185.06323 * 20 19 18 23 23 N 1.31575 * 119.99753 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00188 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46975 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47156 * 119.99888 * 24 22 20 27 27 H 1.48499 * 109.47257 * 240.00154 * 24 22 20 28 28 H 1.09004 * 109.47408 * 300.00247 * 1 2 3 29 29 H 1.09003 * 109.47336 * 59.99911 * 1 2 3 30 30 H 1.09001 * 109.47331 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47074 * 294.99459 * 4 2 1 32 32 H 1.09001 * 109.47549 * 54.99966 * 4 2 1 33 33 H 1.08998 * 109.47240 * 300.00243 * 5 4 2 34 34 H 1.09001 * 109.46751 * 59.99688 * 5 4 2 35 35 H 1.09002 * 110.01271 * 54.30308 * 6 5 4 36 36 H 1.09005 * 110.48588 * 335.78413 * 7 6 5 37 37 H 1.09005 * 110.48556 * 98.42439 * 7 6 5 38 38 H 1.09004 * 110.72263 * 279.57452 * 8 7 6 39 39 H 1.08999 * 110.92335 * 156.29824 * 8 7 6 40 40 H 1.08997 * 110.49031 * 203.40670 * 9 8 7 41 41 H 1.09002 * 110.60429 * 80.81370 * 9 8 7 42 42 H 1.09002 * 110.02982 * 238.57062 * 10 6 5 43 43 H 1.08997 * 110.03366 * 0.02562 * 10 6 5 44 44 H 0.97001 * 119.99675 * 94.99992 * 11 2 1 45 45 H 1.07997 * 119.99192 * 0.02562 * 13 12 11 46 46 H 1.07999 * 119.90789 * 180.02562 * 14 13 12 47 47 H 1.07994 * 120.00575 * 179.97438 * 17 15 14 48 48 H 0.96998 * 119.99816 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2492 5 6 3.5648 -0.6131 -1.3138 6 6 4.0748 -1.3349 -2.5627 7 6 3.8309 -2.8525 -2.4327 8 6 5.0788 -3.4947 -3.0897 9 6 6.2237 -2.5510 -2.6453 10 6 5.5955 -1.1431 -2.6982 11 7 2.0183 -0.6905 1.1962 12 6 2.1519 0.0075 2.4015 13 6 1.8230 1.3535 2.4655 14 6 1.9550 2.0416 3.6569 15 6 2.4160 1.3908 4.7896 16 9 2.5435 2.0686 5.9513 17 6 2.7472 0.0486 4.7337 18 6 2.6118 -0.6498 3.5428 19 8 2.9304 -1.9685 3.4869 20 6 3.4816 -2.5123 4.5905 21 1 3.5758 -1.9253 5.4922 22 6 3.9273 -3.8247 4.5680 23 7 3.8129 -4.5396 3.4694 24 14 4.6916 -4.5779 6.0971 25 1 4.7045 -3.5730 7.1903 26 1 3.8945 -5.7576 6.5192 27 1 6.0829 -5.0020 5.7975 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.7516 -1.7715 -1.2056 32 1 1.6053 -0.2616 -2.1370 33 1 3.8531 0.4371 -1.3573 34 1 3.9994 -1.0727 -0.4260 35 1 3.5695 -0.9499 -3.4485 36 1 3.7622 -3.1394 -1.3834 37 1 2.9261 -3.1407 -2.9680 38 1 4.9829 -3.5011 -4.1755 39 1 5.2416 -4.5041 -2.7119 40 1 7.0644 -2.6198 -3.3357 41 1 6.5441 -2.7879 -1.6307 42 1 5.8283 -0.6658 -3.6501 43 1 5.9702 -0.5362 -1.8739 44 1 2.2490 -1.6317 1.1526 45 1 1.4629 1.8638 1.5844 46 1 1.6980 3.0895 3.7049 47 1 3.1067 -0.4562 5.6181 48 1 4.1245 -5.4581 3.4537 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180724302.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:36:32 Heat of formation + Delta-G solvation = -79.210252 kcal Electronic energy + Delta-G solvation = -27545.611586 eV Core-core repulsion = 23707.173790 eV Total energy + Delta-G solvation = -3838.437796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.185 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.02514 -39.33886 -38.54173 -37.01901 -35.71199 -32.63069 -32.26093 -30.52767 -29.25291 -28.66341 -27.23900 -26.87750 -25.36916 -23.02567 -22.27307 -21.22794 -20.69557 -19.94075 -19.43751 -18.15697 -17.61553 -16.35644 -15.87227 -15.69751 -15.14409 -15.04511 -14.80903 -14.64924 -14.20600 -13.88551 -13.83704 -13.68090 -13.39019 -13.26078 -13.10260 -12.79511 -12.52466 -12.15140 -12.01227 -11.90947 -11.72929 -11.42993 -11.33709 -11.08263 -11.06391 -10.98969 -10.92888 -10.74199 -10.59053 -10.50966 -10.46790 -10.36851 -10.19746 -10.13269 -9.55667 -9.20476 -8.85022 -7.71343 -6.47984 -6.39599 -4.02218 2.14727 2.26583 3.11595 3.14392 3.19358 3.93440 4.06412 4.49183 4.57812 4.68722 4.72924 4.97215 5.02588 5.09291 5.21967 5.23594 5.31055 5.46984 5.48804 5.55649 5.61249 5.64636 5.69975 5.71949 5.73283 5.81687 5.87228 5.89398 5.93213 5.97158 6.01527 6.13122 6.14790 6.18409 6.24095 6.31964 6.40813 6.41693 6.45656 6.54921 6.61073 6.63746 6.84352 7.05546 7.12869 7.27321 7.65486 7.94300 8.09712 8.47672 8.99350 9.65935 10.70143 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.008178 B = 0.004639 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3422.994401 B = 6034.936034 C = 8452.530734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.153 3.847 3 H 0.071 0.929 4 C -0.124 4.124 5 C -0.112 4.112 6 C -0.090 4.090 7 C -0.121 4.121 8 C -0.125 4.125 9 C -0.126 4.126 10 C -0.121 4.121 11 N -0.737 5.737 12 C 0.158 3.842 13 C -0.149 4.149 14 C -0.194 4.194 15 C 0.083 3.917 16 F -0.159 7.159 17 C -0.241 4.241 18 C 0.120 3.880 19 O -0.176 6.176 20 C -0.385 4.385 21 H 0.091 0.909 22 C 0.040 3.960 23 N -0.863 5.863 24 Si 0.938 3.062 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.276 1.276 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.407 0.593 45 H 0.121 0.879 46 H 0.115 0.885 47 H 0.137 0.863 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.032 6.000 -12.156 13.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.047 3.953 3 H 0.089 0.911 4 C -0.162 4.162 5 C -0.149 4.149 6 C -0.108 4.108 7 C -0.159 4.159 8 C -0.163 4.163 9 C -0.163 4.163 10 C -0.159 4.159 11 N -0.370 5.370 12 C 0.057 3.943 13 C -0.173 4.173 14 C -0.215 4.215 15 C 0.062 3.938 16 F -0.138 7.138 17 C -0.262 4.262 18 C 0.064 3.936 19 O -0.081 6.081 20 C -0.461 4.461 21 H 0.108 0.892 22 C -0.164 4.164 23 N -0.498 5.498 24 Si 0.763 3.237 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.202 1.202 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.244 0.756 45 H 0.139 0.861 46 H 0.133 0.867 47 H 0.154 0.846 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.049 5.723 -12.499 13.787 hybrid contribution 0.471 -0.555 1.091 1.311 sum -0.578 5.168 -11.408 12.537 Atomic orbital electron populations 1.22314 0.96763 1.02214 1.01489 1.20764 0.92905 0.96594 0.85012 0.91056 1.21867 0.96110 1.01348 0.96865 1.21714 0.95101 1.00143 0.97979 1.21775 0.95360 0.95692 0.98002 1.22493 0.97329 0.94471 1.01602 1.22486 0.95284 0.98767 0.99733 1.22354 0.97532 0.94984 1.01471 1.22210 0.95144 0.97217 1.01296 1.44450 1.74110 1.12656 1.05826 1.17100 1.01195 0.91071 0.84939 1.19957 1.07794 0.91986 0.97570 1.20295 1.09249 0.99693 0.92227 1.17231 1.04876 0.90268 0.81432 1.91375 1.94394 1.80269 1.47724 1.20791 1.12249 0.93375 0.99791 1.18605 0.97690 0.85856 0.91399 1.83887 1.69418 1.15909 1.38847 1.21321 1.38823 0.96319 0.89652 0.89157 1.25213 0.97044 0.95425 0.98679 1.70027 1.43994 1.09289 1.26476 0.85681 0.78708 0.79228 0.80082 1.19085 1.20203 1.20192 0.92230 0.92655 0.92495 0.91323 0.91325 0.92368 0.90801 0.91651 0.90730 0.92110 0.92099 0.91731 0.92264 0.91391 0.92407 0.91668 0.75648 0.86124 0.86682 0.84561 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 9.43 37.16 0.35 -1.73 16 2 C 0.15 2.04 2.27 -67.94 -0.15 1.89 16 3 H 0.07 0.93 6.49 -51.93 -0.34 0.59 16 4 C -0.12 -1.44 4.60 -26.73 -0.12 -1.57 16 5 C -0.11 -1.38 4.23 -26.73 -0.11 -1.49 16 6 C -0.09 -1.00 2.93 -89.50 -0.26 -1.26 16 7 C -0.12 -1.43 5.50 -25.04 -0.14 -1.57 16 8 C -0.13 -1.38 6.91 -24.70 -0.17 -1.55 16 9 C -0.13 -1.42 6.83 -25.08 -0.17 -1.59 16 10 C -0.12 -1.34 6.46 -25.61 -0.17 -1.50 16 11 N -0.74 -12.83 4.70 -52.00 -0.24 -13.08 16 12 C 0.16 3.15 6.66 -83.52 -0.56 2.59 16 13 C -0.15 -2.62 8.85 -39.41 -0.35 -2.97 16 14 C -0.19 -3.53 10.02 -39.48 -0.40 -3.93 16 15 C 0.08 1.70 7.29 -39.43 -0.29 1.41 16 16 F -0.16 -3.18 17.26 2.25 0.04 -3.14 16 17 C -0.24 -5.43 9.14 -39.36 -0.36 -5.79 16 18 C 0.12 2.80 6.66 -38.93 -0.26 2.54 16 19 O -0.18 -4.72 9.00 0.01 0.00 -4.72 16 20 C -0.38 -10.46 9.49 30.88 0.29 -10.17 16 21 H 0.09 2.34 5.21 -52.48 -0.27 2.07 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -24.14 13.67 55.48 0.76 -23.39 16 24 Si 0.94 20.38 29.55 -169.99 -5.02 15.36 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 26 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 27 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 28 H 0.06 0.79 7.72 -51.93 -0.40 0.39 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.85 7.48 -51.93 -0.39 0.46 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.13 7.63 -51.93 -0.40 0.73 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.04 7.77 -51.93 -0.40 0.64 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.76 7.67 -51.93 -0.40 0.36 16 44 H 0.41 7.90 7.97 -40.82 -0.33 7.57 16 45 H 0.12 1.78 6.12 -52.49 -0.32 1.46 16 46 H 0.12 1.80 8.06 -52.49 -0.42 1.37 16 47 H 0.14 3.14 5.64 -52.49 -0.30 2.84 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -27.95 383.91 -9.39 -37.34 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -7.75 Total: 11.54 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: -2.96 Total: -25.71 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.51 Total: -36.46 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: 0.00 Total: -4.72 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.04 Total: -3.14 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -27.95 -9.39 -37.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180724302.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.872 kcal (2) G-P(sol) polarization free energy of solvation -27.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds