Wall clock time and date at job start Sat Apr 11 2020 00:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00160 * 2 1 4 4 H 1.48495 * 109.47003 * 240.00285 * 3 2 1 5 5 H 1.48508 * 109.46880 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47042 * 119.99860 * 3 2 1 7 7 C 1.38806 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00075 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.46510 * 119.99911 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46680 * 34.99920 * 10 9 7 12 12 C 1.52997 * 109.47071 * 274.99622 * 10 9 7 13 13 C 1.52999 * 109.46991 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46626 * 60.00378 * 13 12 10 15 15 C 1.52997 * 109.47127 * 299.99539 * 14 13 12 16 16 C 1.52996 * 109.46858 * 154.99804 * 10 9 7 17 17 H 1.08996 * 109.47452 * 59.99781 * 16 10 9 18 18 N 1.46507 * 109.47258 * 299.99700 * 16 10 9 19 19 C 1.34777 * 119.99971 * 154.99970 * 18 16 10 20 20 O 1.21284 * 119.99852 * 0.02562 * 19 18 16 21 21 C 1.50703 * 119.99960 * 180.02562 * 19 18 16 22 22 C 1.52993 * 109.46859 * 180.02562 * 21 19 18 23 23 C 1.53001 * 109.47107 * 179.97438 * 22 21 19 24 24 N 1.46498 * 109.47450 * 179.97438 * 23 22 21 25 25 C 1.34426 * 126.82029 * 124.71436 * 24 23 22 26 26 N 1.30836 * 108.07546 * 179.89921 * 25 24 23 27 27 C 1.33236 * 109.82917 * 0.37535 * 26 25 24 28 28 N 1.30718 * 108.94807 * 359.76672 * 27 26 25 29 29 H 0.97010 * 119.99788 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00321 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47153 * 60.00215 * 12 10 9 32 32 H 1.08993 * 109.47194 * 300.00503 * 12 10 9 33 33 H 1.08993 * 109.47839 * 300.00447 * 13 12 10 34 34 H 1.09000 * 109.47160 * 180.02562 * 13 12 10 35 35 H 1.09001 * 109.46801 * 59.99811 * 14 13 12 36 36 H 1.09001 * 109.46998 * 179.97438 * 14 13 12 37 37 H 1.09002 * 109.47153 * 180.02562 * 15 14 13 38 38 H 1.08996 * 109.46952 * 300.00302 * 15 14 13 39 39 H 0.96998 * 120.00008 * 335.00854 * 18 16 10 40 40 H 1.09002 * 109.46880 * 300.00159 * 21 19 18 41 41 H 1.08994 * 109.46960 * 59.99910 * 21 19 18 42 42 H 1.09002 * 109.47333 * 299.99672 * 22 21 19 43 43 H 1.09002 * 109.47232 * 60.00141 * 22 21 19 44 44 H 1.08995 * 109.47404 * 300.00315 * 23 22 21 45 45 H 1.09002 * 109.46692 * 60.00138 * 23 22 21 46 46 H 1.08001 * 125.96490 * 0.03594 * 25 24 23 47 47 H 1.08008 * 125.53097 * 179.73384 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9687 -3.5505 0.5900 12 6 2.4218 -4.0357 -1.4365 13 6 3.1874 -5.3603 -1.4364 14 6 2.3105 -6.4559 -0.8265 15 6 1.9468 -6.0771 0.6105 16 6 1.1808 -4.7521 0.6102 17 1 0.2701 -4.8583 0.0209 18 7 0.8325 -4.3893 1.9863 19 6 -0.2856 -4.8861 2.5517 20 8 -1.0030 -5.6339 1.9214 21 6 -0.6442 -4.5126 3.9669 22 6 -1.9487 -5.2071 4.3626 23 6 -2.3125 -4.8283 5.7997 24 7 -3.5620 -5.4928 6.1785 25 6 -3.7590 -6.2930 7.2406 26 7 -5.0077 -6.6834 7.2286 27 6 -5.6341 -6.1621 6.1745 28 7 -4.7902 -5.4254 5.5008 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 3.0468 -3.2553 -1.8708 32 1 1.5111 -4.1418 -2.0258 33 1 4.0980 -5.2538 -0.8471 34 1 3.4469 -5.6300 -2.4601 35 1 1.3998 -6.5625 -1.4159 36 1 2.8557 -7.3998 -0.8268 37 1 1.3225 -6.8578 1.0451 38 1 2.8575 -5.9705 1.1997 39 1 1.4064 -3.7915 2.4903 40 1 0.1536 -4.8282 4.6392 41 1 -0.7717 -3.4323 4.0363 42 1 -2.7467 -4.8918 3.6904 43 1 -1.8208 -6.2873 4.2933 44 1 -1.5145 -5.1439 6.4718 45 1 -2.4403 -3.7481 5.8694 46 1 -3.0168 -6.5643 7.9767 47 1 -6.6709 -6.3226 5.9179 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229516287.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:37:49 Heat of formation + Delta-G solvation = 19.863293 kcal Electronic energy + Delta-G solvation = -26922.214294 eV Core-core repulsion = 23140.285362 eV Total energy + Delta-G solvation = -3781.928932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.94982 -41.07711 -39.28591 -36.48812 -35.81199 -35.05836 -33.18101 -32.97953 -32.15099 -30.70085 -29.47444 -27.91823 -25.63499 -24.44162 -23.16559 -22.86356 -22.49040 -21.99217 -21.31666 -20.66766 -19.16546 -18.48202 -17.63905 -17.34774 -17.04518 -16.64384 -16.40262 -15.89818 -15.61178 -15.53609 -15.21241 -14.94185 -14.89962 -14.63513 -14.53736 -14.14059 -13.76752 -13.70556 -13.44562 -13.25862 -12.92016 -12.78364 -12.74743 -12.56599 -12.26900 -12.16961 -12.06604 -12.00859 -11.84066 -11.64393 -11.44509 -11.12737 -11.00904 -10.96671 -10.79519 -10.72011 -10.57446 -9.89779 -8.99351 -7.90694 -5.19860 0.74133 1.46239 1.48808 1.51071 1.56987 1.74107 2.03062 2.34938 2.57430 3.42215 3.52137 3.54983 3.68451 3.74061 3.83934 3.89921 4.11078 4.13848 4.17178 4.25634 4.31539 4.33915 4.43227 4.46710 4.52581 4.57886 4.59678 4.69047 4.70530 4.94704 5.01176 5.01657 5.18323 5.22121 5.23790 5.29086 5.30828 5.31985 5.46528 5.49190 5.53297 5.58488 5.71361 5.98585 6.28556 6.68614 7.14362 7.35405 7.37104 8.09331 8.33667 9.31984 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.011067 B = 0.002947 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.537349 B = 9499.516425 C =11501.730182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.074 4.074 3 Si 0.968 3.032 4 H -0.283 1.283 5 H -0.303 1.303 6 H -0.273 1.273 7 C -0.231 4.231 8 H 0.080 0.920 9 N -0.731 5.731 10 C 0.173 3.827 11 H 0.062 0.938 12 C -0.130 4.130 13 C -0.109 4.109 14 C -0.112 4.112 15 C -0.112 4.112 16 C 0.148 3.852 17 H 0.044 0.956 18 N -0.705 5.705 19 C 0.504 3.496 20 O -0.596 6.596 21 C -0.127 4.127 22 C -0.103 4.103 23 C 0.129 3.871 24 N -0.383 5.383 25 C 0.261 3.739 26 N -0.582 5.582 27 C 0.187 3.813 28 N -0.361 5.361 29 H 0.247 0.753 30 H 0.367 0.633 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.411 0.589 40 H 0.140 0.860 41 H 0.107 0.893 42 H 0.041 0.959 43 H 0.062 0.938 44 H 0.155 0.845 45 H 0.096 0.904 46 H 0.267 0.733 47 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.882 -14.152 13.950 20.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.266 4.266 3 Si 0.798 3.202 4 H -0.210 1.210 5 H -0.230 1.230 6 H -0.199 1.199 7 C -0.362 4.362 8 H 0.098 0.902 9 N -0.370 5.370 10 C 0.064 3.936 11 H 0.080 0.920 12 C -0.171 4.171 13 C -0.147 4.147 14 C -0.150 4.150 15 C -0.151 4.151 16 C 0.042 3.958 17 H 0.063 0.937 18 N -0.354 5.354 19 C 0.293 3.707 20 O -0.477 6.477 21 C -0.167 4.167 22 C -0.142 4.142 23 C 0.008 3.992 24 N -0.173 5.173 25 C -0.035 4.035 26 N -0.310 5.310 27 C -0.115 4.115 28 N -0.190 5.190 29 H 0.056 0.944 30 H 0.198 0.802 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.246 0.754 40 H 0.158 0.842 41 H 0.125 0.875 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.173 0.827 45 H 0.115 0.885 46 H 0.282 0.718 47 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 3.283 -14.296 13.088 19.658 hybrid contribution -0.207 1.592 -0.459 1.670 sum 3.076 -12.704 12.630 18.176 Atomic orbital electron populations 1.69842 1.06692 1.25775 1.59787 1.25489 0.96123 1.00873 1.04148 0.85288 0.77101 0.79589 0.78201 1.20952 1.23014 1.19853 1.19539 0.91373 0.84826 1.40490 0.90240 1.42585 1.05102 1.00768 1.88564 1.20669 0.93968 0.84303 0.94659 0.92032 1.22110 0.99335 0.97518 0.98118 1.21508 0.98415 0.93264 1.01510 1.21487 0.99676 0.99114 0.94740 1.21789 1.00085 0.95013 0.98250 1.21102 0.97255 0.94880 0.82588 0.93723 1.45924 1.25575 1.49145 1.14802 1.21299 0.79811 0.79346 0.90279 1.90671 1.51930 1.39037 1.66093 1.21574 0.99471 1.03465 0.92221 1.21374 0.96568 1.00742 0.95524 1.22156 0.81308 0.98661 0.97071 1.50729 1.09522 1.37121 1.19964 1.27016 0.95666 0.89244 0.91559 1.70536 1.06320 1.29720 1.24401 1.26496 1.01778 0.93474 0.89774 1.78064 0.92353 1.26250 1.22304 0.94386 0.80153 0.93190 0.94507 0.90681 0.91065 0.93294 0.89456 0.92636 0.89922 0.75362 0.84207 0.87494 0.94020 0.91971 0.82743 0.88530 0.71784 0.74937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.31 13.06 21.65 0.28 -58.02 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 3 Si 0.97 44.46 29.55 68.60 2.03 46.49 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.23 -11.92 9.93 84.03 0.83 -11.09 16 8 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 9 N -0.73 -34.61 4.95 -322.93 -1.60 -36.21 16 10 C 0.17 6.24 2.29 44.99 0.10 6.34 16 11 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 12 C -0.13 -4.38 5.50 30.59 0.17 -4.21 16 13 C -0.11 -2.65 5.92 30.60 0.18 -2.47 16 14 C -0.11 -2.62 5.92 30.60 0.18 -2.44 16 15 C -0.11 -2.89 5.50 30.61 0.17 -2.72 16 16 C 0.15 4.85 1.98 45.00 0.09 4.94 16 17 H 0.04 1.82 7.58 -2.39 -0.02 1.80 16 18 N -0.71 -21.05 4.91 -442.44 -2.17 -23.23 16 19 C 0.50 15.42 7.79 87.66 0.68 16.11 16 20 O -0.60 -23.67 15.65 -3.04 -0.05 -23.71 16 21 C -0.13 -2.45 5.70 29.85 0.17 -2.28 16 22 C -0.10 -2.19 4.71 30.59 0.14 -2.05 16 23 C 0.13 1.71 6.55 86.38 0.57 2.27 16 24 N -0.38 -7.42 3.69 -352.07 -1.30 -8.72 16 25 C 0.26 4.01 12.63 180.36 2.28 6.29 16 26 N -0.58 -12.65 11.19 -203.99 -2.28 -14.93 16 27 C 0.19 4.29 13.03 180.76 2.36 6.64 16 28 N -0.36 -9.63 12.57 -61.24 -0.77 -10.40 16 29 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 30 H 0.37 19.82 7.80 -92.71 -0.72 19.09 16 31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.41 10.92 8.60 -92.71 -0.80 10.12 16 40 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.04 1.26 8.10 -2.39 -0.02 1.24 16 43 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 44 H 0.15 0.45 8.09 -2.39 -0.02 0.43 16 45 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.27 0.90 8.06 -2.91 -0.02 0.88 16 47 H 0.23 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -80.13 388.01 1.98 -78.15 By element: Atomic # 1 Polarization: 39.40 SS G_CDS: -0.55 Total: 38.85 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 8.39 Total: 11.72 kcal Atomic # 7 Polarization: -143.66 SS G_CDS: -7.84 Total: -151.50 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.05 Total: -23.71 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -80.13 1.98 -78.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229516287.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.017 kcal (2) G-P(sol) polarization free energy of solvation -80.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds