Wall clock time and date at job start Sat Apr 11 2020 00:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 C 1.53000 * 109.47128 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47270 * 179.97438 * 4 3 2 6 6 C 1.36942 * 119.99831 * 269.99790 * 5 4 3 7 7 H 1.07994 * 120.00273 * 15.37432 * 6 5 4 8 8 C 1.38815 * 119.99656 * 195.38016 * 6 5 4 9 9 N 1.31618 * 120.00270 * 20.30672 * 8 6 5 10 10 Si 1.86799 * 119.99649 * 200.31245 * 8 6 5 11 11 H 1.48501 * 109.47528 * 64.99883 * 10 8 6 12 12 H 1.48506 * 109.47131 * 184.99819 * 10 8 6 13 13 H 1.48498 * 109.47133 * 304.99565 * 10 8 6 14 14 C 1.46500 * 120.00203 * 89.99846 * 5 4 3 15 15 C 1.50696 * 109.47259 * 82.17684 * 14 5 4 16 16 C 1.38177 * 120.03099 * 10.55014 * 15 14 5 17 17 C 1.38239 * 120.05794 * 180.29632 * 16 15 14 18 18 C 1.38293 * 120.11086 * 359.67764 * 17 16 15 19 19 C 1.38124 * 120.05459 * 0.02562 * 18 17 16 20 20 C 1.38707 * 120.03074 * 190.22749 * 15 14 5 21 21 O 1.35905 * 120.05536 * 359.97438 * 20 15 14 22 22 Si 1.63092 * 114.00450 * 261.18530 * 21 20 15 23 23 C 1.86307 * 109.47070 * 65.60569 * 22 21 20 24 24 C 1.86297 * 109.47281 * 305.60801 * 22 21 20 25 25 C 1.86297 * 109.47455 * 185.60363 * 22 21 20 26 26 H 1.09002 * 109.47046 * 60.00455 * 1 2 3 27 27 H 1.08996 * 109.47077 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47204 * 300.00666 * 1 2 3 29 29 H 1.09001 * 109.47204 * 239.99334 * 2 1 3 30 30 H 1.09002 * 109.47046 * 119.99544 * 2 1 3 31 31 H 1.08991 * 109.47596 * 59.99697 * 3 2 1 32 32 H 1.09004 * 109.46549 * 299.99213 * 3 2 1 33 33 H 1.09001 * 109.47204 * 59.99334 * 4 3 2 34 34 H 1.09002 * 109.47046 * 299.99544 * 4 3 2 35 35 H 0.97000 * 119.99547 * 184.14950 * 9 8 6 36 36 H 1.09006 * 109.46911 * 322.17681 * 14 5 4 37 37 H 1.08998 * 109.47017 * 202.18094 * 14 5 4 38 38 H 1.08001 * 119.96402 * 0.02562 * 16 15 14 39 39 H 1.08001 * 119.94388 * 179.69792 * 17 16 15 40 40 H 1.07994 * 119.96839 * 180.02562 * 18 17 16 41 41 H 1.08000 * 120.02709 * 180.02562 * 19 18 17 42 42 H 1.09004 * 109.46901 * 294.35611 * 23 22 21 43 43 H 1.09003 * 109.46958 * 54.35119 * 23 22 21 44 44 H 1.08996 * 109.47113 * 174.35576 * 23 22 21 45 45 H 1.09001 * 109.47477 * 179.97438 * 24 22 21 46 46 H 1.08997 * 109.47427 * 300.00146 * 24 22 21 47 47 H 1.09004 * 109.47400 * 59.99836 * 24 22 21 48 48 H 1.08996 * 109.47336 * 304.98378 * 25 22 21 49 49 H 1.09007 * 109.46486 * 64.97578 * 25 22 21 50 50 H 1.08995 * 109.47256 * 184.97862 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8236 -0.0013 6 6 4.2861 3.4688 -1.1875 7 1 3.8817 3.0694 -2.1058 8 6 5.0370 4.6361 -1.2097 9 7 5.8509 4.9141 -0.2133 10 14 4.8924 5.8124 -2.6535 11 1 3.5204 6.3791 -2.6949 12 1 5.8778 6.9123 -2.4966 13 1 5.1641 5.0809 -3.9170 14 6 4.3030 3.5147 1.2671 15 6 5.6582 3.1246 1.7985 16 6 6.5363 2.4167 1.0003 17 6 7.7772 2.0532 1.4892 18 6 8.1456 2.4026 2.7756 19 6 7.2738 3.1155 3.5753 20 6 6.0277 3.4815 3.0869 21 8 5.1686 4.1839 3.8715 22 14 5.4668 5.7868 3.9123 23 6 5.1705 6.5168 2.2240 24 6 7.2380 6.0764 4.4119 25 6 4.3325 6.5983 5.1475 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9562 -0.8901 33 1 3.9330 0.9287 -0.8908 34 1 3.9337 0.9286 0.8892 35 1 6.3300 5.7574 -0.1994 36 1 3.5353 3.2334 1.9881 37 1 4.2725 4.5922 1.1056 38 1 6.2512 2.1434 -0.0049 39 1 8.4603 1.4957 0.8655 40 1 9.1158 2.1178 3.1551 41 1 7.5621 3.3885 4.5797 42 1 5.9008 6.1155 1.5214 43 1 4.1653 6.2610 1.8889 44 1 5.2720 7.6009 2.2740 45 1 7.4375 7.1477 4.4387 46 1 7.4115 5.6494 5.3996 47 1 7.9017 5.6017 3.6892 48 1 3.2980 6.3550 4.9053 49 1 4.5664 6.2354 6.1484 50 1 4.4697 7.6789 5.1114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237725969.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:38:24 Heat of formation + Delta-G solvation = -34.798405 kcal Electronic energy + Delta-G solvation = -26708.924923 eV Core-core repulsion = 23359.079721 eV Total energy + Delta-G solvation = -3349.845202 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.187 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -39.15216 -36.47923 -35.61484 -34.17926 -31.28312 -30.44344 -29.00828 -28.29316 -27.78374 -27.15517 -26.87754 -25.25633 -23.83945 -21.69986 -21.13971 -20.53782 -19.72327 -17.10193 -16.78367 -15.25827 -15.04218 -14.87179 -14.69744 -14.47607 -13.64454 -13.54365 -13.21215 -13.10635 -13.00270 -12.83772 -12.50254 -12.35146 -12.24143 -12.08841 -12.03263 -11.82748 -11.63598 -11.50728 -11.27362 -11.14100 -11.04859 -10.91181 -10.74346 -10.61900 -10.52905 -10.44751 -10.23202 -10.12732 -9.87854 -9.79719 -9.60895 -9.41313 -8.87073 -8.50664 -7.65747 -7.27774 -6.82476 -5.74785 -3.13017 2.16662 2.47143 2.97037 3.18010 3.39556 3.41714 3.46795 3.48778 4.03580 4.51264 4.88668 5.21529 5.37734 5.40275 5.58043 5.60869 5.70781 5.77215 5.80447 5.85606 5.91674 5.95668 5.99918 6.01909 6.14824 6.25580 6.31865 6.33960 6.37206 6.41950 6.45252 6.51363 6.58650 6.61803 6.62735 6.67491 6.75971 6.90765 6.94983 7.03213 7.13810 7.26653 7.34083 7.47519 7.58810 7.62980 7.85540 7.95072 8.18000 8.37447 9.22615 9.85839 10.32469 11.26588 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.009488 B = 0.005538 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.439398 B = 5054.709066 C = 5790.007630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.137 4.137 4 C 0.148 3.852 5 N -0.595 5.595 6 C -0.251 4.251 7 H 0.070 0.930 8 C 0.004 3.996 9 N -0.887 5.887 10 Si 0.892 3.108 11 H -0.289 1.289 12 H -0.293 1.293 13 H -0.286 1.286 14 C 0.194 3.806 15 C -0.045 4.045 16 C -0.035 4.035 17 C -0.155 4.155 18 C -0.130 4.130 19 C -0.175 4.175 20 C 0.101 3.899 21 O -0.567 6.567 22 Si 1.251 2.749 23 C -0.509 4.509 24 C -0.501 4.501 25 C -0.467 4.467 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.036 0.964 35 H 0.254 0.746 36 H 0.024 0.976 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.068 0.932 44 H 0.049 0.951 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.066 0.934 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.125 -2.248 7.536 7.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.178 4.178 4 C 0.022 3.978 5 N -0.316 5.316 6 C -0.380 4.380 7 H 0.088 0.912 8 C -0.194 4.194 9 N -0.533 5.533 10 Si 0.722 3.278 11 H -0.216 1.216 12 H -0.219 1.219 13 H -0.213 1.213 14 C 0.069 3.931 15 C -0.049 4.049 16 C -0.053 4.053 17 C -0.174 4.174 18 C -0.148 4.148 19 C -0.194 4.194 20 C 0.058 3.942 21 O -0.522 6.522 22 Si 1.389 2.611 23 C -0.612 4.612 24 C -0.603 4.603 25 C -0.572 4.572 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.131 0.869 38 H 0.151 0.849 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.129 0.871 42 H 0.135 0.865 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.091 0.909 49 H 0.085 0.915 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.129 -2.335 7.602 8.033 hybrid contribution 0.268 1.261 -0.763 1.498 sum -0.861 -1.075 6.839 6.976 Atomic orbital electron populations 1.21764 0.96772 1.00583 1.01541 1.21497 0.95030 0.98326 1.01221 1.22201 0.99446 0.94498 1.01612 1.20799 0.91428 0.86691 0.98925 1.44025 1.75830 1.09151 1.02562 1.19171 1.26251 1.06028 0.86547 0.91226 1.24677 0.96892 1.00205 0.97638 1.70167 1.27179 1.23427 1.32495 0.86531 0.77157 0.81393 0.82694 1.21603 1.21876 1.21270 1.19910 0.88580 1.00052 0.84588 1.20771 0.99693 0.94768 0.89624 1.20897 0.91297 0.93915 0.99240 1.21037 0.97654 1.02994 0.95666 1.20595 0.98524 1.00867 0.94818 1.20952 0.94238 1.04233 0.99992 1.17892 0.88403 0.98360 0.89574 1.83692 1.58560 1.43288 1.66626 0.77439 0.64361 0.52827 0.66493 1.27262 1.07444 1.05287 1.21222 1.27002 1.23709 1.04209 1.05397 1.26346 1.11571 1.07308 1.11964 0.93041 0.93587 0.93088 0.92575 0.92653 0.92959 0.92311 0.93726 0.94582 0.93456 0.95760 0.86865 0.84865 0.87853 0.87720 0.87131 0.86470 0.91313 0.93189 0.91634 0.91953 0.90491 0.90909 0.91484 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.12 -1.73 5.93 -26.73 -0.16 -1.89 16 3 C -0.14 -2.37 5.54 -26.73 -0.15 -2.52 16 4 C 0.15 2.90 5.25 -4.04 -0.02 2.87 16 5 N -0.60 -13.50 1.36 -174.61 -0.24 -13.74 16 6 C -0.25 -6.23 9.08 -15.06 -0.14 -6.37 16 7 H 0.07 1.74 7.91 -52.49 -0.42 1.33 16 8 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 9 N -0.89 -22.04 6.78 55.49 0.38 -21.67 16 10 Si 0.89 20.73 29.60 -169.99 -5.03 15.70 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 14 C 0.19 4.37 4.45 -5.20 -0.02 4.34 16 15 C -0.05 -0.98 4.59 -104.47 -0.48 -1.46 16 16 C -0.04 -0.76 7.97 -39.60 -0.32 -1.08 16 17 C -0.16 -2.98 10.04 -39.56 -0.40 -3.38 16 18 C -0.13 -2.30 10.04 -39.60 -0.40 -2.70 16 19 C -0.18 -3.18 7.95 -39.43 -0.31 -3.50 16 20 C 0.10 2.00 4.65 -39.22 -0.18 1.81 16 21 O -0.57 -10.33 8.00 -19.44 -0.16 -10.48 16 22 Si 1.25 19.00 12.71 -169.99 -2.16 16.84 16 23 C -0.51 -9.23 7.30 101.05 0.74 -8.49 16 24 C -0.50 -7.24 7.65 101.05 0.77 -6.46 16 25 C -0.47 -6.02 8.65 101.05 0.87 -5.15 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.04 0.87 8.04 -51.93 -0.42 0.45 16 34 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 35 H 0.25 6.36 7.09 -40.82 -0.29 6.07 16 36 H 0.02 0.54 8.11 -51.93 -0.42 0.12 16 37 H 0.11 2.71 3.14 -51.93 -0.16 2.54 16 38 H 0.13 3.16 6.33 -52.49 -0.33 2.83 16 39 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.11 1.77 7.58 -52.49 -0.40 1.37 16 42 H 0.12 2.46 4.57 -51.93 -0.24 2.22 16 43 H 0.07 1.33 6.58 -51.93 -0.34 0.99 16 44 H 0.05 0.80 7.96 -51.93 -0.41 0.39 16 45 H 0.06 0.85 7.96 -51.93 -0.41 0.44 16 46 H 0.06 0.82 7.96 -51.93 -0.41 0.40 16 47 H 0.08 1.23 6.91 -51.93 -0.36 0.87 16 48 H 0.07 0.94 7.96 -51.93 -0.41 0.53 16 49 H 0.07 0.79 7.96 -51.93 -0.41 0.38 16 50 H 0.07 0.83 7.96 -51.93 -0.41 0.42 16 LS Contribution 388.94 15.07 5.86 5.86 Total: -1.00 -25.66 388.94 -10.13 -35.79 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -8.88 Total: 7.13 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: 0.09 Total: -35.43 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.14 Total: -35.41 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -0.16 Total: -10.48 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: -7.19 Total: 32.54 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -25.66 -10.13 -35.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237725969.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.989 kcal (2) G-P(sol) polarization free energy of solvation -25.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds