Wall clock time and date at job start Sat Apr 11 2020 00:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.52993 * 109.46976 * 240.00373 * 2 1 3 5 5 C 1.53004 * 109.47148 * 174.99788 * 4 2 1 6 6 C 1.53003 * 109.47286 * 179.97438 * 5 4 2 7 7 C 1.54263 * 110.03376 * 292.90841 * 6 5 4 8 8 C 1.54958 * 104.16009 * 217.13570 * 7 6 5 9 9 C 1.54883 * 102.77961 * 37.89024 * 8 7 6 10 10 C 1.53875 * 110.03041 * 175.69271 * 6 5 4 11 11 N 1.46497 * 109.47086 * 119.99739 * 2 1 3 12 12 C 1.39927 * 120.00466 * 275.00117 * 11 2 1 13 13 C 1.38717 * 120.07586 * 359.97438 * 12 11 2 14 14 C 1.38214 * 120.01425 * 179.97438 * 13 12 11 15 15 C 1.38529 * 120.17823 * 0.02562 * 14 13 12 16 16 F 1.35103 * 119.92136 * 179.97438 * 15 14 13 17 17 C 1.38356 * 120.15827 * 0.02562 * 15 14 13 18 18 C 1.38722 * 119.98082 * 359.69943 * 17 15 14 19 19 O 1.35786 * 120.09084 * 180.29890 * 18 17 15 20 20 C 1.34806 * 116.99963 * 354.39911 * 19 18 17 21 21 H 1.08004 * 119.99819 * 5.06223 * 20 19 18 22 22 C 1.38630 * 120.00306 * 185.06323 * 20 19 18 23 23 N 1.31575 * 119.99753 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00188 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46975 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47156 * 119.99888 * 24 22 20 27 27 H 1.48499 * 109.47257 * 240.00154 * 24 22 20 28 28 H 1.09004 * 109.47408 * 300.00247 * 1 2 3 29 29 H 1.09003 * 109.47336 * 59.99911 * 1 2 3 30 30 H 1.09001 * 109.47331 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47074 * 294.99459 * 4 2 1 32 32 H 1.09001 * 109.47549 * 54.99966 * 4 2 1 33 33 H 1.08998 * 109.47240 * 300.00243 * 5 4 2 34 34 H 1.09001 * 109.46751 * 59.99688 * 5 4 2 35 35 H 1.09002 * 110.01271 * 54.30308 * 6 5 4 36 36 H 1.09005 * 110.48588 * 335.78413 * 7 6 5 37 37 H 1.09005 * 110.48556 * 98.42439 * 7 6 5 38 38 H 1.09004 * 110.72263 * 279.57452 * 8 7 6 39 39 H 1.08999 * 110.92335 * 156.29824 * 8 7 6 40 40 H 1.08997 * 110.49031 * 203.40670 * 9 8 7 41 41 H 1.09002 * 110.60429 * 80.81370 * 9 8 7 42 42 H 1.09002 * 110.02982 * 238.57062 * 10 6 5 43 43 H 1.08997 * 110.03366 * 0.02562 * 10 6 5 44 44 H 0.97001 * 119.99675 * 94.99992 * 11 2 1 45 45 H 1.07997 * 119.99192 * 0.02562 * 13 12 11 46 46 H 1.07999 * 119.90789 * 180.02562 * 14 13 12 47 47 H 1.07994 * 120.00575 * 179.97438 * 17 15 14 48 48 H 0.96998 * 119.99816 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2492 5 6 3.5648 -0.6131 -1.3138 6 6 4.0748 -1.3349 -2.5627 7 6 3.8309 -2.8525 -2.4327 8 6 5.0788 -3.4947 -3.0897 9 6 6.2237 -2.5510 -2.6453 10 6 5.5955 -1.1431 -2.6982 11 7 2.0183 -0.6905 1.1962 12 6 2.1519 0.0075 2.4015 13 6 1.8230 1.3535 2.4655 14 6 1.9550 2.0416 3.6569 15 6 2.4160 1.3908 4.7896 16 9 2.5435 2.0686 5.9513 17 6 2.7472 0.0486 4.7337 18 6 2.6118 -0.6498 3.5428 19 8 2.9304 -1.9685 3.4869 20 6 3.4816 -2.5123 4.5905 21 1 3.5758 -1.9253 5.4922 22 6 3.9273 -3.8247 4.5680 23 7 3.8129 -4.5396 3.4694 24 14 4.6916 -4.5779 6.0971 25 1 4.7045 -3.5730 7.1903 26 1 3.8945 -5.7576 6.5192 27 1 6.0829 -5.0020 5.7975 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.7516 -1.7715 -1.2056 32 1 1.6053 -0.2616 -2.1370 33 1 3.8531 0.4371 -1.3573 34 1 3.9994 -1.0727 -0.4260 35 1 3.5695 -0.9499 -3.4485 36 1 3.7622 -3.1394 -1.3834 37 1 2.9261 -3.1407 -2.9680 38 1 4.9829 -3.5011 -4.1755 39 1 5.2416 -4.5041 -2.7119 40 1 7.0644 -2.6198 -3.3357 41 1 6.5441 -2.7879 -1.6307 42 1 5.8283 -0.6658 -3.6501 43 1 5.9702 -0.5362 -1.8739 44 1 2.2490 -1.6317 1.1526 45 1 1.4629 1.8638 1.5844 46 1 1.6980 3.0895 3.7049 47 1 3.1067 -0.4562 5.6181 48 1 4.1245 -5.4581 3.4537 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180724302.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:36:31 Heat of formation + Delta-G solvation = -92.143504 kcal Electronic energy + Delta-G solvation = -27546.172414 eV Core-core repulsion = 23707.173790 eV Total energy + Delta-G solvation = -3838.998624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.185 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.62752 -40.94222 -39.59046 -38.50241 -37.13922 -34.28257 -33.79163 -31.68760 -30.91476 -29.58300 -28.63045 -27.98724 -27.27667 -24.19122 -23.71608 -22.77723 -21.71729 -21.10996 -20.37329 -19.97839 -19.31470 -17.82763 -17.32360 -16.95275 -16.66825 -16.44607 -16.07020 -15.98983 -15.85606 -15.43166 -15.28258 -15.06902 -14.86747 -14.41654 -14.16185 -14.09127 -13.90439 -13.63198 -13.47851 -13.18537 -13.00054 -12.86371 -12.66854 -12.53365 -12.20949 -12.12778 -12.02936 -11.97720 -11.88112 -11.75834 -11.54235 -11.45852 -11.42992 -11.20058 -11.10309 -10.79619 -10.62665 -9.40929 -8.46338 -7.96599 -6.07873 0.50913 0.64345 1.33872 1.39926 1.49950 2.15509 2.67336 2.79091 3.12215 3.35703 3.63302 3.66984 3.76677 3.79809 3.98942 4.06672 4.19957 4.23286 4.29056 4.47911 4.54214 4.59294 4.60055 4.62242 4.74574 4.76889 4.80341 4.82434 4.93456 4.95073 5.00938 5.02746 5.06525 5.08828 5.11157 5.17399 5.25676 5.28605 5.35546 5.36832 5.44394 5.46145 5.47298 5.49183 5.52284 5.66047 5.98006 6.07604 6.65399 6.89614 6.99750 7.77376 8.75392 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.008178 B = 0.004639 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3422.994401 B = 6034.936034 C = 8452.530734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.148 3.852 3 H 0.086 0.914 4 C -0.116 4.116 5 C -0.107 4.107 6 C -0.085 4.085 7 C -0.123 4.123 8 C -0.124 4.124 9 C -0.129 4.129 10 C -0.121 4.121 11 N -0.737 5.737 12 C 0.161 3.839 13 C -0.139 4.139 14 C -0.163 4.163 15 C 0.059 3.941 16 F -0.157 7.157 17 C -0.247 4.247 18 C 0.077 3.923 19 O -0.215 6.215 20 C -0.407 4.407 21 H 0.090 0.910 22 C -0.014 4.014 23 N -0.909 5.909 24 Si 1.008 2.992 25 H -0.259 1.259 26 H -0.268 1.268 27 H -0.269 1.269 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.032 0.968 35 H 0.089 0.911 36 H 0.039 0.961 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.042 0.958 42 H 0.079 0.921 43 H 0.051 0.949 44 H 0.393 0.607 45 H 0.162 0.838 46 H 0.155 0.845 47 H 0.119 0.881 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.920 8.580 -14.197 16.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 H 0.104 0.896 4 C -0.154 4.154 5 C -0.145 4.145 6 C -0.103 4.103 7 C -0.161 4.161 8 C -0.161 4.161 9 C -0.167 4.167 10 C -0.159 4.159 11 N -0.367 5.367 12 C 0.058 3.942 13 C -0.163 4.163 14 C -0.183 4.183 15 C 0.038 3.962 16 F -0.136 7.136 17 C -0.268 4.268 18 C 0.024 3.976 19 O -0.122 6.122 20 C -0.483 4.483 21 H 0.108 0.892 22 C -0.213 4.213 23 N -0.547 5.547 24 Si 0.828 3.172 25 H -0.183 1.183 26 H -0.193 1.193 27 H -0.194 1.194 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.108 0.892 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.097 0.903 43 H 0.070 0.930 44 H 0.227 0.773 45 H 0.179 0.821 46 H 0.173 0.827 47 H 0.137 0.863 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.963 8.362 -14.562 16.906 hybrid contribution 0.657 -1.112 1.627 2.077 sum -1.307 7.250 -12.934 14.885 Atomic orbital electron populations 1.22262 0.95413 1.01851 1.02670 1.21105 0.93815 0.96926 0.83801 0.89618 1.21839 0.95469 1.00808 0.97293 1.21634 0.95613 1.00264 0.96955 1.21767 0.95633 0.94760 0.98124 1.22469 0.98428 0.95473 0.99691 1.22503 0.94606 0.98147 1.00860 1.22373 0.98355 0.95500 1.00474 1.22229 0.94983 0.96770 1.01876 1.44744 1.73391 1.12139 1.06451 1.17423 0.99898 0.92036 0.84843 1.20400 1.06298 0.90704 0.98882 1.20796 1.05281 1.01289 0.90902 1.17331 1.06609 0.89666 0.82579 1.91374 1.94530 1.79922 1.47772 1.20840 1.12220 0.94638 0.99128 1.19095 0.99864 0.85404 0.93200 1.83857 1.71606 1.17786 1.38935 1.21653 1.39485 0.97010 0.90151 0.89225 1.26309 0.97403 0.95561 1.01990 1.70150 1.46082 1.09745 1.28757 0.84671 0.77942 0.78381 0.76175 1.18319 1.19279 1.19378 0.93101 0.89310 0.93732 0.92533 0.87990 0.91540 0.94906 0.89234 0.94240 0.90838 0.89928 0.92589 0.90575 0.93921 0.90255 0.92985 0.77317 0.82087 0.82693 0.86335 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 9.43 71.98 0.68 -2.86 16 2 C 0.15 3.61 2.27 44.99 0.10 3.71 16 3 H 0.09 1.88 6.49 -2.39 -0.02 1.86 16 4 C -0.12 -2.49 4.60 30.59 0.14 -2.34 16 5 C -0.11 -2.57 4.23 30.60 0.13 -2.44 16 6 C -0.08 -1.76 2.93 -10.07 -0.03 -1.79 16 7 C -0.12 -2.91 5.50 31.69 0.17 -2.73 16 8 C -0.12 -2.67 6.91 31.91 0.22 -2.45 16 9 C -0.13 -2.90 6.83 31.67 0.22 -2.69 16 10 C -0.12 -2.53 6.46 31.32 0.20 -2.33 16 11 N -0.74 -25.93 4.70 -318.43 -1.50 -27.43 16 12 C 0.16 6.40 6.66 38.27 0.25 6.65 16 13 C -0.14 -4.48 8.85 22.38 0.20 -4.28 16 14 C -0.16 -5.38 10.02 22.33 0.22 -5.15 16 15 C 0.06 2.38 7.29 22.37 0.16 2.55 16 16 F -0.16 -6.13 17.26 44.97 0.78 -5.35 16 17 C -0.25 -11.55 9.14 22.41 0.20 -11.35 16 18 C 0.08 3.77 6.66 22.69 0.15 3.92 16 19 O -0.22 -12.34 9.00 -22.89 -0.21 -12.55 16 20 C -0.41 -23.56 9.49 67.91 0.64 -22.92 16 21 H 0.09 4.99 5.21 -2.91 -0.02 4.97 16 22 C -0.01 -0.80 5.49 84.82 0.47 -0.34 16 23 N -0.91 -54.01 13.67 21.61 0.30 -53.72 16 24 Si 1.01 43.52 29.55 68.60 2.03 45.54 16 25 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 28 H 0.05 1.20 7.72 -2.39 -0.02 1.18 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.37 7.48 -2.38 -0.02 1.35 16 32 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.03 1.05 7.63 -2.39 -0.02 1.03 16 35 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.04 1.20 7.77 -2.38 -0.02 1.18 16 37 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.04 1.14 8.14 -2.39 -0.02 1.13 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.05 1.21 7.67 -2.39 -0.02 1.20 16 44 H 0.39 16.26 7.97 -92.71 -0.74 15.52 16 45 H 0.16 3.91 6.12 -2.91 -0.02 3.89 16 46 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 47 H 0.12 5.83 5.64 -2.91 -0.02 5.81 16 48 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -66.00 383.91 5.76 -60.24 By element: Atomic # 1 Polarization: 39.90 SS G_CDS: 0.22 Total: 40.11 kcal Atomic # 6 Polarization: -50.99 SS G_CDS: 4.14 Total: -46.85 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -1.20 Total: -81.15 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.21 Total: -12.55 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.78 Total: -5.35 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -66.00 5.76 -60.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180724302.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.903 kcal (2) G-P(sol) polarization free energy of solvation -65.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds