Wall clock time and date at job start Sat Apr 11 2020 00:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 O 1.42905 * 109.46728 * 180.02562 * 3 2 1 5 5 C 1.35896 * 117.00039 * 179.97438 * 4 3 2 6 6 C 1.38715 * 120.03773 * 359.72152 * 5 4 3 7 7 C 1.38354 * 119.91363 * 179.77225 * 6 5 4 8 8 F 1.35098 * 119.99055 * 180.23175 * 7 6 5 9 9 C 1.38515 * 120.00707 * 0.50234 * 7 6 5 10 10 C 1.38209 * 120.08348 * 359.75239 * 9 7 6 11 11 C 1.38175 * 120.07990 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00074 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47488 * 259.98113 * 12 11 10 14 14 C 1.46845 * 110.99873 * 294.21133 * 13 12 11 15 15 C 1.53044 * 109.52593 * 174.15862 * 14 13 12 16 16 C 1.53122 * 109.27522 * 59.17940 * 15 14 13 17 17 C 1.53120 * 109.16012 * 302.34393 * 16 15 14 18 18 H 1.08994 * 109.53996 * 297.69761 * 17 16 15 19 19 C 1.50700 * 109.50419 * 177.59783 * 17 16 15 20 20 H 1.08000 * 120.00126 * 240.20348 * 19 17 16 21 21 C 1.37873 * 119.99803 * 60.19567 * 19 17 16 22 22 N 1.31516 * 120.00172 * 0.02562 * 21 19 17 23 23 Si 1.86801 * 119.99846 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47462 * 60.00297 * 23 21 19 25 25 H 1.48499 * 109.47164 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47043 * 300.00337 * 23 21 19 27 27 C 1.46848 * 111.00402 * 170.00397 * 13 12 11 28 28 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 30 30 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 31 31 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 32 32 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 33 33 H 1.09000 * 109.47486 * 60.00167 * 3 2 1 34 34 H 1.09001 * 109.47362 * 299.99445 * 3 2 1 35 35 H 1.07995 * 120.04341 * 0.02562 * 6 5 4 36 36 H 1.07996 * 119.95890 * 179.76988 * 9 7 6 37 37 H 1.08003 * 119.96089 * 179.97438 * 10 9 7 38 38 H 1.09000 * 109.47402 * 19.98235 * 12 11 10 39 39 H 1.09004 * 109.46975 * 139.98094 * 12 11 10 40 40 H 1.08998 * 109.46297 * 294.17349 * 14 13 12 41 41 H 1.08996 * 109.46532 * 54.14314 * 14 13 12 42 42 H 1.09000 * 109.49817 * 299.23877 * 15 14 13 43 43 H 1.08998 * 109.50376 * 179.11998 * 15 14 13 44 44 H 1.08997 * 109.52212 * 182.44539 * 16 15 14 45 45 H 1.08998 * 109.52100 * 62.25202 * 16 15 14 46 46 H 0.96994 * 119.99867 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.45852 * 305.85420 * 27 13 12 48 48 H 1.08991 * 109.46493 * 65.81680 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0861 2.6532 -0.0012 6 6 3.3314 3.8171 -0.0071 7 6 3.9623 5.0485 -0.0029 8 9 3.2288 6.1830 -0.0039 9 6 5.3457 5.1181 -0.0035 10 6 6.0977 3.9585 -0.0030 11 6 5.4714 2.7269 -0.0014 12 6 6.2931 1.4636 -0.0003 13 7 6.3577 0.9202 -1.3635 14 6 5.0324 0.4807 -1.8182 15 6 5.1098 0.0578 -3.2870 16 6 6.1234 -1.0808 -3.4323 17 6 7.4835 -0.6129 -2.9072 18 1 7.8377 0.2248 -3.5079 19 6 8.4727 -1.7466 -2.9920 20 1 8.9497 -2.1153 -2.0959 21 6 8.7686 -2.3133 -4.2136 22 7 8.1880 -1.8641 -5.3048 23 14 9.9942 -3.7191 -4.3187 24 1 9.5096 -4.8606 -3.5017 25 1 10.1361 -4.1474 -5.7335 26 1 11.3119 -3.2665 -3.8044 27 6 7.3372 -0.1705 -1.4494 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 2.2529 3.7622 -0.0107 36 1 5.8373 6.0797 -0.0040 37 1 7.1762 4.0151 -0.0038 38 1 7.3009 1.6861 0.3504 39 1 5.8317 0.7307 0.6616 40 1 4.7029 -0.3643 -1.2138 41 1 4.3221 1.3008 -1.7134 42 1 5.4260 0.9062 -3.8937 43 1 4.1294 -0.2831 -3.6197 44 1 6.2138 -1.3559 -4.4831 45 1 5.7875 -1.9431 -2.8565 46 1 8.3959 -2.2630 -6.1641 47 1 8.3009 0.1766 -1.0768 48 1 6.9969 -1.0125 -0.8467 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237905410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:38:33 Heat of formation + Delta-G solvation = -82.804691 kcal Electronic energy + Delta-G solvation = -28033.809323 eV Core-core repulsion = 24195.215660 eV Total energy + Delta-G solvation = -3838.593663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.185 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.94258 -41.57316 -39.51148 -38.48644 -35.71363 -34.80236 -33.83137 -31.87467 -31.50756 -30.91503 -27.68488 -26.89260 -26.75452 -24.07907 -23.73063 -23.12675 -22.46886 -21.74236 -20.32520 -19.47113 -18.41351 -17.94148 -17.69343 -16.90625 -16.80962 -16.55347 -16.42581 -16.21190 -15.63700 -15.47193 -15.15427 -14.98403 -14.81563 -14.46557 -14.38827 -14.18363 -13.95153 -13.43542 -13.35746 -13.08352 -13.01297 -12.81495 -12.71645 -12.65389 -12.48794 -12.40504 -12.18507 -12.11311 -11.89987 -11.74623 -11.65255 -11.44679 -11.34479 -10.80817 -10.63870 -10.33960 -9.87271 -9.27880 -8.99403 -8.05237 -6.19623 0.09640 0.30236 1.43089 1.44465 1.52007 2.13343 2.43663 2.52095 3.20073 3.21505 3.32762 3.69239 3.81319 3.92565 3.94004 4.04407 4.08019 4.26746 4.28042 4.31946 4.40641 4.45683 4.54580 4.57732 4.60814 4.67697 4.77286 4.82322 4.83979 4.96698 4.97158 5.02471 5.06180 5.13327 5.14879 5.18420 5.21000 5.23386 5.33590 5.40276 5.47103 5.54248 5.65625 5.75975 5.99519 6.14808 6.23371 6.34649 6.39376 6.49961 6.93098 7.48114 8.99198 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.014193 B = 0.003470 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.382377 B = 8067.760777 C = 9354.507824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C 0.049 3.951 4 O -0.315 6.315 5 C 0.156 3.844 6 C -0.247 4.247 7 C 0.122 3.878 8 F -0.142 7.142 9 C -0.188 4.188 10 C -0.037 4.037 11 C -0.127 4.127 12 C 0.105 3.895 13 N -0.541 5.541 14 C 0.077 3.923 15 C -0.112 4.112 16 C -0.101 4.101 17 C 0.054 3.946 18 H -0.003 1.003 19 C -0.536 4.536 20 H 0.052 0.948 21 C 0.014 3.986 22 N -0.916 5.916 23 Si 0.954 3.046 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.270 1.270 27 C 0.082 3.918 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.091 0.909 39 H 0.037 0.963 40 H 0.020 0.980 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.020 0.980 46 H 0.260 0.740 47 H 0.062 0.938 48 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.781 11.016 13.409 22.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.026 4.026 4 O -0.229 6.229 5 C 0.110 3.890 6 C -0.267 4.267 7 C 0.102 3.898 8 F -0.121 7.121 9 C -0.207 4.207 10 C -0.055 4.055 11 C -0.128 4.128 12 C -0.022 4.022 13 N -0.265 5.265 14 C -0.050 4.050 15 C -0.150 4.150 16 C -0.139 4.139 17 C 0.035 3.965 18 H 0.015 0.985 19 C -0.575 4.575 20 H 0.071 0.929 21 C -0.184 4.184 22 N -0.555 5.555 23 Si 0.780 3.220 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.195 1.195 27 C -0.045 4.045 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.171 0.829 36 H 0.175 0.825 37 H 0.175 0.825 38 H 0.110 0.890 39 H 0.055 0.945 40 H 0.038 0.962 41 H 0.105 0.895 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.039 0.961 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -13.592 11.188 12.915 21.833 hybrid contribution 0.144 -1.212 0.002 1.220 sum -13.448 9.976 12.917 21.147 Atomic orbital electron populations 1.21665 0.92613 1.03082 1.02792 1.21496 0.97324 0.94140 1.03113 1.23140 0.77248 0.99728 1.02452 1.86307 1.22807 1.26160 1.87580 1.18543 0.91573 0.84222 0.94660 1.21204 1.01731 0.90745 1.12986 1.17533 0.89706 0.81360 1.01171 1.91483 1.77552 1.49228 1.93844 1.21254 0.91447 1.00948 1.07037 1.20970 1.01288 0.89403 0.93869 1.19364 0.90582 0.96232 1.06612 1.20832 0.99453 0.92680 0.89279 1.62043 1.07959 1.33996 1.22518 1.22136 0.90089 0.98574 0.94230 1.21628 0.98536 0.98253 0.96583 1.21436 0.95547 0.95433 1.01482 1.18567 0.92897 0.94013 0.90992 0.98494 1.21503 1.24628 1.18097 0.93254 0.92927 1.25719 0.97871 0.99383 0.95471 1.70039 1.43895 1.43036 0.98572 0.85681 0.79718 0.79722 0.76928 1.19731 1.21022 1.19543 1.21989 0.94196 0.90362 0.97991 0.91331 0.91419 0.91922 0.91990 0.91282 0.90478 0.91191 0.82857 0.82546 0.82490 0.89025 0.94482 0.96166 0.89462 0.93637 0.91923 0.92527 0.96115 0.93125 0.91977 0.96931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.91 71.98 0.71 -1.05 16 2 C -0.12 -2.10 6.30 30.60 0.19 -1.91 16 3 C 0.05 0.87 4.74 71.98 0.34 1.21 16 4 O -0.31 -7.80 6.26 -92.39 -0.58 -8.38 16 5 C 0.16 3.91 5.40 22.50 0.12 4.03 16 6 C -0.25 -5.43 9.02 22.41 0.20 -5.23 16 7 C 0.12 2.71 7.30 22.36 0.16 2.87 16 8 F -0.14 -3.19 17.27 44.97 0.78 -2.42 16 9 C -0.19 -3.84 10.02 22.33 0.22 -3.62 16 10 C -0.04 -0.82 9.66 22.25 0.21 -0.60 16 11 C -0.13 -3.33 5.17 -19.76 -0.10 -3.43 16 12 C 0.10 3.12 4.99 85.56 0.43 3.54 16 13 N -0.54 -20.16 4.65 -900.93 -4.19 -24.34 16 14 C 0.08 2.80 4.05 86.33 0.35 3.15 16 15 C -0.11 -4.60 6.09 30.65 0.19 -4.42 16 16 C -0.10 -5.01 5.03 30.68 0.15 -4.86 16 17 C 0.05 2.82 2.26 -11.49 -0.03 2.80 16 18 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 19 C -0.54 -30.18 8.56 25.60 0.22 -29.96 16 20 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 21 C 0.01 0.80 5.30 84.65 0.45 1.25 16 22 N -0.92 -54.03 11.36 21.45 0.24 -53.79 16 23 Si 0.95 44.10 29.54 68.60 2.03 46.12 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 27 C 0.08 3.55 4.68 86.33 0.40 3.95 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 1.12 7.67 -2.39 -0.02 1.10 16 34 H 0.07 1.15 7.65 -2.39 -0.02 1.13 16 35 H 0.15 2.72 6.30 -2.91 -0.02 2.70 16 36 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 37 H 0.16 2.87 8.04 -2.91 -0.02 2.85 16 38 H 0.09 2.46 7.85 -2.39 -0.02 2.44 16 39 H 0.04 1.13 7.84 -2.38 -0.02 1.11 16 40 H 0.02 0.75 7.98 -2.39 -0.02 0.73 16 41 H 0.09 2.90 4.44 -2.39 -0.01 2.89 16 42 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.06 3.17 6.16 -2.39 -0.01 3.15 16 45 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 47 H 0.06 2.59 8.02 -2.39 -0.02 2.57 16 48 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -63.74 376.37 3.45 -60.30 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.93 Total: 14.76 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 4.24 Total: -32.25 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -3.94 Total: -78.13 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.58 Total: -8.38 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.78 Total: -2.42 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -63.74 3.45 -60.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237905410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.506 kcal (2) G-P(sol) polarization free energy of solvation -63.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds