Wall clock time and date at job start Sat Apr 11 2020 00:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30831 * 125.96213 * 2 1 4 4 C 1.33232 * 109.83088 * 180.02562 * 3 2 1 5 5 C 1.50698 * 125.52971 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.47294 * 89.99441 * 5 4 3 7 7 O 1.21279 * 119.99507 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00020 * 180.02562 * 6 5 4 9 9 C 1.46923 * 120.63150 * 359.72421 * 8 6 5 10 10 C 1.53617 * 108.54542 * 126.37048 * 9 8 6 11 11 C 1.53045 * 109.24498 * 54.85351 * 10 9 8 12 12 H 1.08999 * 109.44414 * 58.52649 * 11 10 9 13 13 C 1.53002 * 109.46063 * 178.49471 * 11 10 9 14 14 N 1.46500 * 109.46886 * 295.06770 * 13 11 10 15 15 C 1.36937 * 119.99936 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99663 * 359.97438 * 15 14 13 17 17 C 1.38809 * 120.00015 * 179.97438 * 15 14 13 18 18 N 1.31618 * 120.00319 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99873 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46837 * 60.00469 * 19 17 15 21 21 H 1.48504 * 109.47038 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47387 * 300.00481 * 19 17 15 23 23 C 1.53041 * 109.53554 * 298.51548 * 11 10 9 24 24 H 1.09002 * 109.52483 * 181.33310 * 23 11 10 25 25 C 1.53012 * 109.49663 * 301.41106 * 23 11 10 26 26 C 1.46923 * 120.62774 * 179.97438 * 8 6 5 27 27 N 1.30714 * 108.94920 * 0.25899 * 4 3 2 28 28 N 1.34428 * 125.95816 * 180.02562 * 2 1 3 29 29 H 0.96995 * 126.83094 * 359.97438 * 28 2 1 30 30 H 1.09005 * 109.46924 * 89.97953 * 1 2 3 31 31 H 1.09000 * 109.47032 * 209.97935 * 1 2 3 32 32 H 1.08999 * 109.47299 * 329.97799 * 1 2 3 33 33 H 1.09001 * 109.46665 * 329.99822 * 5 4 3 34 34 H 1.09000 * 109.47722 * 210.00154 * 5 4 3 35 35 H 1.09006 * 109.58416 * 246.20094 * 9 8 6 36 36 H 1.08998 * 109.58688 * 6.62049 * 9 8 6 37 37 H 1.09007 * 109.63010 * 294.86434 * 10 9 8 38 38 H 1.09002 * 109.45914 * 174.74052 * 10 9 8 39 39 H 1.09000 * 109.47240 * 55.06760 * 13 11 10 40 40 H 1.08996 * 109.46496 * 175.06590 * 13 11 10 41 41 H 0.97003 * 120.00193 * 359.97438 * 14 13 11 42 42 H 0.96994 * 120.00591 * 179.97438 * 18 17 15 43 43 H 1.08995 * 109.46799 * 179.84136 * 25 23 11 44 44 H 1.08998 * 109.46979 * 299.84021 * 25 23 11 45 45 H 1.09000 * 109.46618 * 59.84107 * 25 23 11 46 46 H 1.09002 * 109.59193 * 353.37977 * 26 8 6 47 47 H 1.09002 * 109.58352 * 113.65489 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7372 1.6236 -0.0013 6 6 5.1319 1.9356 1.4193 7 8 4.5143 1.4465 2.3415 8 7 6.1710 2.7580 1.6649 9 6 6.9323 3.3532 0.5583 10 6 6.9674 4.8766 0.7531 11 6 7.5254 5.1948 2.1422 12 1 8.5243 4.7693 2.2382 13 6 7.5976 6.7119 2.3273 14 7 8.5649 7.2737 1.3813 15 6 8.7998 8.6227 1.3624 16 1 8.2717 9.2724 2.0446 17 6 9.7168 9.1549 0.4664 18 7 10.3600 8.3632 -0.3653 19 14 10.0367 10.9951 0.4402 20 1 10.5396 11.4290 1.7684 21 1 11.0514 11.3063 -0.5985 22 1 8.7742 11.7128 0.1303 23 6 6.6102 4.5937 3.2114 24 1 6.9949 4.8406 4.2009 25 6 5.1990 5.1642 3.0552 26 6 6.5672 3.0720 3.0444 27 7 3.6195 -0.6168 -0.0065 28 7 2.2964 -1.0881 -0.0005 29 1 2.0094 -2.0146 -0.0006 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3634 0.8898 0.5142 33 1 4.4698 2.5469 -0.5152 34 1 5.5740 1.1509 -0.5155 35 1 7.9484 2.9584 0.5599 36 1 6.4473 3.1155 -0.3884 37 1 5.9586 5.2803 0.6650 38 1 7.6066 5.3253 -0.0073 39 1 6.6153 7.1474 2.1442 40 1 7.9115 6.9390 3.3460 41 1 9.0394 6.6901 0.7688 42 1 11.0004 8.7352 -0.9917 43 1 4.5470 4.7337 3.8151 44 1 5.2298 6.2472 3.1740 45 1 4.8152 4.9180 2.0651 46 1 5.8413 2.6486 3.7386 47 1 7.5529 2.6525 3.2459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184368825.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:36:59 Heat of formation + Delta-G solvation = 52.930675 kcal Electronic energy + Delta-G solvation = -27295.280551 eV Core-core repulsion = 23514.785528 eV Total energy + Delta-G solvation = -3780.495023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.39172 -40.33935 -38.05189 -34.92325 -34.01048 -33.32423 -32.61629 -31.76698 -30.30716 -30.15102 -28.09712 -26.98751 -26.31820 -23.68260 -22.96753 -22.18185 -21.44067 -20.89961 -19.61595 -18.26925 -18.11979 -17.47438 -16.86440 -16.00108 -15.63999 -15.57979 -14.94627 -14.82905 -14.36328 -14.00130 -13.85209 -13.82328 -13.57106 -13.54783 -13.16956 -13.12332 -12.84235 -12.46637 -12.46202 -12.31314 -12.12803 -12.00904 -11.50902 -11.30538 -11.01218 -10.89172 -10.73147 -10.40694 -10.34846 -10.25299 -10.19891 -10.12530 -9.96994 -9.85049 -9.60675 -9.55257 -8.83400 -8.54043 -6.88299 -5.74751 -3.02408 1.33170 2.33882 2.52188 2.61132 3.10327 3.45575 3.49987 3.50864 3.68434 4.24544 4.45300 4.50699 4.60894 4.86933 4.88182 4.97512 5.01169 5.07205 5.13385 5.19183 5.29887 5.34906 5.39224 5.50565 5.57261 5.66153 5.78468 5.85035 5.90330 5.92902 5.99691 6.10041 6.12792 6.16208 6.26487 6.34887 6.43249 6.51855 6.54676 6.71098 6.77371 6.85651 6.98710 7.39575 7.72014 7.85915 8.14877 8.44931 9.55917 10.14638 10.49248 11.48226 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.023674 B = 0.002376 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.454429 B =11783.660277 C =12056.586454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.283 3.717 3 N -0.529 5.529 4 C 0.255 3.745 5 C -0.051 4.051 6 C 0.526 3.474 7 O -0.539 6.539 8 N -0.604 5.604 9 C 0.103 3.897 10 C -0.128 4.128 11 C -0.088 4.088 12 H 0.071 0.929 13 C 0.158 3.842 14 N -0.732 5.732 15 C -0.237 4.237 16 H 0.068 0.932 17 C -0.015 4.015 18 N -0.935 5.935 19 Si 0.906 3.094 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.098 4.098 24 H 0.081 0.919 25 C -0.144 4.144 26 C 0.119 3.881 27 N -0.306 5.306 28 N -0.483 5.483 29 H 0.439 0.561 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.022 0.978 40 H 0.017 0.983 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.047 0.953 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.089 0.911 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.034 -19.805 0.265 26.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.004 3.996 3 N -0.259 5.259 4 C -0.029 4.029 5 C -0.093 4.093 6 C 0.312 3.688 7 O -0.416 6.416 8 N -0.337 5.337 9 C -0.020 4.020 10 C -0.166 4.166 11 C -0.107 4.107 12 H 0.090 0.910 13 C 0.031 3.969 14 N -0.376 5.376 15 C -0.368 4.368 16 H 0.086 0.914 17 C -0.210 4.210 18 N -0.584 5.584 19 Si 0.737 3.263 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.118 4.118 24 H 0.099 0.901 25 C -0.201 4.201 26 C -0.003 4.003 27 N -0.135 5.135 28 N -0.202 5.202 29 H 0.284 0.716 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.040 0.960 40 H 0.034 0.966 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.107 0.893 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.780 -19.902 0.780 26.044 hybrid contribution 0.171 0.273 -0.286 0.431 sum -16.610 -19.629 0.493 25.718 Atomic orbital electron populations 1.20394 0.83623 1.05101 1.04498 1.24374 0.96618 0.82764 0.95834 1.70308 1.01279 1.29527 1.24742 1.23270 0.92639 0.89673 0.97289 1.19966 0.93675 0.98905 0.96739 1.20071 0.79709 0.78627 0.90395 1.90698 1.52828 1.51955 1.46112 1.48042 1.31216 1.46545 1.07917 1.22027 0.96445 0.94751 0.88762 1.22056 1.02696 0.93324 0.98528 1.21299 0.98285 0.97352 0.93772 0.91049 1.20715 0.93207 0.89713 0.93304 1.42375 1.47748 1.05449 1.42040 1.19185 1.18371 0.84085 1.15189 0.91364 1.24713 0.99677 0.97706 0.98950 1.69634 1.30481 1.33709 1.24562 0.86281 0.77497 0.85434 0.77060 1.21353 1.21732 1.21316 1.21463 0.96735 0.93789 0.99781 0.90108 1.21854 0.95476 1.01143 1.01663 1.21656 1.00556 0.95535 0.82601 1.77971 0.96696 1.12237 1.26607 1.47923 1.04268 1.09964 1.58000 0.71576 0.88966 0.89906 0.88254 0.85826 0.86438 0.90828 0.89928 0.91183 0.89345 0.96036 0.96553 0.78305 0.93526 0.93422 0.91994 0.92504 0.89307 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.51 36.01 0.38 0.03 16 2 C 0.28 2.73 8.24 -155.70 -1.28 1.45 16 3 N -0.53 -7.02 11.19 -8.16 -0.09 -7.11 16 4 C 0.25 3.42 6.63 -156.86 -1.04 2.38 16 5 C -0.05 -0.57 4.67 -29.03 -0.14 -0.71 16 6 C 0.53 7.28 7.69 -10.98 -0.08 7.19 16 7 O -0.54 -9.46 15.45 5.56 0.09 -9.38 16 8 N -0.60 -7.52 2.41 -172.54 -0.42 -7.94 16 9 C 0.10 1.14 6.37 -3.49 -0.02 1.12 16 10 C -0.13 -1.80 4.92 -26.39 -0.13 -1.93 16 11 C -0.09 -1.34 1.96 -90.57 -0.18 -1.52 16 12 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 13 C 0.16 3.09 5.19 -4.04 -0.02 3.06 16 14 N -0.73 -18.01 5.32 -59.91 -0.32 -18.33 16 15 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 16 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 17 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 18 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 19 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 C -0.10 -1.29 2.72 -90.52 -0.25 -1.54 16 24 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 25 C -0.14 -1.95 8.38 37.16 0.31 -1.64 16 26 C 0.12 1.50 5.82 -3.74 -0.02 1.48 16 27 N -0.31 -4.01 12.80 32.42 0.41 -3.60 16 28 N -0.48 -4.52 7.45 32.62 0.24 -4.27 16 29 H 0.44 2.30 8.96 -182.33 -1.63 0.66 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.12 1.20 7.70 -51.93 -0.40 0.80 16 34 H 0.12 1.05 7.93 -51.93 -0.41 0.63 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.73 5.93 -51.93 -0.31 0.42 16 37 H 0.07 1.01 6.33 -51.92 -0.33 0.68 16 38 H 0.09 1.42 7.15 -51.93 -0.37 1.05 16 39 H 0.02 0.43 6.74 -51.93 -0.35 0.08 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.38 9.76 6.84 -40.82 -0.28 9.48 16 42 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.87 6.59 -51.93 -0.34 0.52 16 45 H 0.06 0.80 5.97 -51.93 -0.31 0.49 16 46 H 0.09 1.22 7.01 -51.93 -0.36 0.85 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 373.70 15.07 5.63 5.63 Total: -1.00 -36.75 373.70 -9.92 -46.67 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -8.45 Total: 5.97 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -2.72 Total: 2.15 kcal Atomic # 7 Polarization: -68.93 SS G_CDS: 0.56 Total: -68.37 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.75 -9.92 -46.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184368825.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.601 kcal (2) G-P(sol) polarization free energy of solvation -36.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds