Wall clock time and date at job start Sat Apr 11 2020 00:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.47455 * 2 1 4 4 C 1.35898 * 117.00196 * 179.97438 * 3 2 1 5 5 C 1.38762 * 120.04246 * 180.02562 * 4 3 2 6 6 C 1.38133 * 119.99402 * 179.97438 * 5 4 3 7 7 C 1.38248 * 120.08121 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.96025 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.46855 * 104.99772 * 8 7 6 10 10 C 1.46904 * 110.99914 * 169.99960 * 9 8 7 11 11 C 1.50695 * 109.47130 * 183.99676 * 10 9 8 12 12 H 1.07999 * 120.00336 * 5.37095 * 11 10 9 13 13 C 1.37882 * 120.00214 * 185.36532 * 11 10 9 14 14 N 1.31516 * 119.99317 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00151 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47341 * 60.00215 * 15 13 11 17 17 H 1.48504 * 109.46842 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47154 * 299.99753 * 15 13 11 19 19 C 1.46892 * 111.00298 * 293.95884 * 9 8 7 20 20 C 1.54271 * 110.03401 * 268.01433 * 19 9 8 21 21 C 1.54966 * 104.16313 * 217.13999 * 20 19 9 22 22 C 1.54884 * 102.77660 * 37.88320 * 21 20 19 23 23 C 1.53879 * 110.03427 * 150.80115 * 19 9 8 24 24 C 1.38478 * 120.08449 * 0.02562 * 7 6 5 25 25 F 1.35100 * 119.99904 * 179.97438 * 24 7 6 26 26 C 1.38390 * 120.00373 * 359.70091 * 24 7 6 27 27 H 1.09001 * 109.47321 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46641 * 299.99874 * 1 2 3 29 29 H 1.09000 * 109.46764 * 59.99593 * 1 2 3 30 30 H 1.09003 * 109.46863 * 239.99620 * 2 1 3 31 31 H 1.09000 * 109.46764 * 120.00407 * 2 1 3 32 32 H 1.08003 * 120.00695 * 359.97438 * 5 4 3 33 33 H 1.08004 * 119.95630 * 180.02562 * 6 5 4 34 34 H 1.08993 * 109.47485 * 224.99910 * 8 7 6 35 35 H 1.09001 * 109.47361 * 345.00350 * 8 7 6 36 36 H 1.08998 * 109.47443 * 304.00162 * 10 9 8 37 37 H 1.09001 * 109.46681 * 63.99807 * 10 9 8 38 38 H 0.97007 * 119.99463 * 179.97438 * 14 13 11 39 39 H 1.08997 * 110.01989 * 29.40309 * 19 9 8 40 40 H 1.09008 * 110.48262 * 335.78273 * 20 19 9 41 41 H 1.09001 * 110.48633 * 98.42582 * 20 19 9 42 42 H 1.08997 * 110.71396 * 279.57224 * 21 20 19 43 43 H 1.09000 * 110.92152 * 156.29498 * 21 20 19 44 44 H 1.08997 * 110.48659 * 203.40436 * 22 21 20 45 45 H 1.09008 * 110.59810 * 80.82344 * 22 21 20 46 46 H 1.09003 * 110.02593 * 238.56948 * 23 19 9 47 47 H 1.09001 * 110.02938 * 359.94570 * 23 19 9 48 48 H 1.07996 * 120.03741 * 180.29185 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 0.0005 5 6 3.8851 2.8071 0.0011 6 6 5.2546 2.9869 0.0022 7 6 6.0974 1.8910 0.0033 8 6 7.5912 2.0903 0.0038 9 7 8.1232 1.8006 1.3421 10 6 9.5914 1.7523 1.3258 11 6 10.0961 1.3573 2.6897 12 1 9.3972 1.0775 3.4640 13 6 11.4504 1.3528 2.9490 14 7 12.3015 1.6929 2.0058 15 14 12.0761 0.8625 4.6393 16 1 11.6485 -0.5271 4.9416 17 1 13.5589 0.9402 4.6599 18 1 11.5184 1.7852 5.6605 19 6 7.6395 2.7798 2.3244 20 6 8.6382 3.9499 2.4400 21 6 8.6226 4.3143 3.9461 22 6 8.5084 2.9305 4.6322 23 6 7.5566 2.1321 3.7177 24 6 5.5707 0.6103 0.0027 25 9 6.3959 -0.4594 0.0032 26 6 4.1991 0.4261 0.0073 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.2279 3.6642 0.0007 33 1 5.6676 3.9849 0.0031 34 1 8.0478 1.4177 -0.7221 35 1 7.8202 3.1221 -0.2626 36 1 9.9227 1.0200 0.5896 37 1 9.9842 2.7346 1.0635 38 1 13.2542 1.6902 2.1883 39 1 6.6596 3.1534 2.0274 40 1 9.6353 3.6319 2.1350 41 1 8.3059 4.7960 1.8385 42 1 7.7591 4.9356 4.1835 43 1 9.5472 4.8138 4.2353 44 1 8.0818 3.0333 5.6299 45 1 9.4837 2.4462 4.6835 46 1 6.5365 2.1920 4.0971 47 1 7.8745 1.0908 3.6648 48 1 3.7878 -0.5725 0.0116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237628802.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:38:20 Heat of formation + Delta-G solvation = -58.781524 kcal Electronic energy + Delta-G solvation = -28306.234854 eV Core-core repulsion = 24468.682914 eV Total energy + Delta-G solvation = -3837.551940 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.185 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.81063 -41.18890 -40.32911 -38.47101 -35.79626 -34.64208 -32.86590 -31.83470 -31.18915 -29.55667 -29.17660 -28.03449 -25.58919 -24.93648 -23.66331 -22.95097 -22.24896 -21.30568 -19.89495 -19.47005 -18.70864 -17.81039 -17.20047 -16.97548 -16.88388 -16.77334 -16.39390 -16.15939 -15.95574 -15.28388 -15.24490 -14.91600 -14.78668 -14.49578 -14.17172 -14.09743 -13.78432 -13.40265 -13.29702 -13.16544 -12.94359 -12.80460 -12.60977 -12.54866 -12.27898 -12.14814 -12.04622 -11.95256 -11.74090 -11.66981 -11.61814 -11.49885 -11.09828 -10.97141 -10.65923 -10.48528 -9.88624 -9.14079 -8.79037 -8.08639 -6.10727 0.18530 0.26043 1.41506 1.42826 1.48955 2.17404 2.44433 2.57166 3.26237 3.32420 3.42864 3.72406 3.81025 3.96991 3.99444 4.01975 4.06188 4.14872 4.23500 4.32625 4.38426 4.49832 4.54720 4.64271 4.72936 4.80526 4.87881 4.88685 4.95621 4.96476 5.02252 5.07147 5.10811 5.14516 5.18500 5.20911 5.26214 5.28426 5.31094 5.39012 5.45414 5.59084 5.71807 5.74831 5.85904 5.92429 6.21765 6.35916 6.48821 6.78609 7.04737 7.55101 9.03199 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019244 B = 0.003438 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.622301 B = 8141.170296 C = 8423.056146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.041 3.959 3 O -0.319 6.319 4 C 0.153 3.847 5 C -0.158 4.158 6 C -0.044 4.044 7 C -0.150 4.150 8 C 0.098 3.902 9 N -0.534 5.534 10 C 0.203 3.797 11 C -0.499 4.499 12 H 0.090 0.910 13 C 0.007 3.993 14 N -0.939 5.939 15 Si 0.938 3.062 16 H -0.275 1.275 17 H -0.293 1.293 18 H -0.259 1.259 19 C 0.099 3.901 20 C -0.165 4.165 21 C -0.104 4.104 22 C -0.127 4.127 23 C -0.103 4.103 24 C 0.139 3.861 25 F -0.145 7.145 26 C -0.250 4.250 27 H 0.098 0.902 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.159 0.841 33 H 0.155 0.845 34 H 0.057 0.943 35 H 0.045 0.955 36 H -0.015 1.015 37 H -0.009 1.009 38 H 0.257 0.743 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.446 2.171 -2.772 22.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.034 4.034 3 O -0.233 6.233 4 C 0.107 3.893 5 C -0.177 4.177 6 C -0.063 4.063 7 C -0.152 4.152 8 C -0.030 4.030 9 N -0.257 5.257 10 C 0.077 3.923 11 C -0.537 4.537 12 H 0.108 0.892 13 C -0.190 4.190 14 N -0.581 5.581 15 Si 0.765 3.235 16 H -0.200 1.200 17 H -0.219 1.219 18 H -0.184 1.184 19 C -0.009 4.009 20 C -0.203 4.203 21 C -0.142 4.142 22 C -0.164 4.164 23 C -0.141 4.141 24 C 0.119 3.881 25 F -0.124 7.124 26 C -0.269 4.269 27 H 0.116 0.884 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.177 0.823 33 H 0.173 0.827 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.003 0.997 37 H 0.008 0.992 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.067 0.933 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -22.573 1.795 -2.670 22.801 hybrid contribution 1.834 -0.288 0.230 1.871 sum -20.738 1.507 -2.440 20.936 Atomic orbital electron populations 1.21797 0.90957 1.04194 1.03465 1.23114 0.97264 0.80767 1.02231 1.86082 1.17783 1.31179 1.88216 1.18739 0.82551 0.93407 0.94643 1.20664 0.94910 0.95426 1.06663 1.20943 0.91882 0.98457 0.94989 1.19835 0.96023 0.92287 1.07034 1.20796 0.90542 0.99408 0.92225 1.62345 1.10467 1.48347 1.04545 1.19552 0.82577 0.93691 0.96433 1.21889 0.91691 1.42162 0.97979 0.89242 1.25653 0.97413 0.96195 0.99758 1.70088 1.02284 1.51130 1.34581 0.85913 0.76789 0.79198 0.81626 1.20014 1.21883 1.18370 1.22129 0.96597 0.89758 0.92458 1.23187 1.02206 0.97594 0.97332 1.22232 1.00673 0.96600 0.94682 1.22481 0.99987 0.96165 0.97786 1.22172 0.97951 0.99826 0.94125 1.17476 0.87483 0.83156 0.99979 1.91488 1.72545 1.54868 1.93489 1.21215 0.91583 1.00766 1.13337 0.88384 0.91608 0.91444 0.91197 0.91499 0.82325 0.82699 0.92423 0.93671 0.99663 0.99170 0.93412 0.90272 0.90718 0.92477 0.90344 0.93299 0.91565 0.92625 0.91925 0.92455 0.83205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.28 71.98 0.74 -0.73 16 2 C 0.04 0.60 5.46 71.98 0.39 0.99 16 3 O -0.32 -6.51 10.14 -92.40 -0.94 -7.44 16 4 C 0.15 3.54 6.69 22.50 0.15 3.69 16 5 C -0.16 -3.39 9.99 22.37 0.22 -3.17 16 6 C -0.04 -1.06 8.41 22.25 0.19 -0.88 16 7 C -0.15 -4.64 4.60 -19.80 -0.09 -4.73 16 8 C 0.10 3.61 4.75 85.56 0.41 4.02 16 9 N -0.53 -22.82 4.37 -875.83 -3.82 -26.64 16 10 C 0.20 10.57 4.20 85.55 0.36 10.93 16 11 C -0.50 -26.90 5.83 25.60 0.15 -26.75 16 12 H 0.09 4.68 3.28 -2.91 -0.01 4.67 16 13 C 0.01 0.37 5.46 84.66 0.46 0.83 16 14 N -0.94 -56.29 13.29 21.45 0.28 -56.01 16 15 Si 0.94 44.21 28.49 68.60 1.95 46.16 16 16 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 18 H -0.26 -11.49 7.02 99.48 0.70 -10.79 16 19 C 0.10 3.70 2.71 45.64 0.12 3.82 16 20 C -0.16 -6.31 5.73 31.70 0.18 -6.12 16 21 C -0.10 -3.56 6.91 31.91 0.22 -3.34 16 22 C -0.13 -4.66 6.18 31.67 0.20 -4.47 16 23 C -0.10 -3.85 5.64 31.32 0.18 -3.68 16 24 C 0.14 4.43 7.24 22.36 0.16 4.59 16 25 F -0.15 -5.45 16.75 44.97 0.75 -4.70 16 26 C -0.25 -6.42 9.02 22.41 0.20 -6.21 16 27 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.93 7.68 -2.39 -0.02 0.91 16 31 H 0.07 0.95 7.65 -2.39 -0.02 0.93 16 32 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.16 3.05 8.00 -2.91 -0.02 3.03 16 34 H 0.06 2.29 7.95 -2.39 -0.02 2.27 16 35 H 0.05 1.55 7.93 -2.39 -0.02 1.54 16 36 H -0.01 -0.86 8.05 -2.39 -0.02 -0.88 16 37 H -0.01 -0.50 5.78 -2.39 -0.01 -0.51 16 38 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 39 H 0.08 2.61 5.86 -2.39 -0.01 2.59 16 40 H 0.07 3.58 4.11 -2.38 -0.01 3.57 16 41 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.06 2.42 4.80 -2.38 -0.01 2.41 16 46 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.06 2.49 5.85 -2.39 -0.01 2.48 16 48 H 0.15 3.26 6.30 -2.91 -0.02 3.24 16 Total: -1.00 -64.69 368.10 3.43 -61.26 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.95 Total: 18.57 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: 4.24 Total: -31.20 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -3.54 Total: -82.65 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.94 Total: -7.44 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.75 Total: -4.70 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.95 Total: 46.16 kcal Total: -64.69 3.43 -61.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237628802.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.479 kcal (2) G-P(sol) polarization free energy of solvation -64.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds