Wall clock time and date at job start Sat Apr 11 2020 00:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00160 * 2 1 4 4 H 1.48495 * 109.47003 * 240.00285 * 3 2 1 5 5 H 1.48508 * 109.46880 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47042 * 119.99860 * 3 2 1 7 7 C 1.38806 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00075 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.46510 * 119.99911 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46680 * 34.99920 * 10 9 7 12 12 C 1.52997 * 109.47071 * 274.99622 * 10 9 7 13 13 C 1.52999 * 109.46991 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46626 * 60.00378 * 13 12 10 15 15 C 1.52997 * 109.47127 * 299.99539 * 14 13 12 16 16 C 1.52996 * 109.46858 * 154.99804 * 10 9 7 17 17 H 1.08996 * 109.47452 * 59.99781 * 16 10 9 18 18 N 1.46507 * 109.47258 * 299.99700 * 16 10 9 19 19 C 1.34777 * 119.99971 * 154.99970 * 18 16 10 20 20 O 1.21284 * 119.99852 * 0.02562 * 19 18 16 21 21 C 1.50703 * 119.99960 * 180.02562 * 19 18 16 22 22 C 1.52993 * 109.46859 * 180.02562 * 21 19 18 23 23 C 1.53001 * 109.47107 * 179.97438 * 22 21 19 24 24 N 1.46498 * 109.47450 * 179.97438 * 23 22 21 25 25 C 1.34426 * 126.82029 * 124.71436 * 24 23 22 26 26 N 1.30836 * 108.07546 * 179.89921 * 25 24 23 27 27 C 1.33236 * 109.82917 * 0.37535 * 26 25 24 28 28 N 1.30718 * 108.94807 * 359.76672 * 27 26 25 29 29 H 0.97010 * 119.99788 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00321 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47153 * 60.00215 * 12 10 9 32 32 H 1.08993 * 109.47194 * 300.00503 * 12 10 9 33 33 H 1.08993 * 109.47839 * 300.00447 * 13 12 10 34 34 H 1.09000 * 109.47160 * 180.02562 * 13 12 10 35 35 H 1.09001 * 109.46801 * 59.99811 * 14 13 12 36 36 H 1.09001 * 109.46998 * 179.97438 * 14 13 12 37 37 H 1.09002 * 109.47153 * 180.02562 * 15 14 13 38 38 H 1.08996 * 109.46952 * 300.00302 * 15 14 13 39 39 H 0.96998 * 120.00008 * 335.00854 * 18 16 10 40 40 H 1.09002 * 109.46880 * 300.00159 * 21 19 18 41 41 H 1.08994 * 109.46960 * 59.99910 * 21 19 18 42 42 H 1.09002 * 109.47333 * 299.99672 * 22 21 19 43 43 H 1.09002 * 109.47232 * 60.00141 * 22 21 19 44 44 H 1.08995 * 109.47404 * 300.00315 * 23 22 21 45 45 H 1.09002 * 109.46692 * 60.00138 * 23 22 21 46 46 H 1.08001 * 125.96490 * 0.03594 * 25 24 23 47 47 H 1.08008 * 125.53097 * 179.73384 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9687 -3.5505 0.5900 12 6 2.4218 -4.0357 -1.4365 13 6 3.1874 -5.3603 -1.4364 14 6 2.3105 -6.4559 -0.8265 15 6 1.9468 -6.0771 0.6105 16 6 1.1808 -4.7521 0.6102 17 1 0.2701 -4.8583 0.0209 18 7 0.8325 -4.3893 1.9863 19 6 -0.2856 -4.8861 2.5517 20 8 -1.0030 -5.6339 1.9214 21 6 -0.6442 -4.5126 3.9669 22 6 -1.9487 -5.2071 4.3626 23 6 -2.3125 -4.8283 5.7997 24 7 -3.5620 -5.4928 6.1785 25 6 -3.7590 -6.2930 7.2406 26 7 -5.0077 -6.6834 7.2286 27 6 -5.6341 -6.1621 6.1745 28 7 -4.7902 -5.4254 5.5008 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 3.0468 -3.2553 -1.8708 32 1 1.5111 -4.1418 -2.0258 33 1 4.0980 -5.2538 -0.8471 34 1 3.4469 -5.6300 -2.4601 35 1 1.3998 -6.5625 -1.4159 36 1 2.8557 -7.3998 -0.8268 37 1 1.3225 -6.8578 1.0451 38 1 2.8575 -5.9705 1.1997 39 1 1.4064 -3.7915 2.4903 40 1 0.1536 -4.8282 4.6392 41 1 -0.7717 -3.4323 4.0363 42 1 -2.7467 -4.8918 3.6904 43 1 -1.8208 -6.2873 4.2933 44 1 -1.5145 -5.1439 6.4718 45 1 -2.4403 -3.7481 5.8694 46 1 -3.0168 -6.5643 7.9767 47 1 -6.6709 -6.3226 5.9179 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229516287.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:37:50 Heat of formation + Delta-G solvation = 41.806014 kcal Electronic energy + Delta-G solvation = -26921.262786 eV Core-core repulsion = 23140.285362 eV Total energy + Delta-G solvation = -3780.977425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.19985 -39.80258 -37.97932 -35.67087 -34.07758 -33.73205 -32.29731 -31.36067 -31.18090 -29.48032 -27.99623 -26.95235 -23.79115 -23.47569 -22.17989 -21.99557 -21.21142 -21.04152 -20.06531 -19.41196 -17.70339 -17.19766 -16.54663 -16.26915 -15.95892 -15.47958 -15.14513 -14.86051 -14.45642 -14.19724 -14.06240 -13.82069 -13.67586 -13.39287 -13.10721 -12.93426 -12.70601 -12.53697 -12.16850 -12.05982 -11.88379 -11.75726 -11.11859 -11.00363 -10.95286 -10.86613 -10.78093 -10.58850 -10.36442 -10.23181 -10.19322 -9.97058 -9.87365 -9.80005 -9.67921 -9.49504 -8.95648 -8.59597 -7.03353 -5.82352 -3.12377 1.46753 2.11383 2.80023 2.94302 3.37537 3.43010 3.44284 3.48765 4.11661 4.20025 4.51180 4.59722 4.64460 4.82662 4.95038 5.02695 5.04521 5.10306 5.19217 5.24316 5.34419 5.47588 5.48920 5.54696 5.68711 5.79367 5.86064 5.86505 5.93032 5.94981 6.06486 6.08954 6.12563 6.26110 6.28965 6.42795 6.45273 6.48686 6.55582 6.60695 6.83327 6.88113 7.06020 7.62329 7.89537 7.90048 8.34711 8.57027 9.46396 10.02809 10.38139 11.39354 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.011067 B = 0.002947 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.537349 B = 9499.516425 C =11501.730182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.721 5.721 10 C 0.173 3.827 11 H 0.050 0.950 12 C -0.134 4.134 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.123 4.123 16 C 0.141 3.859 17 H 0.083 0.917 18 N -0.707 5.707 19 C 0.514 3.486 20 O -0.550 6.550 21 C -0.139 4.139 22 C -0.113 4.113 23 C 0.127 3.873 24 N -0.375 5.375 25 C 0.249 3.751 26 N -0.552 5.552 27 C 0.192 3.808 28 N -0.310 5.310 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.403 0.597 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.218 0.782 47 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.822 -13.155 11.853 17.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.362 5.362 10 C 0.063 3.937 11 H 0.068 0.932 12 C -0.175 4.175 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.162 4.162 16 C 0.035 3.965 17 H 0.101 0.899 18 N -0.356 5.356 19 C 0.300 3.700 20 O -0.428 6.428 21 C -0.180 4.180 22 C -0.152 4.152 23 C 0.005 3.995 24 N -0.165 5.165 25 C -0.048 4.048 26 N -0.279 5.279 27 C -0.110 4.110 28 N -0.138 5.138 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.237 0.763 40 H 0.111 0.889 41 H 0.119 0.881 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.121 0.879 45 H 0.111 0.889 46 H 0.234 0.766 47 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 0.148 -13.278 10.985 17.233 hybrid contribution 0.717 1.364 0.230 1.558 sum 0.865 -11.914 11.214 16.384 Atomic orbital electron populations 1.69664 1.05068 1.25788 1.57169 1.24737 0.95447 0.97613 1.02880 0.86311 0.78527 0.83739 0.77807 1.21320 1.21751 1.21322 1.19149 0.90853 0.84017 1.43276 0.91288 1.42410 1.05796 0.99453 1.88560 1.20460 0.93890 0.85808 0.93578 0.93219 1.22223 0.99951 0.95525 0.99757 1.21579 0.98493 0.95688 0.99977 1.21474 0.99922 0.98007 0.95825 1.21867 0.99900 0.97290 0.97132 1.21294 0.98954 0.93914 0.82309 0.89894 1.45911 1.25252 1.49121 1.15365 1.20392 0.80696 0.80314 0.88568 1.90690 1.50724 1.36889 1.64544 1.21560 0.98353 1.03258 0.94845 1.21549 0.97846 1.01680 0.94098 1.21955 0.80866 0.98364 0.98317 1.50598 1.09746 1.36538 1.19657 1.26057 0.95579 0.91267 0.91862 1.70519 1.04886 1.28563 1.23938 1.26027 1.00928 0.94115 0.89974 1.78134 0.90714 1.24559 1.20369 0.93432 0.78142 0.91617 0.92470 0.92404 0.92688 0.91986 0.92421 0.92056 0.92106 0.76261 0.88938 0.88103 0.89389 0.90732 0.87936 0.88857 0.76616 0.76783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.15 13.06 55.49 0.72 -26.43 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.54 29.55 -169.99 -5.02 16.52 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.24 -6.28 9.93 -15.06 -0.15 -6.42 16 8 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 9 N -0.72 -16.81 4.95 -53.42 -0.26 -17.07 16 10 C 0.17 3.16 2.29 -67.93 -0.16 3.01 16 11 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 12 C -0.13 -2.28 5.50 -26.73 -0.15 -2.42 16 13 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 16 14 C -0.11 -1.46 5.92 -26.73 -0.16 -1.62 16 15 C -0.12 -1.69 5.50 -26.71 -0.15 -1.83 16 16 C 0.14 2.31 1.98 -67.90 -0.13 2.17 16 17 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 18 N -0.71 -10.71 4.91 -53.78 -0.26 -10.97 16 19 C 0.51 7.83 7.79 -10.98 -0.09 7.74 16 20 O -0.55 -10.45 15.65 5.55 0.09 -10.37 16 21 C -0.14 -1.45 5.70 -27.89 -0.16 -1.61 16 22 C -0.11 -1.22 4.71 -26.73 -0.13 -1.35 16 23 C 0.13 0.99 6.55 -4.04 -0.03 0.96 16 24 N -0.37 -3.86 3.69 -62.63 -0.23 -4.09 16 25 C 0.25 2.21 12.63 -90.65 -1.14 1.06 16 26 N -0.55 -6.26 11.19 -15.83 -0.18 -6.44 16 27 C 0.19 2.17 13.03 -91.81 -1.20 0.97 16 28 N -0.31 -4.03 12.57 29.29 0.37 -3.66 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.38 9.97 7.80 -40.82 -0.32 9.65 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.40 5.64 8.60 -40.82 -0.35 5.29 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.09 1.25 8.10 -51.93 -0.42 0.83 16 43 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 44 H 0.10 0.41 8.09 -51.93 -0.42 -0.01 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.22 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.22 1.68 8.06 -52.48 -0.42 1.25 16 LS Contribution 388.01 15.07 5.85 5.85 Total: -1.00 -34.43 388.01 -10.60 -45.03 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -7.79 Total: 13.10 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -3.88 Total: -1.47 kcal Atomic # 7 Polarization: -68.82 SS G_CDS: 0.16 Total: -68.66 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.43 -10.60 -45.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229516287.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.840 kcal (2) G-P(sol) polarization free energy of solvation -34.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds