Wall clock time and date at job start Sat Apr 11 2020 00:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.47045 * 2 1 4 4 C 1.35894 * 116.99868 * 180.02562 * 3 2 1 5 5 C 1.38718 * 120.04547 * 0.02562 * 4 3 2 6 6 C 1.38333 * 119.92345 * 179.97438 * 5 4 3 7 7 F 1.35104 * 120.00208 * 180.02562 * 6 5 4 8 8 C 1.38526 * 120.00542 * 359.97438 * 6 5 4 9 9 C 1.38201 * 120.08402 * 0.02562 * 8 6 5 10 10 C 1.50701 * 119.96032 * 180.02562 * 9 8 6 11 11 N 1.46898 * 109.47402 * 90.00297 * 10 9 8 12 12 C 1.46893 * 111.00077 * 190.00346 * 11 10 9 13 13 C 1.50697 * 109.47587 * 162.40966 * 12 11 10 14 14 H 1.08010 * 119.99483 * 354.34589 * 13 12 11 15 15 C 1.37872 * 120.00487 * 174.35486 * 13 12 11 16 16 N 1.31514 * 119.99758 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00122 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47095 * 89.99587 * 17 15 13 19 19 H 1.48500 * 109.47027 * 209.99705 * 17 15 13 20 20 H 1.48502 * 109.47127 * 329.99430 * 17 15 13 21 21 C 1.46901 * 111.00231 * 66.04041 * 11 10 9 22 22 C 1.54893 * 110.47834 * 100.92552 * 21 11 10 23 23 C 1.55238 * 102.58489 * 156.67780 * 22 21 11 24 24 C 1.54266 * 104.23241 * 322.08285 * 23 22 21 25 25 C 1.53876 * 106.59886 * 23.61169 * 24 23 22 26 26 C 1.38183 * 120.08190 * 0.27643 * 9 8 6 27 27 H 1.08994 * 109.47124 * 299.99356 * 1 2 3 28 28 H 1.09000 * 109.47661 * 59.99520 * 1 2 3 29 29 H 1.09000 * 109.47262 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46635 * 240.00494 * 2 1 3 31 31 H 1.08995 * 109.47176 * 120.00998 * 2 1 3 32 32 H 1.08002 * 120.03680 * 0.02562 * 5 4 3 33 33 H 1.08000 * 119.95396 * 180.02562 * 8 6 5 34 34 H 1.08999 * 109.46562 * 329.99683 * 10 9 8 35 35 H 1.09007 * 109.46468 * 210.00141 * 10 9 8 36 36 H 1.09002 * 109.47272 * 282.40842 * 12 11 10 37 37 H 1.09004 * 109.47360 * 42.40234 * 12 11 10 38 38 H 0.97002 * 119.99781 * 180.02562 * 16 15 13 39 39 H 1.08998 * 110.43257 * 338.38791 * 21 11 10 40 40 H 1.08999 * 110.75481 * 275.06343 * 22 21 11 41 41 H 1.08994 * 110.76421 * 38.44001 * 22 21 11 42 42 H 1.08999 * 110.46875 * 203.39099 * 23 22 21 43 43 H 1.09008 * 110.58034 * 80.82799 * 23 22 21 44 44 H 1.08996 * 110.02854 * 264.32768 * 24 23 22 45 45 H 1.09001 * 110.07542 * 142.91733 * 24 23 22 46 46 H 1.08999 * 110.03340 * 240.71968 * 25 24 23 47 47 H 1.08992 * 110.03181 * 119.28561 * 25 24 23 48 48 H 1.07996 * 120.00514 * 179.70328 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5253 -0.0005 5 6 4.1994 0.4259 -0.0016 6 6 5.5704 0.6101 -0.0027 7 9 6.3957 -0.4596 -0.0042 8 6 6.0973 1.8912 -0.0033 9 6 5.2548 2.9867 -0.0022 10 6 5.8310 4.3792 -0.0034 11 7 6.0161 4.8315 -1.3887 12 6 6.7900 6.0791 -1.4363 13 6 7.3273 6.2842 -2.8292 14 1 7.1933 5.5174 -3.5780 15 6 7.9901 7.4504 -3.1477 16 7 8.1530 8.3842 -2.2360 17 14 8.6568 7.7043 -4.8742 18 1 7.6203 8.3565 -5.7141 19 1 9.8632 8.5683 -4.8168 20 1 9.0169 6.3899 -5.4640 21 6 4.7233 4.9875 -2.0688 22 6 4.3119 6.4801 -2.1147 23 6 3.3367 6.5251 -3.3217 24 6 3.9587 5.5560 -4.3482 25 6 4.8404 4.5784 -3.5515 26 6 3.8848 2.8069 0.0052 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5140 0.8898 32 1 3.7880 -0.5727 -0.0024 33 1 7.1678 2.0340 -0.0045 34 1 6.7931 4.3747 0.5090 35 1 5.1483 5.0553 0.5114 36 1 6.1460 6.9167 -1.1684 37 1 7.6197 6.0191 -0.7319 38 1 8.6190 9.2049 -2.4602 39 1 3.9566 4.3956 -1.5690 40 1 3.8048 6.7695 -1.1942 41 1 5.1795 7.1147 -2.2950 42 1 3.2844 7.5336 -3.7321 43 1 2.3449 6.1827 -3.0260 44 1 4.5671 6.1097 -5.0633 45 1 3.1733 5.0097 -4.8706 46 1 5.8767 4.6576 -3.8800 47 1 4.4824 3.5578 -3.6866 48 1 3.2276 3.6638 0.0108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237916897.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:38:42 Heat of formation + Delta-G solvation = -52.458816 kcal Electronic energy + Delta-G solvation = -28038.139984 eV Core-core repulsion = 24200.862217 eV Total energy + Delta-G solvation = -3837.277767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.185 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.84534 -40.24487 -38.74743 -37.34360 -34.50036 -32.73051 -32.11773 -30.94411 -29.50216 -28.00981 -27.31228 -27.12271 -24.63252 -23.32948 -22.62826 -21.93312 -20.89283 -19.65144 -18.64901 -17.97687 -16.79434 -16.41785 -16.33825 -16.13909 -15.91927 -15.49394 -15.23498 -14.99210 -14.46237 -14.34151 -13.96259 -13.44719 -13.34935 -13.19798 -13.00063 -12.89027 -12.45683 -12.33808 -11.96269 -11.82163 -11.70255 -11.42176 -11.37994 -11.05648 -10.96361 -10.80153 -10.68392 -10.65524 -10.47760 -10.28550 -10.25862 -10.08478 -9.51595 -9.24863 -8.95698 -8.70437 -8.38817 -8.19043 -7.16362 -6.01085 -4.00824 1.19325 1.37233 2.99156 3.32270 3.39338 3.43082 3.62899 4.24820 4.44180 4.63040 4.64399 4.79585 4.92754 4.97944 5.00923 5.09056 5.20330 5.33575 5.37807 5.41682 5.44786 5.49761 5.55584 5.69037 5.73215 5.79513 5.95850 6.07354 6.12377 6.19593 6.23984 6.25574 6.29127 6.32361 6.46674 6.56849 6.64365 6.65299 6.74521 6.76593 7.00432 7.04154 7.15658 7.29842 7.37923 7.50559 7.93883 8.13828 8.20702 8.55135 9.08329 9.62767 11.08978 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.015034 B = 0.003705 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.016836 B = 7554.711053 C = 8519.854522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.311 6.311 4 C 0.156 3.844 5 C -0.255 4.255 6 C 0.134 3.866 7 F -0.141 7.141 8 C -0.167 4.167 9 C 0.008 3.992 10 C 0.087 3.913 11 N -0.524 5.524 12 C 0.181 3.819 13 C -0.496 4.496 14 H 0.070 0.930 15 C 0.056 3.944 16 N -0.900 5.900 17 Si 0.890 3.110 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.273 1.273 21 C 0.087 3.913 22 C -0.164 4.164 23 C -0.117 4.117 24 C -0.118 4.118 25 C -0.113 4.113 26 C -0.157 4.157 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.083 0.917 35 H 0.038 0.962 36 H 0.018 0.982 37 H 0.021 0.979 38 H 0.260 0.740 39 H 0.064 0.936 40 H 0.043 0.957 41 H 0.123 0.877 42 H 0.055 0.945 43 H 0.049 0.951 44 H 0.060 0.940 45 H 0.047 0.953 46 H 0.093 0.907 47 H 0.041 0.959 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.784 -13.946 4.956 19.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.225 6.225 4 C 0.110 3.890 5 C -0.275 4.275 6 C 0.115 3.885 7 F -0.119 7.119 8 C -0.187 4.187 9 C 0.007 3.993 10 C -0.041 4.041 11 N -0.247 5.247 12 C 0.057 3.943 13 C -0.535 4.535 14 H 0.088 0.912 15 C -0.145 4.145 16 N -0.540 5.540 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.198 1.198 21 C -0.022 4.022 22 C -0.202 4.202 23 C -0.155 4.155 24 C -0.156 4.156 25 C -0.151 4.151 26 C -0.176 4.176 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.102 0.898 35 H 0.057 0.943 36 H 0.035 0.965 37 H 0.039 0.961 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.141 0.859 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.111 0.889 47 H 0.060 0.940 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.540 -14.030 4.737 19.404 hybrid contribution 0.140 0.334 -0.552 0.660 sum -12.400 -13.696 4.185 18.943 Atomic orbital electron populations 1.21772 0.92688 1.02784 1.03648 1.22798 0.95913 0.82068 1.01475 1.86100 1.18698 1.29183 1.88531 1.18559 0.82000 0.93259 0.95176 1.20994 0.92572 0.99349 1.14599 1.17341 0.87051 0.83441 1.00696 1.91485 1.71924 1.54713 1.93793 1.20961 1.01539 0.89945 1.06230 1.19609 0.91449 0.95891 0.92357 1.21104 1.00091 0.89843 0.93069 1.62323 1.16306 1.35517 1.10548 1.20061 0.91962 0.84382 0.97926 1.21251 1.34277 1.01731 0.96201 0.91194 1.24948 0.96449 0.96105 0.97016 1.69949 1.43077 1.07656 1.33292 0.86617 0.78486 0.78146 0.84952 1.20779 1.21436 1.19799 1.22463 0.90170 0.94566 0.94972 1.23480 1.00901 0.99678 0.96178 1.22249 0.97670 0.98774 0.96784 1.22029 0.98203 0.97343 0.97991 1.22263 1.01999 0.96326 0.94492 1.20420 0.94900 0.94713 1.07586 0.91485 0.91392 0.90435 0.91944 0.92029 0.84818 0.84305 0.89843 0.94342 0.96461 0.96062 0.93037 0.91781 0.93828 0.85936 0.92622 0.93251 0.92093 0.93467 0.88878 0.93985 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.05 0.46 5.46 37.16 0.20 0.66 16 3 O -0.31 -3.84 10.14 -19.41 -0.20 -4.04 16 4 C 0.16 2.10 6.69 -39.22 -0.26 1.84 16 5 C -0.26 -3.29 9.02 -39.37 -0.35 -3.65 16 6 C 0.13 1.91 7.30 -39.44 -0.29 1.62 16 7 F -0.14 -2.01 17.27 2.25 0.04 -1.97 16 8 C -0.17 -2.51 9.68 -39.49 -0.38 -2.89 16 9 C 0.01 0.12 5.02 -104.66 -0.53 -0.40 16 10 C 0.09 1.48 5.07 -4.98 -0.03 1.46 16 11 N -0.52 -10.57 4.34 -227.53 -0.99 -11.56 16 12 C 0.18 4.35 4.27 -4.98 -0.02 4.33 16 13 C -0.50 -12.96 7.41 -34.44 -0.26 -13.21 16 14 H 0.07 1.84 5.20 -52.48 -0.27 1.56 16 15 C 0.06 1.50 5.46 -17.82 -0.10 1.41 16 16 N -0.90 -25.56 13.29 55.43 0.74 -24.83 16 17 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 C 0.09 1.63 2.69 -66.05 -0.18 1.46 16 22 C -0.16 -3.17 5.28 -24.55 -0.13 -3.30 16 23 C -0.12 -1.98 6.84 -24.88 -0.17 -2.15 16 24 C -0.12 -2.03 6.80 -25.61 -0.17 -2.20 16 25 C -0.11 -2.12 6.17 -25.61 -0.16 -2.28 16 26 C -0.16 -2.27 8.02 -39.42 -0.32 -2.59 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.50 7.66 -51.92 -0.40 0.11 16 31 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 32 H 0.13 1.42 6.30 -52.49 -0.33 1.08 16 33 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 34 H 0.08 1.40 7.79 -51.93 -0.40 0.99 16 35 H 0.04 0.63 8.06 -51.93 -0.42 0.22 16 36 H 0.02 0.45 5.38 -51.93 -0.28 0.17 16 37 H 0.02 0.55 7.78 -51.93 -0.40 0.15 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.06 1.12 4.65 -51.93 -0.24 0.88 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.12 2.85 4.53 -51.93 -0.24 2.62 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.09 2.00 5.08 -51.93 -0.26 1.73 16 47 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.13 1.89 7.18 -52.49 -0.38 1.51 16 LS Contribution 374.25 15.07 5.64 5.64 Total: -1.00 -28.05 374.25 -9.93 -37.98 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.39 Total: 3.21 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -2.75 Total: -20.55 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: -0.25 Total: -36.38 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.20 Total: -4.04 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.05 -9.93 -37.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237916897.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.484 kcal (2) G-P(sol) polarization free energy of solvation -28.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds