Wall clock time and date at job start Sat Apr 11 2020 00:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36595 * 126.58407 * 2 1 4 4 C 1.47525 * 125.76879 * 0.03588 * 3 2 1 5 5 O 1.21604 * 119.99582 * 353.68253 * 4 3 2 6 6 N 1.34769 * 120.00146 * 173.68099 * 4 3 2 7 7 C 1.46930 * 120.62883 * 353.86246 * 6 4 3 8 8 C 1.53191 * 108.77215 * 126.37170 * 7 6 4 9 9 C 1.53036 * 109.31828 * 54.63463 * 8 7 6 10 10 H 1.09002 * 109.44414 * 58.64418 * 9 8 7 11 11 C 1.52998 * 109.46106 * 178.61364 * 9 8 7 12 12 N 1.46501 * 109.47112 * 295.06642 * 11 9 8 13 13 C 1.36934 * 119.99849 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00065 * 359.97438 * 13 12 11 15 15 C 1.38812 * 119.99825 * 180.02562 * 13 12 11 16 16 N 1.31612 * 120.00164 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00050 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47118 * 270.00054 * 17 15 13 19 19 H 1.48507 * 109.46804 * 29.99901 * 17 15 13 20 20 H 1.48501 * 109.47407 * 149.99434 * 17 15 13 21 21 C 1.53041 * 109.53661 * 298.63327 * 9 8 7 22 22 H 1.08998 * 109.49646 * 181.34513 * 21 9 8 23 23 C 1.53002 * 109.49752 * 301.41299 * 21 9 8 24 24 C 1.46926 * 120.62948 * 173.83943 * 6 4 3 25 25 N 1.34399 * 108.45872 * 179.77505 * 3 2 1 26 26 N 1.28754 * 109.52653 * 0.22266 * 25 3 2 27 27 N 1.34819 * 126.57464 * 180.16374 * 2 1 3 28 28 C 1.46495 * 126.59784 * 0.02562 * 27 2 1 29 29 H 1.08999 * 109.46918 * 90.00023 * 1 2 3 30 30 H 1.08998 * 109.47049 * 210.00236 * 1 2 3 31 31 H 1.08999 * 109.46997 * 329.99869 * 1 2 3 32 32 H 1.08999 * 109.58505 * 246.15236 * 7 6 4 33 33 H 1.08997 * 109.58767 * 6.44005 * 7 6 4 34 34 H 1.09005 * 109.49875 * 294.67923 * 8 7 6 35 35 H 1.09002 * 109.49590 * 174.58888 * 8 7 6 36 36 H 1.09002 * 109.47038 * 175.06557 * 11 9 8 37 37 H 1.08997 * 109.46975 * 55.06966 * 11 9 8 38 38 H 0.96995 * 119.99893 * 0.02562 * 12 11 9 39 39 H 0.97000 * 120.00390 * 0.02562 * 16 15 13 40 40 H 1.08997 * 109.46882 * 60.00308 * 23 21 9 41 41 H 1.08999 * 109.47089 * 179.97438 * 23 21 9 42 42 H 1.08992 * 109.47054 * 299.99688 * 23 21 9 43 43 H 1.09004 * 109.58453 * 113.84936 * 24 6 4 44 44 H 1.08993 * 109.70895 * 353.48610 * 24 6 4 45 45 H 1.09004 * 109.47059 * 270.27002 * 28 27 2 46 46 H 1.09001 * 109.47379 * 30.26859 * 28 27 2 47 47 H 1.09001 * 109.47302 * 150.27212 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3212 1.0968 0.0000 4 6 1.8739 2.5027 0.0007 5 8 0.6921 2.7647 -0.1144 6 7 2.7751 3.4964 0.1291 7 6 4.1870 3.1958 0.4032 8 6 5.0529 3.8912 -0.6520 9 6 4.7213 5.3850 -0.6747 10 1 4.9008 5.8116 0.3122 11 6 5.6088 6.0886 -1.7033 12 7 7.0083 6.0072 -1.2779 13 6 7.9914 6.5713 -2.0462 14 1 7.7351 7.0759 -2.9660 15 6 9.3175 6.4937 -1.6434 16 7 9.6299 5.8783 -0.5227 17 14 10.6588 7.2627 -2.6918 18 1 11.1565 6.2627 -3.6703 19 1 10.1080 8.4348 -3.4186 20 1 11.7778 7.7020 -1.8201 21 6 3.2510 5.5772 -1.0535 22 1 3.0217 6.6421 -1.0928 23 6 2.9901 4.9477 -2.4234 24 6 2.3645 4.9010 -0.0028 25 7 3.5985 0.6787 0.0050 26 7 3.6299 -0.6084 0.0034 27 7 2.3104 -1.0827 -0.0031 28 6 1.8863 -2.4849 -0.0076 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 4.4531 3.5634 1.3942 33 1 4.3467 2.1186 0.3579 34 1 4.8501 3.4586 -1.6318 35 1 6.1060 3.7560 -0.4051 36 1 5.3135 7.1349 -1.7829 37 1 5.4951 5.6043 -2.6731 38 1 7.2385 5.5537 -0.4520 39 1 8.9336 5.4787 0.0216 40 1 3.2185 3.8826 -2.3832 41 1 1.9428 5.0844 -2.6925 42 1 3.6230 5.4271 -3.1700 43 1 2.4822 5.4076 0.9552 44 1 1.3222 4.9512 -0.3172 45 1 1.7761 -2.8345 1.0189 46 1 0.9317 -2.5742 -0.5262 47 1 2.6355 -3.0895 -0.5188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184113049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:36:45 Heat of formation + Delta-G solvation = 81.579591 kcal Electronic energy + Delta-G solvation = -28053.666808 eV Core-core repulsion = 24274.414095 eV Total energy + Delta-G solvation = -3779.252713 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.58342 -40.11963 -38.00319 -35.48894 -34.90396 -33.41879 -32.64519 -31.65794 -30.09920 -28.77341 -27.85112 -26.83386 -26.39521 -23.86488 -23.09503 -22.82422 -21.75302 -21.22319 -20.07652 -18.42387 -17.70493 -17.10830 -16.73474 -16.20238 -15.97322 -15.37321 -15.00122 -14.65478 -14.24091 -14.15937 -14.07688 -13.85925 -13.66494 -13.58214 -13.46397 -13.33092 -13.09396 -12.81857 -12.79460 -12.33412 -12.30732 -11.94976 -11.52083 -11.47076 -10.98743 -10.84746 -10.63637 -10.58207 -10.51985 -10.28225 -10.18498 -10.06018 -9.90158 -9.54864 -9.40193 -9.08862 -8.77891 -8.48416 -6.89378 -6.02265 -3.00584 0.84208 1.49578 1.71451 2.96790 3.16688 3.56376 3.61728 3.75492 3.89360 3.97998 4.25036 4.39581 4.50891 4.73023 4.76368 4.85624 4.97096 5.03422 5.06739 5.08373 5.23666 5.30665 5.34360 5.43779 5.53902 5.67089 5.71978 5.76057 5.79767 5.86089 5.93367 6.01836 6.07660 6.12705 6.26001 6.26849 6.41800 6.43919 6.54311 6.64652 6.73194 6.86910 6.98983 7.38678 7.72372 7.89677 8.11024 8.84535 9.33237 10.19427 10.35269 11.46728 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.018315 B = 0.003014 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.456247 B = 9288.546716 C =10356.110201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.120 3.880 3 C -0.099 4.099 4 C 0.604 3.396 5 O -0.547 6.547 6 N -0.586 5.586 7 C 0.068 3.932 8 C -0.119 4.119 9 C -0.092 4.092 10 H 0.069 0.931 11 C 0.165 3.835 12 N -0.743 5.743 13 C -0.328 4.328 14 H 0.063 0.937 15 C -0.047 4.047 16 N -0.946 5.946 17 Si 1.082 2.918 18 H -0.296 1.296 19 H -0.296 1.296 20 H -0.288 1.288 21 C -0.097 4.097 22 H 0.082 0.918 23 C -0.145 4.145 24 C 0.118 3.882 25 N -0.197 5.197 26 N -0.066 5.066 27 N -0.364 5.364 28 C 0.087 3.913 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.139 0.861 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.016 0.984 37 H 0.022 0.978 38 H 0.366 0.634 39 H 0.255 0.745 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.688 -15.724 2.562 27.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.017 4.017 3 C -0.238 4.238 4 C 0.391 3.609 5 O -0.425 6.425 6 N -0.317 5.317 7 C -0.055 4.055 8 C -0.157 4.157 9 C -0.111 4.111 10 H 0.087 0.913 11 C 0.037 3.963 12 N -0.389 5.389 13 C -0.459 4.459 14 H 0.081 0.919 15 C -0.245 4.245 16 N -0.592 5.592 17 Si 0.914 3.086 18 H -0.224 1.224 19 H -0.223 1.223 20 H -0.214 1.214 21 C -0.117 4.117 22 H 0.100 0.900 23 C -0.202 4.202 24 C -0.004 4.004 25 N -0.069 5.069 26 N -0.044 5.044 27 N -0.151 5.151 28 C -0.054 4.054 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.080 0.920 33 H 0.155 0.845 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.034 0.966 37 H 0.039 0.961 38 H 0.200 0.800 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.115 0.885 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -20.239 -15.651 2.169 25.676 hybrid contribution -2.346 -0.271 0.305 2.381 sum -22.584 -15.922 2.475 27.743 Atomic orbital electron populations 1.20679 0.84619 1.05188 1.04668 1.21891 0.96209 0.86266 0.97350 1.21226 0.88877 0.95473 1.18245 1.16735 0.85165 0.82465 0.76570 1.90732 1.16034 1.83393 1.52340 1.47858 1.09386 1.05819 1.68634 1.22892 0.78479 1.05733 0.98388 1.21863 1.00053 0.94700 0.99129 1.21359 0.93541 0.95983 1.00198 0.91293 1.20640 0.84666 0.96212 0.94748 1.42396 1.01220 1.68485 1.26779 1.20060 0.89255 1.32105 1.04490 0.91916 1.25736 0.97186 1.01424 1.00124 1.70837 1.35063 1.39193 1.14111 0.83200 0.75589 0.75330 0.74524 1.22398 1.22255 1.21440 1.21459 0.95215 0.99849 0.95153 0.90019 1.21862 1.00688 1.01250 0.96432 1.21720 0.99754 0.79933 0.99009 1.74187 1.18532 1.03506 1.10671 1.82085 0.95958 1.03887 1.22498 1.50287 1.06474 1.07761 1.50529 1.22176 1.02486 0.76078 1.04702 0.88966 0.90714 0.87156 0.91958 0.84502 0.91499 0.90087 0.96570 0.96071 0.80012 0.93389 0.92573 0.93329 0.91984 0.91423 0.89090 0.89247 0.88537 0.87914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 9.32 36.01 0.34 -0.27 16 2 C 0.12 1.21 7.02 -81.87 -0.57 0.63 16 3 C -0.10 -1.32 6.75 -83.55 -0.56 -1.88 16 4 C 0.60 8.65 7.68 -12.48 -0.10 8.55 16 5 O -0.55 -8.25 14.25 5.27 0.08 -8.17 16 6 N -0.59 -8.27 2.41 -173.99 -0.42 -8.69 16 7 C 0.07 1.00 6.32 -3.71 -0.02 0.98 16 8 C -0.12 -1.99 4.90 -26.61 -0.13 -2.12 16 9 C -0.09 -1.54 1.96 -90.58 -0.18 -1.72 16 10 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 11 C 0.16 3.46 5.19 -4.04 -0.02 3.44 16 12 N -0.74 -19.31 5.32 -59.91 -0.32 -19.63 16 13 C -0.33 -9.58 9.99 -15.06 -0.15 -9.73 16 14 H 0.06 1.82 7.83 -52.49 -0.41 1.40 16 15 C -0.05 -1.42 5.50 -17.43 -0.10 -1.51 16 16 N -0.95 -29.93 13.70 55.49 0.76 -29.17 16 17 Si 1.08 26.75 29.92 -169.99 -5.09 21.66 16 18 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.30 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 C -0.10 -1.36 2.72 -90.49 -0.25 -1.61 16 22 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 23 C -0.15 -2.05 8.38 37.16 0.31 -1.74 16 24 C 0.12 1.55 5.81 -3.71 -0.02 1.53 16 25 N -0.20 -2.82 8.69 32.85 0.29 -2.54 16 26 N -0.07 -0.85 13.78 60.35 0.83 -0.02 16 27 N -0.36 -3.35 4.03 -63.59 -0.26 -3.60 16 28 C 0.09 0.31 11.17 59.84 0.67 0.98 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.26 7.84 -51.93 -0.41 -0.15 16 31 H 0.11 0.91 6.58 -51.93 -0.34 0.56 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.14 2.07 3.65 -123.12 -0.45 1.62 16 34 H 0.07 1.17 6.34 -51.93 -0.33 0.84 16 35 H 0.08 1.53 7.15 -51.93 -0.37 1.15 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.02 0.46 6.74 -51.93 -0.35 0.11 16 38 H 0.37 9.67 5.67 -40.82 -0.23 9.43 16 39 H 0.25 7.93 6.78 -40.82 -0.28 7.66 16 40 H 0.06 0.86 5.97 -51.93 -0.31 0.55 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.92 6.58 -51.93 -0.34 0.58 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 1.18 7.05 -51.93 -0.37 0.82 16 45 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 46 H 0.10 0.11 7.78 -51.93 -0.40 -0.30 16 47 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 365.36 15.07 5.51 5.51 Total: -1.00 -36.10 365.36 -6.60 -42.69 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -7.19 Total: 6.44 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -0.79 Total: -4.47 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: 0.88 Total: -63.65 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.08 Total: -8.17 kcal Atomic # 14 Polarization: 26.75 SS G_CDS: -5.09 Total: 21.66 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.10 -6.60 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184113049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.272 kcal (2) G-P(sol) polarization free energy of solvation -36.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds