Wall clock time and date at job start Sat Apr 11 2020 00:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.47455 * 2 1 4 4 C 1.35898 * 117.00196 * 179.97438 * 3 2 1 5 5 C 1.38762 * 120.04246 * 180.02562 * 4 3 2 6 6 C 1.38133 * 119.99402 * 179.97438 * 5 4 3 7 7 C 1.38248 * 120.08121 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.96025 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.46855 * 104.99772 * 8 7 6 10 10 C 1.46904 * 110.99914 * 169.99960 * 9 8 7 11 11 C 1.50695 * 109.47130 * 183.99676 * 10 9 8 12 12 H 1.07999 * 120.00336 * 5.37095 * 11 10 9 13 13 C 1.37882 * 120.00214 * 185.36532 * 11 10 9 14 14 N 1.31516 * 119.99317 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00151 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47341 * 60.00215 * 15 13 11 17 17 H 1.48504 * 109.46842 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47154 * 299.99753 * 15 13 11 19 19 C 1.46892 * 111.00298 * 293.95884 * 9 8 7 20 20 C 1.54271 * 110.03401 * 268.01433 * 19 9 8 21 21 C 1.54966 * 104.16313 * 217.13999 * 20 19 9 22 22 C 1.54884 * 102.77660 * 37.88320 * 21 20 19 23 23 C 1.53879 * 110.03427 * 150.80115 * 19 9 8 24 24 C 1.38478 * 120.08449 * 0.02562 * 7 6 5 25 25 F 1.35100 * 119.99904 * 179.97438 * 24 7 6 26 26 C 1.38390 * 120.00373 * 359.70091 * 24 7 6 27 27 H 1.09001 * 109.47321 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46641 * 299.99874 * 1 2 3 29 29 H 1.09000 * 109.46764 * 59.99593 * 1 2 3 30 30 H 1.09003 * 109.46863 * 239.99620 * 2 1 3 31 31 H 1.09000 * 109.46764 * 120.00407 * 2 1 3 32 32 H 1.08003 * 120.00695 * 359.97438 * 5 4 3 33 33 H 1.08004 * 119.95630 * 180.02562 * 6 5 4 34 34 H 1.08993 * 109.47485 * 224.99910 * 8 7 6 35 35 H 1.09001 * 109.47361 * 345.00350 * 8 7 6 36 36 H 1.08998 * 109.47443 * 304.00162 * 10 9 8 37 37 H 1.09001 * 109.46681 * 63.99807 * 10 9 8 38 38 H 0.97007 * 119.99463 * 179.97438 * 14 13 11 39 39 H 1.08997 * 110.01989 * 29.40309 * 19 9 8 40 40 H 1.09008 * 110.48262 * 335.78273 * 20 19 9 41 41 H 1.09001 * 110.48633 * 98.42582 * 20 19 9 42 42 H 1.08997 * 110.71396 * 279.57224 * 21 20 19 43 43 H 1.09000 * 110.92152 * 156.29498 * 21 20 19 44 44 H 1.08997 * 110.48659 * 203.40436 * 22 21 20 45 45 H 1.09008 * 110.59810 * 80.82344 * 22 21 20 46 46 H 1.09003 * 110.02593 * 238.56948 * 23 19 9 47 47 H 1.09001 * 110.02938 * 359.94570 * 23 19 9 48 48 H 1.07996 * 120.03741 * 180.29185 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 0.0005 5 6 3.8851 2.8071 0.0011 6 6 5.2546 2.9869 0.0022 7 6 6.0974 1.8910 0.0033 8 6 7.5912 2.0903 0.0038 9 7 8.1232 1.8006 1.3421 10 6 9.5914 1.7523 1.3258 11 6 10.0961 1.3573 2.6897 12 1 9.3972 1.0775 3.4640 13 6 11.4504 1.3528 2.9490 14 7 12.3015 1.6929 2.0058 15 14 12.0761 0.8625 4.6393 16 1 11.6485 -0.5271 4.9416 17 1 13.5589 0.9402 4.6599 18 1 11.5184 1.7852 5.6605 19 6 7.6395 2.7798 2.3244 20 6 8.6382 3.9499 2.4400 21 6 8.6226 4.3143 3.9461 22 6 8.5084 2.9305 4.6322 23 6 7.5566 2.1321 3.7177 24 6 5.5707 0.6103 0.0027 25 9 6.3959 -0.4594 0.0032 26 6 4.1991 0.4261 0.0073 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.2279 3.6642 0.0007 33 1 5.6676 3.9849 0.0031 34 1 8.0478 1.4177 -0.7221 35 1 7.8202 3.1221 -0.2626 36 1 9.9227 1.0200 0.5896 37 1 9.9842 2.7346 1.0635 38 1 13.2542 1.6902 2.1883 39 1 6.6596 3.1534 2.0274 40 1 9.6353 3.6319 2.1350 41 1 8.3059 4.7960 1.8385 42 1 7.7591 4.9356 4.1835 43 1 9.5472 4.8138 4.2353 44 1 8.0818 3.0333 5.6299 45 1 9.4837 2.4462 4.6835 46 1 6.5365 2.1920 4.0971 47 1 7.8745 1.0908 3.6648 48 1 3.7878 -0.5725 0.0116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237628802.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:38:21 Heat of formation + Delta-G solvation = -43.541055 kcal Electronic energy + Delta-G solvation = -28305.573978 eV Core-core repulsion = 24468.682914 eV Total energy + Delta-G solvation = -3836.891064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.185 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.51551 -40.17086 -38.84186 -37.37820 -34.28636 -32.69657 -32.01713 -30.69916 -30.04017 -28.00126 -27.34362 -26.59840 -24.32444 -23.78272 -22.04559 -21.84840 -21.07282 -19.78656 -18.61426 -18.15660 -16.79952 -16.72121 -16.34603 -15.85882 -15.45846 -15.20454 -14.92225 -14.58730 -14.36940 -14.26915 -13.86134 -13.73393 -13.40086 -13.16456 -13.07026 -12.79415 -12.41828 -12.39708 -11.97341 -11.78173 -11.56587 -11.51096 -11.14339 -11.07125 -10.96220 -10.76216 -10.68512 -10.40150 -10.35303 -10.20773 -10.12747 -9.84846 -9.43162 -9.25539 -8.85306 -8.75507 -8.37989 -8.03742 -7.09706 -5.98174 -3.95460 1.24977 1.36499 2.99955 3.33752 3.38925 3.41307 3.64828 4.42836 4.45675 4.64430 4.64949 4.81747 4.93930 4.99381 5.03157 5.10982 5.20243 5.37176 5.37972 5.48741 5.49943 5.54442 5.61128 5.71892 5.80185 5.85624 6.08915 6.11777 6.18626 6.22186 6.29173 6.32635 6.41328 6.47365 6.55815 6.59818 6.72539 6.75455 6.78584 6.84541 7.06614 7.08634 7.29414 7.32230 7.47722 7.61170 7.94671 8.15666 8.26624 8.61790 9.11304 9.66152 11.13273 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019244 B = 0.003438 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.622301 B = 8141.170296 C = 8423.056146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.314 6.314 4 C 0.149 3.851 5 C -0.166 4.166 6 C -0.050 4.050 7 C -0.134 4.134 8 C 0.094 3.906 9 N -0.526 5.526 10 C 0.186 3.814 11 C -0.505 4.505 12 H 0.084 0.916 13 C 0.056 3.944 14 N -0.901 5.901 15 Si 0.883 3.117 16 H -0.277 1.277 17 H -0.290 1.290 18 H -0.274 1.274 19 C 0.097 3.903 20 C -0.166 4.166 21 C -0.110 4.110 22 C -0.125 4.125 23 C -0.105 4.105 24 C 0.166 3.834 25 F -0.123 7.123 26 C -0.252 4.252 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.077 0.923 35 H 0.036 0.964 36 H 0.024 0.976 37 H 0.008 0.992 38 H 0.259 0.741 39 H 0.056 0.944 40 H 0.118 0.882 41 H 0.036 0.964 42 H 0.045 0.955 43 H 0.053 0.947 44 H 0.040 0.960 45 H 0.088 0.912 46 H 0.037 0.963 47 H 0.086 0.914 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.134 1.016 -3.964 19.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.228 6.228 4 C 0.103 3.897 5 C -0.185 4.185 6 C -0.069 4.069 7 C -0.136 4.136 8 C -0.034 4.034 9 N -0.249 5.249 10 C 0.062 3.938 11 C -0.544 4.544 12 H 0.101 0.899 13 C -0.144 4.144 14 N -0.541 5.541 15 Si 0.711 3.289 16 H -0.202 1.202 17 H -0.216 1.216 18 H -0.199 1.199 19 C -0.012 4.012 20 C -0.204 4.204 21 C -0.148 4.148 22 C -0.163 4.163 23 C -0.142 4.142 24 C 0.146 3.854 25 F -0.102 7.102 26 C -0.272 4.272 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.042 0.958 37 H 0.026 0.974 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.136 0.864 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.107 0.893 46 H 0.055 0.945 47 H 0.105 0.895 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.225 0.643 -3.869 19.621 hybrid contribution 0.971 0.088 0.669 1.182 sum -18.254 0.731 -3.200 18.547 Atomic orbital electron populations 1.21772 0.92739 1.02838 1.03476 1.22804 0.95816 0.82038 1.01673 1.86063 1.18813 1.29277 1.88670 1.18586 0.81931 0.93414 0.95742 1.20360 0.95067 0.94685 1.08392 1.20766 0.91694 0.98478 0.95944 1.20001 0.97521 0.91355 1.04707 1.20873 0.88731 0.99535 0.94224 1.62471 1.13136 1.46909 1.02402 1.19911 0.79866 0.95917 0.98108 1.21589 0.91567 1.43722 0.97482 0.89860 1.24932 0.97006 0.95885 0.96615 1.69948 1.02258 1.49245 1.32622 0.86807 0.77649 0.79327 0.85080 1.20233 1.21584 1.19943 1.22046 0.95828 0.90329 0.92962 1.23317 1.04550 0.96823 0.95741 1.22235 0.99469 0.96834 0.96248 1.22526 1.01629 0.95876 0.96238 1.22206 0.96588 1.01648 0.93784 1.17157 0.86624 0.83527 0.98141 1.91546 1.71728 1.53863 1.93023 1.21097 0.92647 0.99464 1.13945 0.90389 0.91493 0.91562 0.91948 0.91834 0.84995 0.84722 0.90445 0.94550 0.95791 0.97415 0.93089 0.92592 0.86423 0.94496 0.93613 0.92772 0.94153 0.89329 0.94460 0.89533 0.84698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.58 16 2 C 0.05 0.45 5.46 37.16 0.20 0.65 16 3 O -0.31 -3.68 10.14 -19.42 -0.20 -3.87 16 4 C 0.15 1.93 6.69 -39.23 -0.26 1.66 16 5 C -0.17 -2.07 9.99 -39.43 -0.39 -2.47 16 6 C -0.05 -0.67 8.41 -39.62 -0.33 -1.00 16 7 C -0.13 -2.12 4.60 -104.53 -0.48 -2.60 16 8 C 0.09 1.70 4.75 -4.97 -0.02 1.68 16 9 N -0.53 -10.98 4.37 -228.18 -1.00 -11.98 16 10 C 0.19 4.61 4.20 -4.98 -0.02 4.58 16 11 C -0.51 -13.17 5.83 -34.44 -0.20 -13.37 16 12 H 0.08 2.13 3.28 -52.49 -0.17 1.96 16 13 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 14 N -0.90 -25.91 13.29 55.43 0.74 -25.17 16 15 Si 0.88 21.13 28.49 -169.99 -4.84 16.28 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.34 7.02 56.52 0.40 -5.95 16 19 C 0.10 1.88 2.71 -66.59 -0.18 1.69 16 20 C -0.17 -3.26 5.73 -25.03 -0.14 -3.40 16 21 C -0.11 -2.01 6.91 -24.70 -0.17 -2.18 16 22 C -0.13 -2.42 6.18 -25.08 -0.16 -2.58 16 23 C -0.10 -2.04 5.64 -25.61 -0.14 -2.18 16 24 C 0.17 2.66 7.24 -39.44 -0.29 2.37 16 25 F -0.12 -2.23 16.75 2.25 0.04 -2.19 16 26 C -0.25 -3.43 9.02 -39.37 -0.35 -3.78 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.49 7.68 -51.93 -0.40 0.09 16 31 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 32 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 33 H 0.13 1.57 8.00 -52.48 -0.42 1.15 16 34 H 0.08 1.44 7.95 -51.93 -0.41 1.02 16 35 H 0.04 0.62 7.93 -51.93 -0.41 0.21 16 36 H 0.02 0.65 8.05 -51.93 -0.42 0.23 16 37 H 0.01 0.22 5.78 -51.93 -0.30 -0.08 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.06 1.00 5.86 -51.93 -0.30 0.70 16 40 H 0.12 2.75 4.11 -51.92 -0.21 2.54 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 1.96 4.80 -51.92 -0.25 1.71 16 46 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.09 1.89 5.85 -51.93 -0.30 1.58 16 48 H 0.14 1.57 6.30 -52.49 -0.33 1.24 16 LS Contribution 368.10 15.07 5.55 5.55 Total: -1.00 -28.72 368.10 -9.65 -38.38 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.28 Total: 3.09 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -2.66 Total: -20.08 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: -0.26 Total: -37.15 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.20 Total: -3.87 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.84 Total: 16.28 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.72 -9.65 -38.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237628802.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.165 kcal (2) G-P(sol) polarization free energy of solvation -28.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds