Wall clock time and date at job start Sat Apr 11 2020 00:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 C 1.53000 * 109.47128 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47270 * 179.97438 * 4 3 2 6 6 C 1.36942 * 119.99831 * 269.99790 * 5 4 3 7 7 H 1.07994 * 120.00273 * 15.37432 * 6 5 4 8 8 C 1.38815 * 119.99656 * 195.38016 * 6 5 4 9 9 N 1.31618 * 120.00270 * 20.30672 * 8 6 5 10 10 Si 1.86799 * 119.99649 * 200.31245 * 8 6 5 11 11 H 1.48501 * 109.47528 * 64.99883 * 10 8 6 12 12 H 1.48506 * 109.47131 * 184.99819 * 10 8 6 13 13 H 1.48498 * 109.47133 * 304.99565 * 10 8 6 14 14 C 1.46500 * 120.00203 * 89.99846 * 5 4 3 15 15 C 1.50696 * 109.47259 * 82.17684 * 14 5 4 16 16 C 1.38177 * 120.03099 * 10.55014 * 15 14 5 17 17 C 1.38239 * 120.05794 * 180.29632 * 16 15 14 18 18 C 1.38293 * 120.11086 * 359.67764 * 17 16 15 19 19 C 1.38124 * 120.05459 * 0.02562 * 18 17 16 20 20 C 1.38707 * 120.03074 * 190.22749 * 15 14 5 21 21 O 1.35905 * 120.05536 * 359.97438 * 20 15 14 22 22 Si 1.63092 * 114.00450 * 261.18530 * 21 20 15 23 23 C 1.86307 * 109.47070 * 65.60569 * 22 21 20 24 24 C 1.86297 * 109.47281 * 305.60801 * 22 21 20 25 25 C 1.86297 * 109.47455 * 185.60363 * 22 21 20 26 26 H 1.09002 * 109.47046 * 60.00455 * 1 2 3 27 27 H 1.08996 * 109.47077 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47204 * 300.00666 * 1 2 3 29 29 H 1.09001 * 109.47204 * 239.99334 * 2 1 3 30 30 H 1.09002 * 109.47046 * 119.99544 * 2 1 3 31 31 H 1.08991 * 109.47596 * 59.99697 * 3 2 1 32 32 H 1.09004 * 109.46549 * 299.99213 * 3 2 1 33 33 H 1.09001 * 109.47204 * 59.99334 * 4 3 2 34 34 H 1.09002 * 109.47046 * 299.99544 * 4 3 2 35 35 H 0.97000 * 119.99547 * 184.14950 * 9 8 6 36 36 H 1.09006 * 109.46911 * 322.17681 * 14 5 4 37 37 H 1.08998 * 109.47017 * 202.18094 * 14 5 4 38 38 H 1.08001 * 119.96402 * 0.02562 * 16 15 14 39 39 H 1.08001 * 119.94388 * 179.69792 * 17 16 15 40 40 H 1.07994 * 119.96839 * 180.02562 * 18 17 16 41 41 H 1.08000 * 120.02709 * 180.02562 * 19 18 17 42 42 H 1.09004 * 109.46901 * 294.35611 * 23 22 21 43 43 H 1.09003 * 109.46958 * 54.35119 * 23 22 21 44 44 H 1.08996 * 109.47113 * 174.35576 * 23 22 21 45 45 H 1.09001 * 109.47477 * 179.97438 * 24 22 21 46 46 H 1.08997 * 109.47427 * 300.00146 * 24 22 21 47 47 H 1.09004 * 109.47400 * 59.99836 * 24 22 21 48 48 H 1.08996 * 109.47336 * 304.98378 * 25 22 21 49 49 H 1.09007 * 109.46486 * 64.97578 * 25 22 21 50 50 H 1.08995 * 109.47256 * 184.97862 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8236 -0.0013 6 6 4.2861 3.4688 -1.1875 7 1 3.8817 3.0694 -2.1058 8 6 5.0370 4.6361 -1.2097 9 7 5.8509 4.9141 -0.2133 10 14 4.8924 5.8124 -2.6535 11 1 3.5204 6.3791 -2.6949 12 1 5.8778 6.9123 -2.4966 13 1 5.1641 5.0809 -3.9170 14 6 4.3030 3.5147 1.2671 15 6 5.6582 3.1246 1.7985 16 6 6.5363 2.4167 1.0003 17 6 7.7772 2.0532 1.4892 18 6 8.1456 2.4026 2.7756 19 6 7.2738 3.1155 3.5753 20 6 6.0277 3.4815 3.0869 21 8 5.1686 4.1839 3.8715 22 14 5.4668 5.7868 3.9123 23 6 5.1705 6.5168 2.2240 24 6 7.2380 6.0764 4.4119 25 6 4.3325 6.5983 5.1475 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9562 -0.8901 33 1 3.9330 0.9287 -0.8908 34 1 3.9337 0.9286 0.8892 35 1 6.3300 5.7574 -0.1994 36 1 3.5353 3.2334 1.9881 37 1 4.2725 4.5922 1.1056 38 1 6.2512 2.1434 -0.0049 39 1 8.4603 1.4957 0.8655 40 1 9.1158 2.1178 3.1551 41 1 7.5621 3.3885 4.5797 42 1 5.9008 6.1155 1.5214 43 1 4.1653 6.2610 1.8889 44 1 5.2720 7.6009 2.2740 45 1 7.4375 7.1477 4.4387 46 1 7.4115 5.6494 5.3996 47 1 7.9017 5.6017 3.6892 48 1 3.2980 6.3550 4.9053 49 1 4.5664 6.2354 6.1484 50 1 4.4697 7.6789 5.1114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237725969.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:38:23 Heat of formation + Delta-G solvation = -40.977938 kcal Electronic energy + Delta-G solvation = -26709.192888 eV Core-core repulsion = 23359.079721 eV Total energy + Delta-G solvation = -3350.113166 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.187 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.66078 -38.09991 -37.06841 -35.61810 -33.08485 -31.96969 -30.48672 -29.45116 -29.26639 -28.35301 -28.19106 -26.97796 -25.41486 -23.18476 -22.66096 -21.91323 -21.37006 -18.65432 -18.50227 -16.94123 -16.59597 -16.35691 -16.15840 -15.99104 -15.44085 -14.83486 -14.79931 -14.56371 -14.25568 -14.03174 -13.84016 -13.69695 -13.50255 -13.48131 -13.15971 -13.14418 -13.04257 -12.97361 -12.80267 -12.74188 -12.69534 -12.35286 -12.30712 -12.18380 -11.96058 -11.88227 -11.85159 -11.77843 -11.47962 -11.32232 -11.19458 -10.63576 -10.38359 -10.23585 -9.20690 -8.84323 -8.62376 -7.67066 -5.05693 0.70488 0.95842 1.47517 1.52347 1.54951 1.65056 2.06516 2.18571 2.59139 2.77001 3.32727 3.42377 3.69544 4.17146 4.28495 4.35091 4.39567 4.46206 4.53869 4.59118 4.72166 4.82633 4.83126 4.85094 4.87561 4.90016 4.91846 4.95616 5.01609 5.05155 5.08139 5.08962 5.11112 5.19724 5.24887 5.41407 5.49065 5.51267 5.52018 5.62572 5.64346 5.71668 5.74941 5.78683 5.87994 6.04748 6.11382 6.33946 6.47774 6.65438 7.30269 8.00170 8.43944 9.29614 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.009488 B = 0.005538 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.439398 B = 5054.709066 C = 5790.007630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.126 4.126 4 C 0.150 3.850 5 N -0.605 5.605 6 C -0.260 4.260 7 H 0.062 0.938 8 C -0.030 4.030 9 N -0.883 5.883 10 Si 0.935 3.065 11 H -0.294 1.294 12 H -0.300 1.300 13 H -0.286 1.286 14 C 0.200 3.800 15 C -0.068 4.068 16 C -0.054 4.054 17 C -0.163 4.163 18 C -0.121 4.121 19 C -0.174 4.174 20 C 0.097 3.903 21 O -0.577 6.577 22 Si 1.264 2.736 23 C -0.523 4.523 24 C -0.494 4.494 25 C -0.454 4.454 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.037 0.963 35 H 0.246 0.754 36 H 0.018 0.982 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.120 0.880 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.087 0.913 43 H 0.043 0.957 44 H 0.060 0.940 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.059 0.941 48 H 0.069 0.931 49 H 0.085 0.915 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.479 -2.488 9.928 10.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.166 4.166 4 C 0.024 3.976 5 N -0.326 5.326 6 C -0.389 4.389 7 H 0.080 0.920 8 C -0.227 4.227 9 N -0.529 5.529 10 Si 0.766 3.234 11 H -0.222 1.222 12 H -0.226 1.226 13 H -0.212 1.212 14 C 0.075 3.925 15 C -0.071 4.071 16 C -0.072 4.072 17 C -0.181 4.181 18 C -0.139 4.139 19 C -0.193 4.193 20 C 0.053 3.947 21 O -0.532 6.532 22 Si 1.402 2.598 23 C -0.623 4.623 24 C -0.598 4.598 25 C -0.562 4.562 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.036 0.964 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.138 0.862 40 H 0.160 0.840 41 H 0.157 0.843 42 H 0.106 0.894 43 H 0.062 0.938 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.100 0.900 47 H 0.078 0.922 48 H 0.088 0.912 49 H 0.104 0.896 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.500 -2.594 9.942 10.287 hybrid contribution 0.082 1.339 -1.521 2.028 sum -0.417 -1.255 8.421 8.524 Atomic orbital electron populations 1.21733 0.95136 1.01980 1.01501 1.21445 0.96426 0.95750 1.01871 1.22037 0.97521 0.96742 1.00322 1.20870 0.92824 0.85217 0.98673 1.44110 1.76202 1.10184 1.02060 1.19219 1.26085 1.06532 0.87111 0.92033 1.25112 0.97324 1.01124 0.99150 1.70306 1.27028 1.22764 1.32767 0.85855 0.76301 0.79951 0.81270 1.22193 1.22620 1.21233 1.19730 0.89456 0.99002 0.84334 1.20649 0.99195 0.96253 0.90975 1.20709 0.92836 0.95499 0.98190 1.21245 0.96888 1.03139 0.96871 1.20987 0.99791 0.99336 0.93812 1.21273 0.93309 1.03434 1.01250 1.18029 0.89255 0.98289 0.89096 1.83681 1.58900 1.44573 1.66043 0.77314 0.66206 0.51309 0.64943 1.27520 1.04902 1.06319 1.23577 1.26853 1.21656 1.05390 1.05884 1.26130 1.10262 1.08193 1.11579 0.93218 0.91452 0.93058 0.92010 0.91910 0.93895 0.93856 0.94131 0.94499 0.94318 0.96449 0.88745 0.87893 0.86174 0.84046 0.84301 0.89436 0.93824 0.92097 0.90051 0.89972 0.92205 0.91150 0.89614 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.91 71.98 0.71 -2.71 16 2 C -0.12 -3.21 5.93 30.59 0.18 -3.03 16 3 C -0.13 -4.47 5.54 30.59 0.17 -4.30 16 4 C 0.15 6.10 5.25 86.38 0.45 6.55 16 5 N -0.60 -28.81 1.36 -706.35 -0.96 -29.77 16 6 C -0.26 -13.50 9.08 84.03 0.76 -12.74 16 7 H 0.06 3.23 7.91 -2.91 -0.02 3.20 16 8 C -0.03 -1.55 4.92 84.86 0.42 -1.14 16 9 N -0.88 -45.85 6.78 21.65 0.15 -45.70 16 10 Si 0.94 44.12 29.60 68.60 2.03 46.15 16 11 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 12 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 13 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 14 C 0.20 9.44 4.45 85.63 0.38 9.83 16 15 C -0.07 -3.00 4.59 -19.77 -0.09 -3.09 16 16 C -0.05 -2.39 7.97 22.26 0.18 -2.22 16 17 C -0.16 -6.15 10.04 22.28 0.22 -5.93 16 18 C -0.12 -4.00 10.04 22.26 0.22 -3.77 16 19 C -0.17 -5.91 7.95 22.37 0.18 -5.73 16 20 C 0.10 3.78 4.65 22.51 0.10 3.89 16 21 O -0.58 -20.60 8.00 -92.48 -0.74 -21.34 16 22 Si 1.26 36.69 12.71 68.60 0.87 37.56 16 23 C -0.52 -19.60 7.30 113.37 0.83 -18.77 16 24 C -0.49 -12.81 7.65 113.37 0.87 -11.95 16 25 C -0.45 -10.34 8.65 113.37 0.98 -9.36 16 26 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.04 1.65 8.04 -2.39 -0.02 1.63 16 34 H 0.04 1.47 8.07 -2.39 -0.02 1.45 16 35 H 0.25 12.89 7.09 -92.71 -0.66 12.23 16 36 H 0.02 0.82 8.11 -2.38 -0.02 0.80 16 37 H 0.09 4.79 3.14 -2.39 -0.01 4.78 16 38 H 0.10 5.15 6.33 -2.91 -0.02 5.13 16 39 H 0.12 4.00 8.06 -2.91 -0.02 3.98 16 40 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 41 H 0.14 3.89 7.58 -2.91 -0.02 3.87 16 42 H 0.09 3.83 4.57 -2.39 -0.01 3.82 16 43 H 0.04 1.79 6.58 -2.39 -0.02 1.77 16 44 H 0.06 2.00 7.96 -2.39 -0.02 1.99 16 45 H 0.08 1.85 7.96 -2.39 -0.02 1.83 16 46 H 0.08 1.81 7.96 -2.39 -0.02 1.79 16 47 H 0.06 1.77 6.91 -2.38 -0.02 1.76 16 48 H 0.07 1.66 7.96 -2.39 -0.02 1.64 16 49 H 0.08 1.68 7.96 -2.38 -0.02 1.66 16 50 H 0.09 1.77 7.96 -2.39 -0.02 1.75 16 Total: -1.00 -57.45 388.94 8.91 -48.53 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: 0.99 Total: 29.03 kcal Atomic # 6 Polarization: -71.03 SS G_CDS: 6.57 Total: -64.46 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -0.82 Total: -75.47 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.74 Total: -21.34 kcal Atomic # 14 Polarization: 80.82 SS G_CDS: 2.90 Total: 83.72 kcal Total: -57.45 8.91 -48.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237725969.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.555 kcal (2) G-P(sol) polarization free energy of solvation -57.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds