Wall clock time and date at job start Sat Apr 11 2020 00:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 O 1.42905 * 109.46728 * 180.02562 * 3 2 1 5 5 C 1.35896 * 117.00039 * 179.97438 * 4 3 2 6 6 C 1.38715 * 120.03773 * 359.72152 * 5 4 3 7 7 C 1.38354 * 119.91363 * 179.77225 * 6 5 4 8 8 F 1.35098 * 119.99055 * 180.23175 * 7 6 5 9 9 C 1.38515 * 120.00707 * 0.50234 * 7 6 5 10 10 C 1.38209 * 120.08348 * 359.75239 * 9 7 6 11 11 C 1.38175 * 120.07990 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00074 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47488 * 259.98113 * 12 11 10 14 14 C 1.46845 * 110.99873 * 294.21133 * 13 12 11 15 15 C 1.53044 * 109.52593 * 174.15862 * 14 13 12 16 16 C 1.53122 * 109.27522 * 59.17940 * 15 14 13 17 17 C 1.53120 * 109.16012 * 302.34393 * 16 15 14 18 18 H 1.08994 * 109.53996 * 297.69761 * 17 16 15 19 19 C 1.50700 * 109.50419 * 177.59783 * 17 16 15 20 20 H 1.08000 * 120.00126 * 240.20348 * 19 17 16 21 21 C 1.37873 * 119.99803 * 60.19567 * 19 17 16 22 22 N 1.31516 * 120.00172 * 0.02562 * 21 19 17 23 23 Si 1.86801 * 119.99846 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47462 * 60.00297 * 23 21 19 25 25 H 1.48499 * 109.47164 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47043 * 300.00337 * 23 21 19 27 27 C 1.46848 * 111.00402 * 170.00397 * 13 12 11 28 28 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 30 30 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 31 31 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 32 32 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 33 33 H 1.09000 * 109.47486 * 60.00167 * 3 2 1 34 34 H 1.09001 * 109.47362 * 299.99445 * 3 2 1 35 35 H 1.07995 * 120.04341 * 0.02562 * 6 5 4 36 36 H 1.07996 * 119.95890 * 179.76988 * 9 7 6 37 37 H 1.08003 * 119.96089 * 179.97438 * 10 9 7 38 38 H 1.09000 * 109.47402 * 19.98235 * 12 11 10 39 39 H 1.09004 * 109.46975 * 139.98094 * 12 11 10 40 40 H 1.08998 * 109.46297 * 294.17349 * 14 13 12 41 41 H 1.08996 * 109.46532 * 54.14314 * 14 13 12 42 42 H 1.09000 * 109.49817 * 299.23877 * 15 14 13 43 43 H 1.08998 * 109.50376 * 179.11998 * 15 14 13 44 44 H 1.08997 * 109.52212 * 182.44539 * 16 15 14 45 45 H 1.08998 * 109.52100 * 62.25202 * 16 15 14 46 46 H 0.96994 * 119.99867 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.45852 * 305.85420 * 27 13 12 48 48 H 1.08991 * 109.46493 * 65.81680 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0861 2.6532 -0.0012 6 6 3.3314 3.8171 -0.0071 7 6 3.9623 5.0485 -0.0029 8 9 3.2288 6.1830 -0.0039 9 6 5.3457 5.1181 -0.0035 10 6 6.0977 3.9585 -0.0030 11 6 5.4714 2.7269 -0.0014 12 6 6.2931 1.4636 -0.0003 13 7 6.3577 0.9202 -1.3635 14 6 5.0324 0.4807 -1.8182 15 6 5.1098 0.0578 -3.2870 16 6 6.1234 -1.0808 -3.4323 17 6 7.4835 -0.6129 -2.9072 18 1 7.8377 0.2248 -3.5079 19 6 8.4727 -1.7466 -2.9920 20 1 8.9497 -2.1153 -2.0959 21 6 8.7686 -2.3133 -4.2136 22 7 8.1880 -1.8641 -5.3048 23 14 9.9942 -3.7191 -4.3187 24 1 9.5096 -4.8606 -3.5017 25 1 10.1361 -4.1474 -5.7335 26 1 11.3119 -3.2665 -3.8044 27 6 7.3372 -0.1705 -1.4494 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 2.2529 3.7622 -0.0107 36 1 5.8373 6.0797 -0.0040 37 1 7.1762 4.0151 -0.0038 38 1 7.3009 1.6861 0.3504 39 1 5.8317 0.7307 0.6616 40 1 4.7029 -0.3643 -1.2138 41 1 4.3221 1.3008 -1.7134 42 1 5.4260 0.9062 -3.8937 43 1 4.1294 -0.2831 -3.6197 44 1 6.2138 -1.3559 -4.4831 45 1 5.7875 -1.9431 -2.8565 46 1 8.3959 -2.2630 -6.1641 47 1 8.3009 0.1766 -1.0768 48 1 6.9969 -1.0125 -0.8467 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237905410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:38:34 Heat of formation + Delta-G solvation = -68.298065 kcal Electronic energy + Delta-G solvation = -28033.180268 eV Core-core repulsion = 24195.215660 eV Total energy + Delta-G solvation = -3837.964609 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.185 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.00100 -40.58020 -38.02004 -37.46698 -34.19402 -33.85713 -32.11468 -30.57453 -30.13439 -29.51581 -26.90576 -25.52162 -24.88247 -23.07863 -22.40885 -21.64996 -21.37861 -20.57499 -18.55120 -18.51720 -17.00762 -16.76933 -16.31841 -15.95829 -15.64698 -15.56907 -15.05661 -14.69681 -14.51502 -14.07826 -14.04005 -13.97623 -13.41529 -13.18882 -12.92055 -12.64827 -12.50931 -12.38583 -12.24773 -12.01821 -11.77641 -11.53184 -11.45799 -11.32743 -11.17737 -10.97866 -10.89789 -10.79070 -10.63009 -10.49544 -9.93794 -9.73761 -9.40242 -9.03798 -8.87972 -8.64599 -8.24915 -8.23566 -7.52692 -5.92843 -3.99032 1.06543 1.22508 2.98840 3.34653 3.39357 3.41571 3.48875 4.13013 4.45565 4.54952 4.64149 4.68438 4.74003 4.87243 4.89385 4.95824 5.03726 5.15306 5.20763 5.37008 5.38744 5.49190 5.64307 5.72764 5.79554 5.83491 5.90454 5.93982 5.98346 6.01824 6.06296 6.11982 6.25692 6.41123 6.43564 6.51422 6.61640 6.66786 6.83745 6.85253 7.04461 7.23959 7.30350 7.47276 7.77419 7.80587 7.91065 8.14799 8.23562 8.53664 9.05049 9.64888 11.13001 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.014193 B = 0.003470 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.382377 B = 8067.760777 C = 9354.507824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.054 3.946 4 O -0.297 6.297 5 C 0.165 3.835 6 C -0.248 4.248 7 C 0.128 3.872 8 F -0.142 7.142 9 C -0.190 4.190 10 C -0.038 4.038 11 C -0.106 4.106 12 C 0.100 3.900 13 N -0.533 5.533 14 C 0.065 3.935 15 C -0.119 4.119 16 C -0.109 4.109 17 C 0.056 3.944 18 H 0.034 0.966 19 C -0.515 4.515 20 H 0.052 0.948 21 C 0.063 3.937 22 N -0.888 5.888 23 Si 0.889 3.111 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.278 1.278 27 C 0.068 3.932 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.141 0.859 38 H 0.079 0.921 39 H 0.040 0.960 40 H 0.024 0.976 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.042 0.958 44 H 0.088 0.912 45 H 0.028 0.972 46 H 0.259 0.741 47 H 0.058 0.942 48 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.090 10.206 12.139 20.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.021 4.021 4 O -0.210 6.210 5 C 0.118 3.882 6 C -0.267 4.267 7 C 0.109 3.891 8 F -0.120 7.120 9 C -0.209 4.209 10 C -0.056 4.056 11 C -0.107 4.107 12 C -0.028 4.028 13 N -0.257 5.257 14 C -0.063 4.063 15 C -0.157 4.157 16 C -0.147 4.147 17 C 0.037 3.963 18 H 0.052 0.948 19 C -0.553 4.553 20 H 0.071 0.929 21 C -0.138 4.138 22 N -0.527 5.527 23 Si 0.718 3.282 24 H -0.204 1.204 25 H -0.214 1.214 26 H -0.203 1.203 27 C -0.059 4.059 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.159 0.841 38 H 0.097 0.903 39 H 0.058 0.942 40 H 0.042 0.958 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.107 0.893 45 H 0.047 0.953 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -12.890 10.368 11.627 20.220 hybrid contribution -0.030 -1.017 0.388 1.089 sum -12.920 9.351 12.016 19.969 Atomic orbital electron populations 1.21684 0.94350 1.02550 1.02002 1.21492 0.95884 0.94661 1.04169 1.22921 0.78745 0.99127 1.01331 1.86349 1.21084 1.25978 1.87574 1.18451 0.91576 0.83742 0.94387 1.21057 1.00817 0.91240 1.13614 1.17346 0.89253 0.81304 1.01209 1.91482 1.77485 1.49216 1.93846 1.21011 0.91660 1.00174 1.08104 1.20761 1.00331 0.89860 0.94693 1.19375 0.90264 0.96451 1.04599 1.20842 0.98236 0.92085 0.91596 1.62098 1.08384 1.35384 1.19841 1.22242 0.89812 0.98113 0.96104 1.21707 0.98793 1.00220 0.94930 1.21632 0.94811 0.94361 1.03900 1.18645 0.92867 0.95816 0.88948 0.94821 1.21124 1.23901 1.17275 0.93032 0.92937 1.24926 0.96115 0.96938 0.95814 1.69888 1.42766 1.41872 0.98194 0.86708 0.81909 0.82776 0.76855 1.20422 1.21360 1.20322 1.22311 0.93010 0.89600 1.00944 0.91685 0.92595 0.92351 0.90301 0.90839 0.92174 0.91862 0.84570 0.84744 0.84101 0.90272 0.94155 0.95793 0.91295 0.92458 0.93962 0.89334 0.95298 0.93065 0.92382 0.96370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.12 -1.13 6.30 -26.73 -0.17 -1.30 16 3 C 0.05 0.53 4.74 37.16 0.18 0.71 16 4 O -0.30 -3.89 6.26 -19.41 -0.12 -4.01 16 5 C 0.16 2.20 5.40 -39.23 -0.21 1.99 16 6 C -0.25 -3.00 9.02 -39.36 -0.35 -3.35 16 7 C 0.13 1.58 7.30 -39.44 -0.29 1.29 16 8 F -0.14 -1.75 17.27 2.25 0.04 -1.71 16 9 C -0.19 -2.19 10.02 -39.49 -0.40 -2.58 16 10 C -0.04 -0.46 9.66 -39.62 -0.38 -0.84 16 11 C -0.11 -1.47 5.17 -104.47 -0.54 -2.01 16 12 C 0.10 1.55 4.99 -4.98 -0.02 1.52 16 13 N -0.53 -10.03 4.65 -236.11 -1.10 -11.13 16 14 C 0.06 1.19 4.05 -3.83 -0.02 1.18 16 15 C -0.12 -2.42 6.09 -26.65 -0.16 -2.58 16 16 C -0.11 -2.63 5.03 -26.61 -0.13 -2.76 16 17 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 18 H 0.03 0.95 8.14 -51.93 -0.42 0.52 16 19 C -0.51 -14.18 8.56 -34.44 -0.29 -14.48 16 20 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 21 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 22 N -0.89 -25.53 11.36 55.43 0.63 -24.90 16 23 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.07 1.46 4.68 -3.83 -0.02 1.44 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 34 H 0.06 0.59 7.65 -51.93 -0.40 0.19 16 35 H 0.14 1.39 6.30 -52.49 -0.33 1.06 16 36 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.14 1.46 8.04 -52.48 -0.42 1.03 16 38 H 0.08 1.12 7.85 -51.93 -0.41 0.71 16 39 H 0.04 0.64 7.84 -51.93 -0.41 0.23 16 40 H 0.02 0.45 7.98 -51.93 -0.41 0.04 16 41 H 0.07 1.19 4.44 -51.93 -0.23 0.96 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.09 2.38 6.16 -51.93 -0.32 2.06 16 45 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.06 1.21 8.02 -51.93 -0.42 0.79 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 376.37 15.07 5.67 5.67 Total: -1.00 -29.32 376.37 -10.58 -39.90 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -7.94 Total: -0.55 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -2.75 Total: -19.58 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.47 Total: -36.03 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.12 Total: -4.01 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.32 -10.58 -39.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237905410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.398 kcal (2) G-P(sol) polarization free energy of solvation -29.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds