Wall clock time and date at job start Sat Apr 11 2020 00:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.47045 * 2 1 4 4 C 1.35894 * 116.99868 * 180.02562 * 3 2 1 5 5 C 1.38718 * 120.04547 * 0.02562 * 4 3 2 6 6 C 1.38333 * 119.92345 * 179.97438 * 5 4 3 7 7 F 1.35104 * 120.00208 * 180.02562 * 6 5 4 8 8 C 1.38526 * 120.00542 * 359.97438 * 6 5 4 9 9 C 1.38201 * 120.08402 * 0.02562 * 8 6 5 10 10 C 1.50701 * 119.96032 * 180.02562 * 9 8 6 11 11 N 1.46898 * 109.47402 * 90.00297 * 10 9 8 12 12 C 1.46893 * 111.00077 * 190.00346 * 11 10 9 13 13 C 1.50697 * 109.47587 * 162.40966 * 12 11 10 14 14 H 1.08010 * 119.99483 * 354.34589 * 13 12 11 15 15 C 1.37872 * 120.00487 * 174.35486 * 13 12 11 16 16 N 1.31514 * 119.99758 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00122 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47095 * 89.99587 * 17 15 13 19 19 H 1.48500 * 109.47027 * 209.99705 * 17 15 13 20 20 H 1.48502 * 109.47127 * 329.99430 * 17 15 13 21 21 C 1.46901 * 111.00231 * 66.04041 * 11 10 9 22 22 C 1.54893 * 110.47834 * 100.92552 * 21 11 10 23 23 C 1.55238 * 102.58489 * 156.67780 * 22 21 11 24 24 C 1.54266 * 104.23241 * 322.08285 * 23 22 21 25 25 C 1.53876 * 106.59886 * 23.61169 * 24 23 22 26 26 C 1.38183 * 120.08190 * 0.27643 * 9 8 6 27 27 H 1.08994 * 109.47124 * 299.99356 * 1 2 3 28 28 H 1.09000 * 109.47661 * 59.99520 * 1 2 3 29 29 H 1.09000 * 109.47262 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46635 * 240.00494 * 2 1 3 31 31 H 1.08995 * 109.47176 * 120.00998 * 2 1 3 32 32 H 1.08002 * 120.03680 * 0.02562 * 5 4 3 33 33 H 1.08000 * 119.95396 * 180.02562 * 8 6 5 34 34 H 1.08999 * 109.46562 * 329.99683 * 10 9 8 35 35 H 1.09007 * 109.46468 * 210.00141 * 10 9 8 36 36 H 1.09002 * 109.47272 * 282.40842 * 12 11 10 37 37 H 1.09004 * 109.47360 * 42.40234 * 12 11 10 38 38 H 0.97002 * 119.99781 * 180.02562 * 16 15 13 39 39 H 1.08998 * 110.43257 * 338.38791 * 21 11 10 40 40 H 1.08999 * 110.75481 * 275.06343 * 22 21 11 41 41 H 1.08994 * 110.76421 * 38.44001 * 22 21 11 42 42 H 1.08999 * 110.46875 * 203.39099 * 23 22 21 43 43 H 1.09008 * 110.58034 * 80.82799 * 23 22 21 44 44 H 1.08996 * 110.02854 * 264.32768 * 24 23 22 45 45 H 1.09001 * 110.07542 * 142.91733 * 24 23 22 46 46 H 1.08999 * 110.03340 * 240.71968 * 25 24 23 47 47 H 1.08992 * 110.03181 * 119.28561 * 25 24 23 48 48 H 1.07996 * 120.00514 * 179.70328 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5253 -0.0005 5 6 4.1994 0.4259 -0.0016 6 6 5.5704 0.6101 -0.0027 7 9 6.3957 -0.4596 -0.0042 8 6 6.0973 1.8912 -0.0033 9 6 5.2548 2.9867 -0.0022 10 6 5.8310 4.3792 -0.0034 11 7 6.0161 4.8315 -1.3887 12 6 6.7900 6.0791 -1.4363 13 6 7.3273 6.2842 -2.8292 14 1 7.1933 5.5174 -3.5780 15 6 7.9901 7.4504 -3.1477 16 7 8.1530 8.3842 -2.2360 17 14 8.6568 7.7043 -4.8742 18 1 7.6203 8.3565 -5.7141 19 1 9.8632 8.5683 -4.8168 20 1 9.0169 6.3899 -5.4640 21 6 4.7233 4.9875 -2.0688 22 6 4.3119 6.4801 -2.1147 23 6 3.3367 6.5251 -3.3217 24 6 3.9587 5.5560 -4.3482 25 6 4.8404 4.5784 -3.5515 26 6 3.8848 2.8069 0.0052 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5140 0.8898 32 1 3.7880 -0.5727 -0.0024 33 1 7.1678 2.0340 -0.0045 34 1 6.7931 4.3747 0.5090 35 1 5.1483 5.0553 0.5114 36 1 6.1460 6.9167 -1.1684 37 1 7.6197 6.0191 -0.7319 38 1 8.6190 9.2049 -2.4602 39 1 3.9566 4.3956 -1.5690 40 1 3.8048 6.7695 -1.1942 41 1 5.1795 7.1147 -2.2950 42 1 3.2844 7.5336 -3.7321 43 1 2.3449 6.1827 -3.0260 44 1 4.5671 6.1097 -5.0633 45 1 3.1733 5.0097 -4.8706 46 1 5.8767 4.6576 -3.8800 47 1 4.4824 3.5578 -3.6866 48 1 3.2276 3.6638 0.0108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237916897.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:38:41 Heat of formation + Delta-G solvation = -66.229131 kcal Electronic energy + Delta-G solvation = -28038.737109 eV Core-core repulsion = 24200.862217 eV Total energy + Delta-G solvation = -3837.874893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.185 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.95895 -41.30215 -40.14457 -38.47885 -35.99628 -34.64343 -32.85053 -32.29059 -30.50806 -29.52460 -29.09495 -28.52927 -26.03753 -24.35607 -23.81746 -23.51246 -21.97783 -21.09978 -20.12862 -19.15697 -18.37565 -17.78237 -17.27875 -17.18848 -17.02435 -16.82664 -16.69760 -16.49817 -16.12186 -15.48241 -15.32359 -14.83034 -14.64185 -14.29316 -14.14240 -14.07420 -13.85301 -13.42594 -13.26234 -13.09546 -12.96684 -12.82804 -12.73797 -12.49667 -12.37371 -12.32785 -12.06053 -12.02313 -11.87494 -11.73714 -11.66385 -11.56519 -11.21989 -10.92768 -10.72614 -10.46915 -9.83924 -9.26115 -8.82301 -8.09391 -6.14692 0.07465 0.26754 1.41821 1.43403 1.53063 2.13226 2.42976 2.52091 3.15405 3.23584 3.41932 3.63148 3.90533 3.93236 3.96547 4.00150 4.07396 4.14450 4.19491 4.26189 4.36148 4.40364 4.46450 4.55798 4.72301 4.76620 4.82274 4.85667 4.91220 4.96788 4.97748 4.98994 5.02442 5.07441 5.13178 5.21181 5.24224 5.27913 5.33170 5.36226 5.50422 5.57251 5.59453 5.67495 5.77097 5.93650 6.23381 6.35140 6.48938 6.74146 7.02231 7.52712 9.00265 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.015034 B = 0.003705 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.016836 B = 7554.711053 C = 8519.854522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.041 3.959 3 O -0.321 6.321 4 C 0.160 3.840 5 C -0.245 4.245 6 C 0.129 3.871 7 F -0.142 7.142 8 C -0.179 4.179 9 C 0.000 4.000 10 C 0.089 3.911 11 N -0.531 5.531 12 C 0.197 3.803 13 C -0.495 4.495 14 H 0.068 0.932 15 C 0.007 3.993 16 N -0.934 5.934 17 Si 0.947 3.053 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.269 1.269 21 C 0.089 3.911 22 C -0.164 4.164 23 C -0.111 4.111 24 C -0.115 4.115 25 C -0.113 4.113 26 C -0.162 4.162 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.161 0.839 33 H 0.134 0.866 34 H 0.078 0.922 35 H 0.043 0.957 36 H 0.002 0.998 37 H -0.007 1.007 38 H 0.259 0.741 39 H 0.084 0.916 40 H 0.050 0.950 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.077 0.923 44 H 0.045 0.955 45 H 0.076 0.924 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.084 -16.033 4.324 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.034 4.034 3 O -0.235 6.235 4 C 0.114 3.886 5 C -0.264 4.264 6 C 0.110 3.890 7 F -0.120 7.120 8 C -0.199 4.199 9 C 0.000 4.000 10 C -0.039 4.039 11 N -0.254 5.254 12 C 0.072 3.928 13 C -0.534 4.534 14 H 0.085 0.915 15 C -0.190 4.190 16 N -0.575 5.575 17 Si 0.774 3.226 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.193 1.193 21 C -0.019 4.019 22 C -0.203 4.203 23 C -0.149 4.149 24 C -0.153 4.153 25 C -0.151 4.151 26 C -0.181 4.181 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.178 0.822 33 H 0.152 0.848 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.019 0.981 37 H 0.011 0.989 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.074 0.926 43 H 0.095 0.905 44 H 0.064 0.936 45 H 0.095 0.905 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.857 -16.141 4.103 22.318 hybrid contribution 0.773 0.874 -0.289 1.202 sum -14.084 -15.267 3.813 21.118 Atomic orbital electron populations 1.21808 0.91248 1.04256 1.03295 1.23159 0.97117 0.80518 1.02562 1.86110 1.17683 1.31605 1.88138 1.18530 0.82836 0.92867 0.94346 1.21221 0.91750 1.00557 1.12882 1.17386 0.87677 0.83009 1.00961 1.91483 1.72110 1.54587 1.93836 1.20970 1.01417 0.90533 1.06960 1.19322 0.92038 0.94627 0.94057 1.21069 1.00264 0.91248 0.91296 1.62198 1.17259 1.33197 1.12782 1.19710 0.91243 0.85698 0.96177 1.21508 1.33461 1.01402 0.96997 0.91451 1.25658 0.96980 0.96053 1.00315 1.70065 1.44262 1.08135 1.35081 0.85704 0.77839 0.78066 0.81008 1.20160 1.21402 1.19309 1.22533 0.89752 0.94516 0.95115 1.23331 1.00055 0.99127 0.97763 1.22242 0.98240 0.98972 0.95429 1.22021 0.98522 0.97092 0.97686 1.22219 1.00561 0.97687 0.94584 1.20439 0.94377 0.95622 1.07651 0.91698 0.91895 0.88054 0.91021 0.90691 0.82179 0.84826 0.90381 0.93836 0.98070 0.98856 0.93171 0.89805 0.93086 0.90248 0.92643 0.90482 0.93585 0.90504 0.91999 0.92526 0.84446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.28 71.98 0.74 -0.80 16 2 C 0.04 0.57 5.46 71.98 0.39 0.96 16 3 O -0.32 -7.01 10.14 -92.35 -0.94 -7.95 16 4 C 0.16 3.93 6.69 22.50 0.15 4.08 16 5 C -0.24 -5.64 9.02 22.41 0.20 -5.44 16 6 C 0.13 3.47 7.30 22.36 0.16 3.63 16 7 F -0.14 -3.83 17.27 44.97 0.78 -3.05 16 8 C -0.18 -5.31 9.68 22.33 0.22 -5.09 16 9 C 0.00 0.01 5.02 -19.89 -0.10 -0.09 16 10 C 0.09 3.09 5.07 85.56 0.43 3.52 16 11 N -0.53 -21.91 4.34 -873.78 -3.80 -25.70 16 12 C 0.20 9.91 4.27 85.56 0.37 10.28 16 13 C -0.50 -26.69 7.41 25.60 0.19 -26.50 16 14 H 0.07 3.63 5.20 -2.91 -0.02 3.62 16 15 C 0.01 0.40 5.46 84.65 0.46 0.87 16 16 N -0.93 -54.79 13.29 21.45 0.28 -54.51 16 17 Si 0.95 44.13 29.54 68.60 2.03 46.16 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 21 C 0.09 3.30 2.69 45.99 0.12 3.42 16 22 C -0.16 -6.33 5.28 32.01 0.17 -6.16 16 23 C -0.11 -3.57 6.84 31.79 0.22 -3.35 16 24 C -0.12 -3.77 6.80 31.32 0.21 -3.56 16 25 C -0.11 -4.13 6.17 31.32 0.19 -3.93 16 26 C -0.16 -4.42 8.02 22.37 0.18 -4.24 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.89 7.66 -2.38 -0.02 0.87 16 31 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 32 H 0.16 2.78 6.30 -2.91 -0.02 2.76 16 33 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 34 H 0.08 2.74 7.79 -2.39 -0.02 2.72 16 35 H 0.04 1.45 8.06 -2.38 -0.02 1.43 16 36 H 0.00 0.09 5.38 -2.39 -0.01 0.08 16 37 H -0.01 -0.36 7.78 -2.38 -0.02 -0.38 16 38 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 39 H 0.08 2.78 4.65 -2.39 -0.01 2.77 16 40 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.08 3.82 4.53 -2.39 -0.01 3.81 16 42 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 44 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.06 2.67 5.08 -2.39 -0.01 2.66 16 47 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.14 3.62 7.18 -2.91 -0.02 3.60 16 Total: -1.00 -61.37 374.25 3.63 -57.74 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.96 Total: 19.71 kcal Atomic # 6 Polarization: -36.72 SS G_CDS: 4.31 Total: -32.40 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -3.51 Total: -80.21 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.94 Total: -7.95 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.78 Total: -3.05 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -61.37 3.63 -57.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237916897.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.488 kcal (2) G-P(sol) polarization free energy of solvation -61.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds